Wall clock time and date at job start Tue Mar 31 2020 06:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00154 * 2 1 4 4 C 1.53000 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.73443 * 46.23828 * 4 3 2 6 6 C 1.53492 * 113.46948 * 177.06017 * 4 3 2 7 7 C 1.53234 * 83.43128 * 140.67788 * 6 4 3 8 8 N 1.47063 * 113.46921 * 275.49933 * 4 3 2 9 9 C 1.34780 * 136.05734 * 38.05732 * 8 4 3 10 10 O 1.21578 * 120.00106 * 0.02562 * 9 8 4 11 11 N 1.34773 * 120.00048 * 180.27831 * 9 8 4 12 12 C 1.39248 * 119.99956 * 174.58314 * 11 9 8 13 13 C 1.39687 * 119.57244 * 185.41773 * 12 11 9 14 14 C 1.38652 * 119.49229 * 179.77071 * 13 12 11 15 15 C 1.38352 * 118.67185 * 0.49511 * 14 13 12 16 16 C 1.40574 * 119.12803 * 359.74723 * 15 14 13 17 17 C 1.41338 * 119.78423 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99940 * 0.02646 * 17 16 15 19 19 C 1.40023 * 119.99667 * 180.02562 * 17 16 15 20 20 N 1.30740 * 120.00553 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99913 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47022 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47268 * 119.99849 * 21 19 17 24 24 H 1.48499 * 109.46955 * 239.99991 * 21 19 17 25 25 N 1.31900 * 119.57792 * 5.68861 * 12 11 9 26 26 H 1.09004 * 109.46850 * 299.99802 * 1 2 3 27 27 H 1.08999 * 109.47758 * 59.99435 * 1 2 3 28 28 H 1.08997 * 109.47439 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47024 * 60.00369 * 3 2 1 30 30 H 1.08999 * 109.47070 * 300.00745 * 3 2 1 31 31 H 1.08997 * 114.20752 * 254.43325 * 6 4 3 32 32 H 1.09003 * 114.20642 * 27.06723 * 6 4 3 33 33 H 1.08999 * 113.38580 * 219.29607 * 7 6 4 34 34 H 1.09000 * 113.47139 * 88.92651 * 7 6 4 35 35 H 0.97001 * 119.99997 * 354.58492 * 11 9 8 36 36 H 1.07995 * 120.25630 * 359.97438 * 13 12 11 37 37 H 1.08001 * 120.66278 * 180.22391 * 14 13 12 38 38 H 1.07998 * 120.43387 * 179.73195 * 15 14 13 39 39 H 0.97003 * 120.00556 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9002 0.4583 -0.7270 6 6 4.2558 2.5381 -0.0729 7 6 5.2177 1.8804 0.9223 8 7 4.1096 1.0093 1.3419 9 6 3.7677 0.3467 2.4646 10 8 2.7442 -0.3086 2.4959 11 7 4.5578 0.4148 3.5543 12 6 4.1502 -0.1754 4.7479 13 6 4.9204 -0.0032 5.9004 14 6 4.5104 -0.5876 7.0890 15 6 3.3476 -1.3373 7.0937 16 6 2.6192 -1.4776 5.8996 17 6 1.4296 -2.2408 5.8885 18 1 1.0829 -2.7135 6.7954 19 6 0.7008 -2.3840 4.7015 20 7 1.1203 -1.8113 3.6036 21 14 -0.8718 -3.3921 4.6868 22 1 -1.1272 -3.9307 6.0469 23 1 -2.0084 -2.5304 4.2737 24 1 -0.7296 -4.5172 3.7281 25 7 3.0446 -0.8942 4.7744 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 4.6969 2.7583 -1.0450 32 1 3.6859 3.3704 0.3402 33 1 5.5587 2.5569 1.7059 34 1 6.0359 1.3420 0.4440 35 1 5.4105 0.8749 3.5072 36 1 5.8265 0.5834 5.8667 37 1 5.0895 -0.4637 7.9922 38 1 3.0043 -1.8087 8.0027 39 1 0.6156 -1.9107 2.7812 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881145934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:16 Heat of formation + Delta-G solvation = 15.093790 kcal Electronic energy + Delta-G solvation = -23984.586017 eV Core-core repulsion = 20508.544229 eV Total energy + Delta-G solvation = -3476.041788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.47163 -40.22788 -38.65561 -38.06243 -35.79344 -34.75144 -32.22763 -31.56302 -30.21820 -29.55106 -27.37483 -26.99041 -24.26380 -23.82910 -23.18308 -22.24079 -20.28749 -19.53427 -18.48811 -17.93819 -17.35088 -17.01742 -16.63111 -16.40653 -16.24541 -15.75557 -15.59335 -15.52132 -14.76359 -14.61584 -14.29781 -13.98174 -13.72352 -13.27788 -13.20333 -12.93163 -12.89947 -12.71014 -12.52227 -12.30891 -12.26786 -12.07499 -11.73328 -11.56372 -11.48561 -10.84494 -10.61760 -10.49798 -9.87161 -9.39602 -9.04829 -8.73574 -7.98409 -6.38998 0.98456 1.29858 1.37123 1.50359 1.52037 1.64883 2.26624 2.63263 2.91207 3.08022 3.15533 3.56318 4.05277 4.09580 4.15839 4.28714 4.30800 4.41444 4.44079 4.48486 4.58930 4.67145 4.69883 4.76911 4.81571 4.85726 4.97664 5.00754 5.08032 5.18861 5.30878 5.40602 5.70445 5.90298 5.94444 6.16032 6.36437 6.39785 6.50222 6.86559 7.09853 7.34091 8.11514 8.42416 8.61581 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.007328 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.229868 B = 3820.048742 C = 5866.912756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.400 6.400 3 C 0.061 3.939 4 C 0.147 3.853 5 H 0.095 0.905 6 C -0.115 4.115 7 C 0.094 3.906 8 N -0.679 5.679 9 C 0.674 3.326 10 O -0.491 6.491 11 N -0.662 5.662 12 C 0.366 3.634 13 C -0.349 4.349 14 C -0.032 4.032 15 C -0.332 4.332 16 C 0.237 3.763 17 C -0.466 4.466 18 H 0.085 0.915 19 C 0.008 3.992 20 N -0.674 5.674 21 Si 0.969 3.031 22 H -0.253 1.253 23 H -0.271 1.271 24 H -0.272 1.272 25 N -0.507 5.507 26 H 0.018 0.982 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.022 0.978 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.411 0.589 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.104 0.896 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.738 10.407 -11.316 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.319 6.319 3 C -0.016 4.016 4 C 0.043 3.957 5 H 0.113 0.887 6 C -0.153 4.153 7 C -0.028 4.028 8 N -0.424 5.424 9 C 0.375 3.625 10 O -0.356 6.356 11 N -0.312 5.312 12 C 0.126 3.874 13 C -0.375 4.375 14 C -0.056 4.056 15 C -0.355 4.355 16 C 0.112 3.888 17 C -0.497 4.497 18 H 0.103 0.897 19 C -0.219 4.219 20 N -0.293 5.293 21 Si 0.790 3.210 22 H -0.176 1.176 23 H -0.196 1.196 24 H -0.197 1.197 25 N -0.227 5.227 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.040 0.960 30 H 0.105 0.895 31 H 0.149 0.851 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.248 0.752 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.122 0.878 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.430 9.552 -12.124 16.058 hybrid contribution -0.055 -0.190 1.061 1.080 sum 4.375 9.362 -11.062 15.138 Atomic orbital electron populations 1.22621 0.80894 1.02425 0.99472 1.87975 1.20223 1.28490 1.95231 1.22821 0.93961 0.84929 0.99885 1.22829 0.92017 0.98220 0.82668 0.88724 1.23347 0.96367 0.93779 1.01808 1.23079 0.91365 0.91156 0.97236 1.49255 1.28975 1.53371 1.10794 1.16221 0.84888 0.81149 0.80207 1.91411 1.23908 1.39922 1.80388 1.42416 1.22608 1.58016 1.08203 1.18871 0.92051 0.91562 0.84905 1.20889 1.06121 1.17451 0.93021 1.21003 0.94297 0.93224 0.97095 1.21791 1.01942 1.12940 0.98874 1.18892 0.92914 0.90062 0.86970 1.19896 1.05538 1.27487 0.96733 0.89736 1.27043 1.02193 0.97390 0.95252 1.70561 1.33096 1.26643 0.98963 0.85368 0.77770 0.78335 0.79557 1.17614 1.19572 1.19741 1.68668 1.13393 1.12990 1.27600 0.96353 0.91658 0.90518 0.95966 0.89544 0.85124 0.88540 0.89698 0.88402 0.75248 0.85295 0.84454 0.87801 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 11.01 113.37 1.25 2.62 16 2 O -0.40 -15.27 9.83 -140.93 -1.39 -16.65 16 3 C 0.06 1.81 5.38 71.98 0.39 2.20 16 4 C 0.15 3.74 4.33 41.79 0.18 3.93 16 5 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 6 C -0.12 -1.64 8.02 30.84 0.25 -1.39 16 7 C 0.09 1.71 8.28 83.09 0.69 2.39 16 8 N -0.68 -21.91 3.57 -852.40 -3.04 -24.96 16 9 C 0.67 30.70 8.65 179.05 1.55 32.25 16 10 O -0.49 -27.70 11.53 4.09 0.05 -27.66 16 11 N -0.66 -28.41 5.39 -322.12 -1.74 -30.15 16 12 C 0.37 18.97 7.43 133.26 0.99 19.96 16 13 C -0.35 -15.77 9.96 22.72 0.23 -15.55 16 14 C -0.03 -1.46 10.15 22.40 0.23 -1.23 16 15 C -0.33 -17.55 9.83 22.87 0.22 -17.32 16 16 C 0.24 14.35 6.55 40.19 0.26 14.61 16 17 C -0.47 -27.72 9.14 23.47 0.21 -27.51 16 18 H 0.08 4.72 7.85 -2.91 -0.02 4.70 16 19 C 0.01 0.43 5.50 85.29 0.47 0.90 16 20 N -0.67 -40.93 8.99 21.84 0.20 -40.73 16 21 Si 0.97 42.65 29.56 68.60 2.03 44.68 16 22 H -0.25 -10.56 7.11 99.48 0.71 -9.86 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 N -0.51 -30.84 5.74 -186.36 -1.07 -31.91 16 26 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 1.37 8.12 -2.39 -0.02 1.35 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.41 13.53 8.42 -92.71 -0.78 12.75 16 36 H 0.13 4.71 8.06 -2.91 -0.02 4.68 16 37 H 0.14 4.99 8.06 -2.91 -0.02 4.97 16 38 H 0.10 5.10 8.06 -2.91 -0.02 5.08 16 39 H 0.27 15.55 8.29 -92.71 -0.77 14.78 16 Total: -1.00 -84.06 330.27 2.24 -81.83 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.28 Total: 29.69 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 6.92 Total: 15.86 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -5.65 Total: -127.75 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -1.34 Total: -44.31 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -84.06 2.24 -81.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.920 kcal (2) G-P(sol) polarization free energy of solvation -84.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds