Wall clock time and date at job start Tue Mar 31 2020 06:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 114.00124 * 2 1 4 4 C 1.52995 * 109.47392 * 180.02562 * 3 2 1 5 5 N 1.46502 * 115.54875 * 58.26522 * 4 3 2 6 6 C 1.34783 * 119.99845 * 65.35764 * 5 4 3 7 7 O 1.21575 * 119.99953 * 5.10275 * 6 5 4 8 8 N 1.34778 * 119.99984 * 185.10661 * 6 5 4 9 9 C 1.39236 * 119.99878 * 173.64790 * 8 6 5 10 10 C 1.39684 * 119.57785 * 341.85552 * 9 8 6 11 11 C 1.38655 * 119.49425 * 179.72765 * 10 9 8 12 12 C 1.38353 * 118.67125 * 0.53352 * 11 10 9 13 13 C 1.40574 * 119.12879 * 359.72905 * 12 11 10 14 14 C 1.41330 * 119.78431 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00009 * 5.86631 * 14 13 12 16 16 C 1.40027 * 120.00056 * 185.86225 * 14 13 12 17 17 N 1.30737 * 120.00161 * 5.87373 * 16 14 13 18 18 Si 1.86798 * 119.99807 * 185.87831 * 16 14 13 19 19 H 1.48500 * 109.47260 * 94.99624 * 18 16 14 20 20 H 1.48506 * 109.46764 * 214.99259 * 18 16 14 21 21 H 1.48493 * 109.47735 * 334.99239 * 18 16 14 22 22 N 1.31914 * 119.57383 * 162.12214 * 9 8 6 23 23 C 1.53000 * 117.50231 * 272.59845 * 4 3 2 24 24 C 1.53000 * 117.50252 * 203.93434 * 4 3 2 25 25 H 1.09000 * 109.47841 * 59.99706 * 1 2 3 26 26 H 1.09003 * 109.47165 * 299.99286 * 1 2 3 27 27 H 1.09001 * 109.47414 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47267 * 300.00637 * 3 2 1 29 29 H 1.09002 * 109.46925 * 60.00370 * 3 2 1 30 30 H 0.96995 * 120.00447 * 245.35834 * 5 4 3 31 31 H 0.97003 * 119.99327 * 353.64703 * 8 6 5 32 32 H 1.08001 * 120.25024 * 359.97438 * 10 9 8 33 33 H 1.08002 * 120.65916 * 180.23840 * 11 10 9 34 34 H 1.07998 * 120.43213 * 179.75338 * 12 11 10 35 35 H 0.96997 * 120.00493 * 180.02562 * 17 16 14 36 36 H 1.09001 * 117.49475 * 359.97438 * 23 4 3 37 37 H 1.08991 * 117.50151 * 145.01987 * 23 4 3 38 38 H 1.08996 * 117.50104 * 214.98382 * 24 4 3 39 39 H 1.08999 * 117.49505 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1099 0.4420 -1.1252 6 6 3.9986 0.9246 -2.3787 7 8 3.5043 2.0192 -2.5670 8 7 4.4353 0.1936 -3.4235 9 6 4.2020 0.6305 -4.7247 10 6 3.2152 1.5900 -4.9634 11 6 2.9882 2.0280 -6.2592 12 6 3.7446 1.4885 -7.2844 13 6 4.7190 0.5220 -6.9803 14 6 5.4999 -0.0379 -8.0167 15 1 5.4145 0.3435 -9.0235 16 6 6.3845 -1.0870 -7.7382 17 7 6.4056 -1.6256 -6.5471 18 14 7.5345 -1.7171 -9.0685 19 1 8.8523 -1.0440 -8.9432 20 1 7.7113 -3.1837 -8.9161 21 1 6.9543 -1.4246 -10.4038 22 7 4.9121 0.1292 -5.7170 23 6 4.2354 1.0673 1.3547 24 6 4.3378 2.3653 0.5498 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6885 1.8464 -0.8899 29 1 1.6886 1.8463 0.8900 30 1 4.5703 -0.3971 -0.9677 31 1 4.9121 -0.6368 -3.2687 32 1 2.6363 1.9904 -4.1443 33 1 2.2327 2.7719 -6.4647 34 1 3.5888 1.8062 -8.3048 35 1 7.0186 -2.3521 -6.3540 36 1 3.6093 1.0766 2.2470 37 1 5.1235 0.4379 1.4097 38 1 5.2933 2.5893 0.0755 39 1 3.7791 3.2283 0.9120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881150145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:49 Heat of formation + Delta-G solvation = 5.663425 kcal Electronic energy + Delta-G solvation = -22978.248373 eV Core-core repulsion = 19501.797653 eV Total energy + Delta-G solvation = -3476.450720 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.21217 -38.65003 -37.55994 -36.64684 -34.13923 -33.35146 -32.39413 -30.34384 -28.94456 -28.18115 -25.61856 -25.41282 -22.90287 -22.48547 -21.53358 -20.45462 -19.71413 -18.10615 -17.30096 -16.89170 -16.27220 -15.97807 -15.76757 -15.01562 -14.85249 -14.63661 -14.32045 -14.14251 -13.95341 -13.40636 -12.89391 -12.51090 -12.36091 -12.24105 -11.95888 -11.69540 -11.55354 -11.26070 -11.07079 -10.97097 -10.87333 -10.62443 -10.29238 -10.07302 -9.83366 -9.65048 -9.24444 -9.00754 -8.81290 -7.99174 -7.62963 -7.01361 -6.40352 -4.45547 2.69452 2.88875 2.99989 3.10901 3.14416 3.28368 3.35914 3.72213 3.90050 3.97708 4.49475 4.59742 4.78304 4.83184 4.94488 5.16051 5.28893 5.32120 5.46055 5.48874 5.59243 5.73082 5.79521 5.95865 5.96827 6.18910 6.48336 6.63771 6.77444 6.86189 6.99295 7.10051 7.14640 7.28457 7.56382 7.67147 7.95143 8.12275 8.21802 8.49703 8.74592 8.94902 9.10684 10.09538 10.34763 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022635 B = 0.003760 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.723719 B = 7445.880125 C = 7858.538261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.089 3.911 4 C 0.129 3.871 5 N -0.711 5.711 6 C 0.712 3.288 7 O -0.566 6.566 8 N -0.659 5.659 9 C 0.376 3.624 10 C -0.312 4.312 11 C -0.049 4.049 12 C -0.292 4.292 13 C 0.283 3.717 14 C -0.439 4.439 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.726 5.726 18 Si 0.907 3.093 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.262 1.262 22 N -0.511 5.511 23 C -0.167 4.167 24 C -0.162 4.162 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.398 0.602 31 H 0.403 0.597 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.270 0.730 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.711 1.076 14.735 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C 0.011 3.989 4 C 0.040 3.960 5 N -0.367 5.367 6 C 0.412 3.588 7 O -0.442 6.442 8 N -0.306 5.306 9 C 0.141 3.859 10 C -0.337 4.337 11 C -0.074 4.074 12 C -0.315 4.315 13 C 0.156 3.844 14 C -0.471 4.471 15 H 0.103 0.897 16 C -0.151 4.151 17 N -0.348 5.348 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.186 1.186 22 N -0.230 5.230 23 C -0.205 4.205 24 C -0.201 4.201 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.233 0.767 31 H 0.238 0.762 32 H 0.151 0.849 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.351 1.085 14.855 15.517 hybrid contribution 0.217 -0.329 -0.623 0.737 sum -4.134 0.756 14.232 14.839 Atomic orbital electron populations 1.22721 0.81187 1.02641 0.99870 1.87882 1.19403 1.27540 1.95415 1.22253 0.90314 0.85092 1.01233 1.20072 0.90023 0.99574 0.86338 1.44297 1.61958 1.26408 1.03995 1.15711 0.79296 0.83847 0.79935 1.90805 1.50021 1.19955 1.83451 1.42250 1.58824 1.25768 1.03720 1.18185 0.91506 0.92386 0.83808 1.21630 1.06317 1.08051 0.97710 1.20803 0.96924 0.96848 0.92811 1.21691 1.04807 1.07154 0.97890 1.18145 0.89444 0.88265 0.88523 1.19548 1.18360 1.14069 0.95091 0.89704 1.26007 0.97109 0.95955 0.95979 1.70074 1.28401 1.16319 1.19993 0.86338 0.80600 0.78245 0.81731 1.19560 1.20249 1.18550 1.67958 1.26397 1.29834 0.98817 1.23348 1.02663 1.00778 0.93704 1.23345 1.02288 0.92295 1.02153 0.93946 0.94363 0.89716 0.91205 0.92549 0.76693 0.76185 0.84934 0.88452 0.88314 0.91846 0.87705 0.88083 0.87851 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.17 10.68 -35.23 -0.38 -5.54 16 3 C 0.09 1.14 5.74 37.15 0.21 1.35 16 4 C 0.13 1.63 1.91 -131.82 -0.25 1.38 16 5 N -0.71 -10.38 5.44 -52.42 -0.29 -10.66 16 6 C 0.71 13.73 8.25 -86.91 -0.72 13.02 16 7 O -0.57 -12.48 12.23 5.30 0.06 -12.42 16 8 N -0.66 -13.88 5.42 -15.78 -0.09 -13.97 16 9 C 0.38 9.62 7.51 -155.00 -1.16 8.46 16 10 C -0.31 -7.87 8.83 -38.89 -0.34 -8.21 16 11 C -0.05 -1.19 10.15 -39.39 -0.40 -1.59 16 12 C -0.29 -7.52 9.83 -38.66 -0.38 -7.90 16 13 C 0.28 7.94 6.53 -85.00 -0.56 7.39 16 14 C -0.44 -11.90 9.13 -37.74 -0.34 -12.24 16 15 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 16 C 0.07 1.89 5.48 -17.35 -0.10 1.79 16 17 N -0.73 -19.11 11.53 55.55 0.64 -18.47 16 18 Si 0.91 18.70 29.56 -169.99 -5.03 13.68 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 22 N -0.51 -14.24 7.96 -10.26 -0.08 -14.33 16 23 C -0.17 -1.54 10.16 -26.69 -0.27 -1.81 16 24 C -0.16 -1.78 10.18 -26.69 -0.27 -2.05 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.06 7.28 -51.93 -0.38 0.69 16 29 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 30 H 0.40 4.85 8.85 -40.82 -0.36 4.49 16 31 H 0.40 7.67 8.84 -40.82 -0.36 7.31 16 32 H 0.13 3.31 5.31 -52.52 -0.28 3.03 16 33 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 34 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 35 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -32.69 336.51 -8.70 -41.39 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -5.15 Total: 14.24 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -3.47 Total: 1.02 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.19 Total: -57.42 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.31 Total: -17.96 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.69 -8.70 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881150145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.049 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds