Wall clock time and date at job start Tue Mar 31 2020 06:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 114.00124 * 2 1 4 4 C 1.52995 * 109.47392 * 180.02562 * 3 2 1 5 5 N 1.46502 * 115.54875 * 58.26522 * 4 3 2 6 6 C 1.34783 * 119.99845 * 65.35764 * 5 4 3 7 7 O 1.21575 * 119.99953 * 5.10275 * 6 5 4 8 8 N 1.34778 * 119.99984 * 185.10661 * 6 5 4 9 9 C 1.39236 * 119.99878 * 173.64790 * 8 6 5 10 10 C 1.39684 * 119.57785 * 341.85552 * 9 8 6 11 11 C 1.38655 * 119.49425 * 179.72765 * 10 9 8 12 12 C 1.38353 * 118.67125 * 0.53352 * 11 10 9 13 13 C 1.40574 * 119.12879 * 359.72905 * 12 11 10 14 14 C 1.41330 * 119.78431 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00009 * 5.86631 * 14 13 12 16 16 C 1.40027 * 120.00056 * 185.86225 * 14 13 12 17 17 N 1.30737 * 120.00161 * 5.87373 * 16 14 13 18 18 Si 1.86798 * 119.99807 * 185.87831 * 16 14 13 19 19 H 1.48500 * 109.47260 * 94.99624 * 18 16 14 20 20 H 1.48506 * 109.46764 * 214.99259 * 18 16 14 21 21 H 1.48493 * 109.47735 * 334.99239 * 18 16 14 22 22 N 1.31914 * 119.57383 * 162.12214 * 9 8 6 23 23 C 1.53000 * 117.50231 * 272.59845 * 4 3 2 24 24 C 1.53000 * 117.50252 * 203.93434 * 4 3 2 25 25 H 1.09000 * 109.47841 * 59.99706 * 1 2 3 26 26 H 1.09003 * 109.47165 * 299.99286 * 1 2 3 27 27 H 1.09001 * 109.47414 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47267 * 300.00637 * 3 2 1 29 29 H 1.09002 * 109.46925 * 60.00370 * 3 2 1 30 30 H 0.96995 * 120.00447 * 245.35834 * 5 4 3 31 31 H 0.97003 * 119.99327 * 353.64703 * 8 6 5 32 32 H 1.08001 * 120.25024 * 359.97438 * 10 9 8 33 33 H 1.08002 * 120.65916 * 180.23840 * 11 10 9 34 34 H 1.07998 * 120.43213 * 179.75338 * 12 11 10 35 35 H 0.96997 * 120.00493 * 180.02562 * 17 16 14 36 36 H 1.09001 * 117.49475 * 359.97438 * 23 4 3 37 37 H 1.08991 * 117.50151 * 145.01987 * 23 4 3 38 38 H 1.08996 * 117.50104 * 214.98382 * 24 4 3 39 39 H 1.08999 * 117.49505 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1099 0.4420 -1.1252 6 6 3.9986 0.9246 -2.3787 7 8 3.5043 2.0192 -2.5670 8 7 4.4353 0.1936 -3.4235 9 6 4.2020 0.6305 -4.7247 10 6 3.2152 1.5900 -4.9634 11 6 2.9882 2.0280 -6.2592 12 6 3.7446 1.4885 -7.2844 13 6 4.7190 0.5220 -6.9803 14 6 5.4999 -0.0379 -8.0167 15 1 5.4145 0.3435 -9.0235 16 6 6.3845 -1.0870 -7.7382 17 7 6.4056 -1.6256 -6.5471 18 14 7.5345 -1.7171 -9.0685 19 1 8.8523 -1.0440 -8.9432 20 1 7.7113 -3.1837 -8.9161 21 1 6.9543 -1.4246 -10.4038 22 7 4.9121 0.1292 -5.7170 23 6 4.2354 1.0673 1.3547 24 6 4.3378 2.3653 0.5498 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6885 1.8464 -0.8899 29 1 1.6886 1.8463 0.8900 30 1 4.5703 -0.3971 -0.9677 31 1 4.9121 -0.6368 -3.2687 32 1 2.6363 1.9904 -4.1443 33 1 2.2327 2.7719 -6.4647 34 1 3.5888 1.8062 -8.3048 35 1 7.0186 -2.3521 -6.3540 36 1 3.6093 1.0766 2.2470 37 1 5.1235 0.4379 1.4097 38 1 5.2933 2.5893 0.0755 39 1 3.7791 3.2283 0.9120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881150145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:49 Heat of formation + Delta-G solvation = -16.908994 kcal Electronic energy + Delta-G solvation = -22979.227187 eV Core-core repulsion = 19501.797653 eV Total energy + Delta-G solvation = -3477.429533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69724 -40.08837 -39.04261 -37.68154 -35.92641 -35.16202 -33.77143 -32.31601 -30.80651 -29.09906 -27.39857 -26.48839 -24.40212 -23.51283 -23.39653 -22.06060 -20.97234 -19.76327 -19.02265 -18.31354 -17.58720 -17.06004 -16.95573 -16.54687 -16.40670 -16.08761 -15.90347 -15.67276 -15.18920 -14.90052 -14.64560 -14.18166 -13.82924 -13.39517 -13.27607 -12.97469 -12.84790 -12.65108 -12.58827 -12.49489 -12.38597 -11.92672 -11.82922 -11.59855 -11.22101 -11.05900 -10.80467 -10.53537 -10.09783 -9.95887 -9.62434 -8.93133 -8.32306 -6.49116 0.82715 1.12580 1.43080 1.48807 1.55571 1.57577 2.12880 2.25044 2.49397 2.89104 3.00114 3.09674 3.75659 3.90049 3.94358 4.02095 4.29388 4.34171 4.42869 4.50716 4.57187 4.63978 4.74153 4.75814 4.81864 4.88507 4.93028 4.98711 5.01247 5.19343 5.24724 5.56150 5.58598 5.70254 5.86909 5.98122 6.18746 6.22138 6.29748 6.75346 6.90805 7.04225 7.52781 8.11076 8.45746 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022635 B = 0.003760 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.723719 B = 7445.880125 C = 7858.538261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.092 3.908 4 C 0.090 3.910 5 N -0.693 5.693 6 C 0.710 3.290 7 O -0.595 6.595 8 N -0.658 5.658 9 C 0.367 3.633 10 C -0.327 4.327 11 C -0.047 4.047 12 C -0.311 4.311 13 C 0.248 3.752 14 C -0.469 4.469 15 H 0.092 0.908 16 C 0.028 3.972 17 N -0.756 5.756 18 Si 0.989 3.011 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.255 1.255 22 N -0.537 5.537 23 C -0.130 4.130 24 C -0.167 4.167 25 H 0.030 0.970 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.035 0.965 29 H 0.088 0.912 30 H 0.410 0.590 31 H 0.411 0.589 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.280 0.720 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 0.569 15.989 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C 0.014 3.986 4 C 0.002 3.998 5 N -0.348 5.348 6 C 0.410 3.590 7 O -0.474 6.474 8 N -0.306 5.306 9 C 0.131 3.869 10 C -0.351 4.351 11 C -0.072 4.072 12 C -0.333 4.333 13 C 0.122 3.878 14 C -0.500 4.500 15 H 0.110 0.890 16 C -0.193 4.193 17 N -0.378 5.378 18 Si 0.809 3.191 19 H -0.191 1.191 20 H -0.191 1.191 21 H -0.179 1.179 22 N -0.257 5.257 23 C -0.168 4.168 24 C -0.205 4.205 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.247 0.753 31 H 0.247 0.753 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.948 0.564 16.178 16.662 hybrid contribution 0.025 -0.150 -0.889 0.902 sum -3.923 0.415 15.288 15.789 Atomic orbital electron populations 1.22890 0.79857 1.03679 1.00509 1.87844 1.20991 1.27985 1.95524 1.22228 0.90432 0.84892 1.01041 1.20493 0.90353 1.01622 0.87329 1.44184 1.60992 1.26735 1.02845 1.15874 0.78866 0.83400 0.80811 1.90764 1.51257 1.21259 1.84120 1.42196 1.59236 1.26252 1.02878 1.18518 0.91192 0.92203 0.84991 1.21823 1.06620 1.08445 0.98252 1.21162 0.96999 0.96856 0.92157 1.21875 1.05029 1.07406 0.99024 1.18673 0.90550 0.89357 0.89224 1.19940 1.19496 1.15235 0.95371 0.89018 1.26942 0.98295 0.95538 0.98556 1.70148 1.29057 1.16664 1.21975 0.85102 0.77784 0.77842 0.78375 1.19133 1.19118 1.17858 1.67988 1.27486 1.30917 0.99282 1.23493 1.02354 0.98672 0.92240 1.23402 1.01372 0.93306 1.02430 0.95081 0.91925 0.88557 0.94667 0.89417 0.75274 0.75331 0.84857 0.85224 0.86846 0.90956 0.85136 0.86822 0.89289 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.40 -10.43 10.68 -148.98 -1.59 -12.02 16 3 C 0.09 2.25 5.74 71.98 0.41 2.66 16 4 C 0.09 2.15 1.91 3.60 0.01 2.15 16 5 N -0.69 -19.87 5.44 -438.02 -2.38 -22.25 16 6 C 0.71 27.83 8.25 179.05 1.48 29.31 16 7 O -0.60 -26.89 12.23 -3.95 -0.05 -26.93 16 8 N -0.66 -28.42 5.42 -322.12 -1.75 -30.16 16 9 C 0.37 19.31 7.51 133.26 1.00 20.31 16 10 C -0.33 -16.82 8.83 22.72 0.20 -16.62 16 11 C -0.05 -2.32 10.15 22.40 0.23 -2.09 16 12 C -0.31 -16.25 9.83 22.87 0.22 -16.02 16 13 C 0.25 14.32 6.53 40.19 0.26 14.58 16 14 C -0.47 -25.86 9.13 23.46 0.21 -25.64 16 15 H 0.09 4.72 7.85 -2.91 -0.02 4.70 16 16 C 0.03 1.45 5.48 85.29 0.47 1.92 16 17 N -0.76 -40.24 11.53 21.84 0.25 -39.99 16 18 Si 0.99 38.08 29.56 68.60 2.03 40.11 16 19 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 20 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 22 N -0.54 -30.80 7.96 -186.37 -1.48 -32.28 16 23 C -0.13 -1.97 10.16 30.62 0.31 -1.66 16 24 C -0.17 -3.36 10.18 30.62 0.31 -3.05 16 25 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.04 1.09 7.28 -2.39 -0.02 1.08 16 29 H 0.09 1.55 8.11 -2.39 -0.02 1.53 16 30 H 0.41 9.63 8.85 -92.71 -0.82 8.80 16 31 H 0.41 16.01 8.84 -92.71 -0.82 15.19 16 32 H 0.13 6.83 5.31 -3.47 -0.02 6.81 16 33 H 0.13 5.35 8.06 -2.91 -0.02 5.33 16 34 H 0.11 5.40 8.06 -2.91 -0.02 5.38 16 35 H 0.28 13.32 8.29 -92.71 -0.77 12.55 16 36 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -72.56 336.51 0.85 -71.71 By element: Atomic # 1 Polarization: 44.75 SS G_CDS: -0.55 Total: 44.20 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 6.37 Total: 7.62 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -5.36 Total: -124.69 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -1.64 Total: -38.95 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -72.56 0.85 -71.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881150145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.801 kcal (2) G-P(sol) polarization free energy of solvation -72.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds