Wall clock time and date at job start Tue Mar 31 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47129 * 2 1 4 4 C 1.34639 * 116.99892 * 180.02562 * 3 2 1 5 5 O 1.21391 * 120.00135 * 359.97438 * 4 3 2 6 6 C 1.48354 * 120.00155 * 180.02562 * 4 3 2 7 7 C 1.39114 * 120.51709 * 179.97438 * 6 4 3 8 8 C 1.39862 * 118.18535 * 180.02562 * 7 6 4 9 9 N 1.38515 * 120.51042 * 180.02562 * 8 7 6 10 10 C 1.47484 * 110.99760 * 275.96763 * 9 8 7 11 11 C 1.53514 * 87.93030 * 221.29809 * 10 9 8 12 12 C 1.50701 * 114.16461 * 139.67643 * 11 10 9 13 13 H 1.07996 * 119.99555 * 266.15300 * 12 11 10 14 14 C 1.37872 * 120.00282 * 86.15886 * 12 11 10 15 15 N 1.31515 * 120.00155 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00074 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47283 * 89.99838 * 16 14 12 18 18 H 1.48493 * 109.47348 * 210.00256 * 16 14 12 19 19 H 1.48507 * 109.46908 * 330.00173 * 16 14 12 20 20 C 1.47476 * 110.99860 * 180.02562 * 9 8 7 21 21 N 1.32826 * 118.97908 * 0.02562 * 8 7 6 22 22 C 1.31853 * 120.91711 * 0.02562 * 21 8 7 23 23 C 1.50697 * 118.99214 * 180.02562 * 22 21 8 24 24 N 1.31545 * 122.01159 * 359.71058 * 22 21 8 25 25 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46930 * 299.99887 * 1 2 3 27 27 H 1.09004 * 109.47059 * 59.99488 * 1 2 3 28 28 H 1.09004 * 109.46930 * 240.00113 * 2 1 3 29 29 H 1.09000 * 109.47312 * 120.00057 * 2 1 3 30 30 H 1.07999 * 120.90495 * 0.02812 * 7 6 4 31 31 H 1.08999 * 113.47789 * 336.06770 * 10 9 8 32 32 H 1.08996 * 113.47022 * 106.53096 * 10 9 8 33 33 H 1.09000 * 114.34223 * 272.36571 * 11 10 9 34 34 H 0.96999 * 120.00171 * 179.97438 * 15 14 12 35 35 H 1.08998 * 113.48043 * 253.47020 * 20 9 8 36 36 H 1.09004 * 113.47725 * 23.87524 * 20 9 8 37 37 H 1.09000 * 109.47081 * 90.00261 * 23 22 21 38 38 H 1.09006 * 109.47160 * 209.99642 * 23 22 21 39 39 H 1.08998 * 109.47435 * 329.99666 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0883 0.5827 -0.0005 6 6 3.9159 2.9163 0.0000 7 6 5.2934 3.1109 0.0000 8 6 5.7750 4.4240 0.0011 9 7 7.1375 4.6733 0.0006 10 6 7.6839 4.6262 1.3697 11 6 8.5327 5.8547 1.0135 12 6 8.6285 6.8788 2.1150 13 1 7.9395 7.7100 2.1408 14 6 9.5958 6.7545 3.0896 15 7 9.6797 7.6485 4.0505 16 14 10.7872 5.3164 3.0452 17 1 11.9861 5.6911 2.2531 18 1 11.1970 4.9701 4.4298 19 1 10.1254 4.1446 2.4171 20 6 7.4096 6.1227 0.0025 21 7 4.9057 5.4283 0.0026 22 6 3.6071 5.2002 0.0036 23 6 2.6596 6.3721 0.0047 24 7 3.1132 3.9810 -0.0025 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.9723 2.2710 -0.0009 31 1 6.9393 4.8217 2.1413 32 1 8.2755 3.7331 1.5705 33 1 9.4954 5.6194 0.5596 34 1 10.3600 7.5608 4.7364 35 1 7.7687 6.4985 -0.9556 36 1 6.5914 6.7176 0.4086 37 1 2.4303 6.6549 -1.0227 38 1 1.7395 6.0949 0.5191 39 1 3.1236 7.2140 0.5184 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882601382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:59 Heat of formation + Delta-G solvation = 12.766615 kcal Electronic energy + Delta-G solvation = -22701.860010 eV Core-core repulsion = 19225.717308 eV Total energy + Delta-G solvation = -3476.142702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.59540 -40.46062 -39.13216 -36.91883 -33.90992 -33.49196 -32.34016 -31.90531 -29.14230 -28.43766 -26.34170 -25.19663 -24.55548 -23.05370 -21.88934 -21.17251 -19.00269 -18.67968 -17.66609 -16.98855 -16.88354 -16.79839 -15.65711 -15.43545 -15.32674 -14.64726 -14.29374 -14.24279 -13.82832 -13.57691 -13.41995 -13.09107 -12.75608 -12.54207 -12.42722 -12.22834 -11.91821 -11.84753 -11.54922 -11.08792 -11.03049 -10.93362 -10.81354 -10.47731 -10.26084 -10.11439 -9.88234 -9.62684 -9.39812 -9.20891 -8.68552 -8.45461 -6.19824 -4.21775 0.31539 0.91494 2.18159 2.25524 3.22823 3.32092 3.33386 3.61917 3.71337 3.84046 4.17167 4.32567 4.62081 4.63592 4.69100 4.89938 4.94993 5.01421 5.11020 5.34112 5.38352 5.46399 5.52024 5.53531 5.60803 5.65925 5.78891 5.91483 6.01346 6.05133 6.10849 6.29543 6.40037 6.46026 6.58569 6.89910 7.16551 7.43537 7.48320 7.58105 8.04731 8.38333 8.84545 9.41538 10.92159 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.003729 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.607302 B = 7506.311071 C = 8204.894588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.331 6.331 4 C 0.530 3.470 5 O -0.490 6.490 6 C 0.149 3.851 7 C -0.168 4.168 8 C 0.346 3.654 9 N -0.444 5.444 10 C 0.007 3.993 11 C 0.003 3.997 12 C -0.511 4.511 13 H 0.078 0.922 14 C 0.075 3.925 15 N -0.893 5.893 16 Si 0.875 3.125 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.259 1.259 20 C 0.020 3.980 21 N -0.523 5.523 22 C 0.335 3.665 23 C -0.083 4.083 24 N -0.499 5.499 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.161 0.839 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.266 0.734 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.918 -11.014 -8.241 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.246 6.246 4 C 0.372 3.628 5 O -0.376 6.376 6 C 0.005 3.995 7 C -0.194 4.194 8 C 0.104 3.896 9 N -0.163 5.163 10 C -0.119 4.119 11 C -0.017 4.017 12 C -0.549 4.549 13 H 0.097 0.903 14 C -0.128 4.128 15 N -0.529 5.529 16 Si 0.702 3.298 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.183 1.183 20 C -0.107 4.107 21 N -0.243 5.243 22 C 0.066 3.934 23 C -0.142 4.142 24 N -0.218 5.218 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.179 0.821 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.992 -11.019 -8.591 21.236 hybrid contribution 0.930 -1.330 0.544 1.711 sum -15.062 -12.349 -8.046 21.074 Atomic orbital electron populations 1.21797 0.92256 1.02951 1.03843 1.23153 0.95726 0.79858 1.02817 1.86674 1.22623 1.32197 1.83115 1.20648 0.81188 0.88075 0.72930 1.90860 1.60734 1.41108 1.44929 1.20113 0.89997 0.90955 0.98467 1.22408 0.95188 0.99078 1.02682 1.21077 0.93010 0.88376 0.87094 1.66390 1.04095 1.20655 1.25173 1.24676 0.98840 1.02847 0.85490 1.20581 0.93566 0.92599 0.94906 1.20846 1.17054 1.09490 1.07503 0.90345 1.25035 0.96917 0.95833 0.95021 1.69899 1.34389 1.34902 1.13748 0.86890 0.81803 0.83576 0.77522 1.20047 1.21331 1.18314 1.23937 1.00127 0.85858 1.00762 1.68357 1.03748 1.36400 1.15769 1.23160 0.88771 0.91724 0.89727 1.20596 0.96694 0.92905 1.03984 1.68233 1.39793 0.98803 1.14983 0.90133 0.91256 0.91311 0.90984 0.90937 0.82144 0.90772 0.90381 0.91914 0.92406 0.90811 0.88368 0.89491 0.89466 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 37.16 0.38 -0.60 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.33 -4.26 10.07 -40.33 -0.41 -4.66 16 4 C 0.53 7.79 7.97 34.89 0.28 8.07 16 5 O -0.49 -7.76 16.20 -19.18 -0.31 -8.07 16 6 C 0.15 2.34 6.78 -82.72 -0.56 1.78 16 7 C -0.17 -2.76 9.65 -38.65 -0.37 -3.14 16 8 C 0.35 6.22 5.86 -154.85 -0.91 5.31 16 9 N -0.44 -8.45 6.43 -182.67 -1.17 -9.63 16 10 C 0.01 0.15 6.64 -7.61 -0.05 0.10 16 11 C 0.00 0.07 2.96 -91.26 -0.27 -0.20 16 12 C -0.51 -13.54 9.37 -34.44 -0.32 -13.86 16 13 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 14 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 16 Si 0.88 20.33 27.14 -169.99 -4.61 15.72 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.26 -5.64 5.68 56.52 0.32 -5.32 16 20 C 0.02 0.40 6.96 -7.64 -0.05 0.35 16 21 N -0.52 -9.13 8.23 -9.98 -0.08 -9.21 16 22 C 0.34 5.13 7.64 -157.36 -1.20 3.93 16 23 C -0.08 -0.92 10.31 36.00 0.37 -0.55 16 24 N -0.50 -7.79 10.14 -7.41 -0.08 -7.86 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.16 2.48 7.73 -52.49 -0.41 2.08 16 31 H 0.07 1.58 7.85 -51.93 -0.41 1.17 16 32 H 0.08 1.53 7.11 -51.93 -0.37 1.16 16 33 H 0.06 1.38 7.04 -51.93 -0.37 1.02 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.10 2.03 6.65 -51.93 -0.35 1.68 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 334.17 15.07 5.04 5.04 Total: -1.00 -30.30 334.17 -8.76 -39.07 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.34 Total: 1.06 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -2.58 Total: 3.93 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.56 Total: -52.07 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.72 Total: -12.74 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.61 Total: 15.72 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.30 -8.76 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882601382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.834 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds