Wall clock time and date at job start Tue Mar 31 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47129 * 2 1 4 4 C 1.34639 * 116.99892 * 180.02562 * 3 2 1 5 5 O 1.21391 * 120.00135 * 359.97438 * 4 3 2 6 6 C 1.48354 * 120.00155 * 180.02562 * 4 3 2 7 7 C 1.39114 * 120.51709 * 179.97438 * 6 4 3 8 8 C 1.39862 * 118.18535 * 180.02562 * 7 6 4 9 9 N 1.38515 * 120.51042 * 180.02562 * 8 7 6 10 10 C 1.47484 * 110.99760 * 275.96763 * 9 8 7 11 11 C 1.53514 * 87.93030 * 221.29809 * 10 9 8 12 12 C 1.50701 * 114.16461 * 139.67643 * 11 10 9 13 13 H 1.07996 * 119.99555 * 266.15300 * 12 11 10 14 14 C 1.37872 * 120.00282 * 86.15886 * 12 11 10 15 15 N 1.31515 * 120.00155 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00074 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47283 * 89.99838 * 16 14 12 18 18 H 1.48493 * 109.47348 * 210.00256 * 16 14 12 19 19 H 1.48507 * 109.46908 * 330.00173 * 16 14 12 20 20 C 1.47476 * 110.99860 * 180.02562 * 9 8 7 21 21 N 1.32826 * 118.97908 * 0.02562 * 8 7 6 22 22 C 1.31853 * 120.91711 * 0.02562 * 21 8 7 23 23 C 1.50697 * 118.99214 * 180.02562 * 22 21 8 24 24 N 1.31545 * 122.01159 * 359.71058 * 22 21 8 25 25 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46930 * 299.99887 * 1 2 3 27 27 H 1.09004 * 109.47059 * 59.99488 * 1 2 3 28 28 H 1.09004 * 109.46930 * 240.00113 * 2 1 3 29 29 H 1.09000 * 109.47312 * 120.00057 * 2 1 3 30 30 H 1.07999 * 120.90495 * 0.02812 * 7 6 4 31 31 H 1.08999 * 113.47789 * 336.06770 * 10 9 8 32 32 H 1.08996 * 113.47022 * 106.53096 * 10 9 8 33 33 H 1.09000 * 114.34223 * 272.36571 * 11 10 9 34 34 H 0.96999 * 120.00171 * 179.97438 * 15 14 12 35 35 H 1.08998 * 113.48043 * 253.47020 * 20 9 8 36 36 H 1.09004 * 113.47725 * 23.87524 * 20 9 8 37 37 H 1.09000 * 109.47081 * 90.00261 * 23 22 21 38 38 H 1.09006 * 109.47160 * 209.99642 * 23 22 21 39 39 H 1.08998 * 109.47435 * 329.99666 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0883 0.5827 -0.0005 6 6 3.9159 2.9163 0.0000 7 6 5.2934 3.1109 0.0000 8 6 5.7750 4.4240 0.0011 9 7 7.1375 4.6733 0.0006 10 6 7.6839 4.6262 1.3697 11 6 8.5327 5.8547 1.0135 12 6 8.6285 6.8788 2.1150 13 1 7.9395 7.7100 2.1408 14 6 9.5958 6.7545 3.0896 15 7 9.6797 7.6485 4.0505 16 14 10.7872 5.3164 3.0452 17 1 11.9861 5.6911 2.2531 18 1 11.1970 4.9701 4.4298 19 1 10.1254 4.1446 2.4171 20 6 7.4096 6.1227 0.0025 21 7 4.9057 5.4283 0.0026 22 6 3.6071 5.2002 0.0036 23 6 2.6596 6.3721 0.0047 24 7 3.1132 3.9810 -0.0025 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.9723 2.2710 -0.0009 31 1 6.9393 4.8217 2.1413 32 1 8.2755 3.7331 1.5705 33 1 9.4954 5.6194 0.5596 34 1 10.3600 7.5608 4.7364 35 1 7.7687 6.4985 -0.9556 36 1 6.5914 6.7176 0.4086 37 1 2.4303 6.6549 -1.0227 38 1 1.7395 6.0949 0.5191 39 1 3.1236 7.2140 0.5184 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882601382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:59 Heat of formation + Delta-G solvation = -6.558741 kcal Electronic energy + Delta-G solvation = -22702.698020 eV Core-core repulsion = 19225.717308 eV Total energy + Delta-G solvation = -3476.980712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.90887 -41.62927 -40.56957 -37.96176 -35.38800 -34.82924 -34.13182 -32.59806 -30.71117 -29.61571 -27.69677 -26.81720 -26.09880 -23.88469 -23.20360 -22.34268 -20.68352 -19.89785 -19.38291 -18.42156 -18.04528 -17.87171 -17.10471 -16.75511 -16.66345 -16.10845 -15.87991 -15.22673 -15.09632 -14.98811 -14.62112 -14.55459 -13.68542 -13.66326 -13.49254 -13.31907 -13.19306 -13.02109 -12.73242 -12.57595 -12.35041 -12.22219 -12.07428 -11.88664 -11.78586 -11.68547 -11.60939 -11.22328 -10.94919 -10.70844 -10.61352 -9.99316 -8.29517 -6.36501 -0.92825 -0.38353 1.07826 1.14421 1.40827 1.42812 1.53498 2.32962 2.37616 2.52102 2.62901 2.90102 3.04876 3.46309 3.57650 3.84346 3.95571 3.97925 4.01420 4.14778 4.21031 4.30324 4.38792 4.45106 4.65381 4.70396 4.70840 4.77854 4.80415 4.89515 4.91071 4.97509 4.99510 5.25158 5.28788 5.38192 5.58176 5.60947 5.95119 6.28436 6.33649 6.70267 6.78776 7.30591 8.86117 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.003729 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.607302 B = 7506.311071 C = 8204.894588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.335 6.335 4 C 0.535 3.465 5 O -0.504 6.504 6 C 0.147 3.853 7 C -0.170 4.170 8 C 0.328 3.672 9 N -0.434 5.434 10 C 0.016 3.984 11 C -0.006 4.006 12 C -0.513 4.513 13 H 0.036 0.964 14 C 0.018 3.982 15 N -0.945 5.945 16 Si 0.940 3.060 17 H -0.267 1.267 18 H -0.290 1.290 19 H -0.233 1.233 20 C 0.029 3.971 21 N -0.540 5.540 22 C 0.329 3.671 23 C -0.081 4.081 24 N -0.496 5.496 25 H 0.106 0.894 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.169 0.831 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.267 0.733 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.993 -13.156 -9.436 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 O -0.250 6.250 4 C 0.377 3.623 5 O -0.392 6.392 6 C 0.002 3.998 7 C -0.195 4.195 8 C 0.087 3.913 9 N -0.154 5.154 10 C -0.110 4.110 11 C -0.025 4.025 12 C -0.551 4.551 13 H 0.055 0.945 14 C -0.181 4.181 15 N -0.584 5.584 16 Si 0.764 3.236 17 H -0.192 1.192 18 H -0.216 1.216 19 H -0.155 1.155 20 C -0.099 4.099 21 N -0.260 5.260 22 C 0.060 3.940 23 C -0.139 4.139 24 N -0.215 5.215 25 H 0.124 0.876 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.187 0.813 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.112 -13.166 -9.816 23.717 hybrid contribution 1.054 -0.624 0.886 1.512 sum -16.058 -13.790 -8.930 22.973 Atomic orbital electron populations 1.21834 0.90018 1.04614 1.03779 1.23546 0.97436 0.78123 1.03356 1.86668 1.21316 1.34570 1.82463 1.20437 0.81828 0.87335 0.72736 1.90850 1.61228 1.41330 1.45767 1.20365 0.89981 0.91748 0.97680 1.22432 0.95732 0.98593 1.02721 1.21077 0.92577 0.89248 0.88424 1.66349 1.05294 1.19610 1.24115 1.24370 0.98279 1.02195 0.86171 1.20542 0.95002 0.92581 0.94413 1.21014 1.15888 1.09347 1.08825 0.94537 1.25919 0.98963 0.98727 0.94471 1.70049 1.35807 1.37475 1.15063 0.85846 0.79472 0.80768 0.77559 1.19247 1.21637 1.15541 1.23758 0.98748 0.86664 1.00733 1.68375 1.04731 1.36625 1.16230 1.23958 0.88633 0.92796 0.88578 1.20766 0.96308 0.91234 1.05580 1.68343 1.39661 0.98898 1.14627 0.87570 0.91413 0.91249 0.90346 0.90564 0.81337 0.92291 0.88861 0.90865 0.92377 0.89236 0.89639 0.87352 0.87711 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.29 71.98 0.74 -0.79 16 2 C 0.05 0.79 6.19 71.98 0.45 1.24 16 3 O -0.34 -8.05 10.07 -55.48 -0.56 -8.61 16 4 C 0.53 14.95 7.97 70.52 0.56 15.51 16 5 O -0.50 -15.26 16.20 20.19 0.33 -14.93 16 6 C 0.15 4.45 6.78 41.82 0.28 4.73 16 7 C -0.17 -5.38 9.65 22.87 0.22 -5.16 16 8 C 0.33 11.48 5.86 133.28 0.78 12.27 16 9 N -0.43 -16.00 6.43 -731.83 -4.71 -20.71 16 10 C 0.02 0.65 6.64 83.53 0.55 1.20 16 11 C -0.01 -0.26 2.96 -11.21 -0.03 -0.29 16 12 C -0.51 -27.82 9.37 25.60 0.24 -27.58 16 13 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 14 C 0.02 0.97 5.47 84.65 0.46 1.43 16 15 N -0.94 -57.09 13.96 21.45 0.30 -56.79 16 16 Si 0.94 41.53 27.14 68.60 1.86 43.39 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.23 -9.18 5.68 99.48 0.57 -8.62 16 20 C 0.03 1.12 6.96 83.52 0.58 1.70 16 21 N -0.54 -18.45 8.23 -185.48 -1.53 -19.98 16 22 C 0.33 9.62 7.64 138.81 1.06 10.68 16 23 C -0.08 -1.62 10.31 71.24 0.73 -0.89 16 24 N -0.50 -14.73 10.14 -177.37 -1.80 -16.53 16 25 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.17 4.98 7.73 -2.91 -0.02 4.95 16 31 H 0.06 2.51 7.85 -2.39 -0.02 2.49 16 32 H 0.09 3.42 7.11 -2.39 -0.02 3.40 16 33 H 0.07 3.09 7.04 -2.39 -0.02 3.07 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.09 3.58 6.65 -2.39 -0.02 3.56 16 37 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -66.21 334.17 1.45 -64.76 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.92 Total: 15.33 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 6.63 Total: 14.06 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -7.73 Total: -114.00 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.23 Total: -23.54 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.86 Total: 43.39 kcal Total: -66.21 1.45 -64.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882601382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.200 kcal (2) G-P(sol) polarization free energy of solvation -66.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds