Wall clock time and date at job start Tue Mar 31 2020 06:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 119.99848 * 2 1 4 4 O 1.21594 * 119.99673 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00120 * 179.97438 * 3 2 1 6 6 C 1.39975 * 119.99688 * 184.61756 * 5 3 2 7 7 C 1.38990 * 119.99833 * 144.88762 * 6 5 3 8 8 C 1.38210 * 120.22629 * 180.02562 * 7 6 5 9 9 C 1.38026 * 120.22013 * 359.97438 * 8 7 6 10 10 C 1.39577 * 119.99359 * 359.97438 * 9 8 7 11 11 C 1.47869 * 120.10580 * 180.02562 * 10 9 8 12 12 O 1.21550 * 119.99701 * 179.97438 * 11 10 9 13 13 N 1.34771 * 120.00307 * 359.97438 * 11 10 9 14 14 C 1.46499 * 120.00105 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47209 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47082 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00250 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99924 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00400 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00002 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47410 * 90.00134 * 20 18 16 22 22 H 1.48499 * 109.47487 * 210.00090 * 20 18 16 23 23 H 1.48507 * 109.47217 * 329.99981 * 20 18 16 24 24 C 1.38590 * 120.00371 * 324.90159 * 6 5 3 25 25 H 1.09000 * 109.47191 * 60.00330 * 1 2 3 26 26 H 1.09000 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47551 * 300.00072 * 1 2 3 28 28 H 0.96991 * 120.00609 * 179.97438 * 2 1 3 29 29 H 0.96995 * 119.99950 * 4.61753 * 5 3 2 30 30 H 1.08002 * 119.88469 * 0.02562 * 7 6 5 31 31 H 1.07993 * 119.89041 * 179.97438 * 8 7 6 32 32 H 1.08001 * 119.99954 * 179.97438 * 9 8 7 33 33 H 0.97003 * 120.00261 * 359.97438 * 13 11 10 34 34 H 1.09000 * 109.46790 * 300.00106 * 14 13 11 35 35 H 1.09003 * 109.46805 * 59.99851 * 14 13 11 36 36 H 1.09000 * 109.47159 * 299.99669 * 15 14 13 37 37 H 1.08995 * 109.47677 * 59.99806 * 15 14 13 38 38 H 0.96996 * 120.00320 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.10679 * 359.71146 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5308 2.2202 -0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.1863 2.3757 0.0981 7 6 5.3863 2.4293 0.7975 8 6 6.0808 3.6201 0.8973 9 6 5.5876 4.7639 0.3026 10 6 4.3841 4.7202 -0.4029 11 6 3.8538 5.9440 -1.0414 12 8 2.8057 5.9036 -1.6557 13 7 4.5325 7.1041 -0.9424 14 6 4.0074 8.3164 -1.5755 15 6 4.9622 9.4828 -1.3141 16 6 4.4217 10.7300 -1.9648 17 1 3.4905 10.6941 -2.5107 18 6 5.1160 11.9168 -1.8634 19 7 6.2497 11.9607 -1.1983 20 14 4.4463 13.4626 -2.6706 21 1 3.5691 14.1814 -1.7121 22 1 5.5747 14.3436 -3.0653 23 1 3.6628 13.0917 -3.8764 24 6 3.6826 3.5187 -0.5023 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9500 -0.8399 0.0004 29 1 3.9717 0.3300 -0.0667 30 1 5.7772 1.5375 1.2646 31 1 7.0124 3.6557 1.4423 32 1 6.1331 5.6926 0.3832 33 1 5.3687 7.1365 -0.4518 34 1 3.9168 8.1551 -2.6497 35 1 3.0271 8.5483 -1.1590 36 1 5.0532 9.6442 -0.2399 37 1 5.9422 9.2507 -1.7308 38 1 6.7383 12.7956 -1.1272 39 1 2.7526 3.4780 -1.0500 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907320131.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:54 Heat of formation + Delta-G solvation = -40.410706 kcal Electronic energy + Delta-G solvation = -21901.518796 eV Core-core repulsion = 18423.070153 eV Total energy + Delta-G solvation = -3478.448644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91506 -39.58756 -38.10259 -35.14703 -34.85031 -34.82029 -32.82239 -31.25341 -30.14651 -29.19371 -26.78407 -25.15613 -23.41858 -22.89227 -21.15673 -20.98576 -20.18144 -18.95891 -18.18233 -16.56720 -16.45803 -16.06309 -15.80333 -15.44981 -15.03121 -14.85456 -14.76631 -14.42427 -14.26574 -13.75898 -13.43036 -13.18493 -13.12737 -12.61397 -12.50088 -12.26956 -11.98734 -11.67849 -11.15057 -11.00637 -10.66037 -10.60792 -10.28861 -10.24627 -9.78602 -9.54219 -9.43705 -9.17325 -9.00470 -8.49080 -8.33390 -8.26278 -6.06111 -4.08566 0.85315 1.27556 2.25206 2.77590 3.17458 3.32435 3.38218 3.42556 3.65205 3.85230 4.00545 4.45024 4.73965 4.80845 4.81468 5.09391 5.13832 5.19497 5.30968 5.33893 5.41717 5.47734 5.78542 5.98227 6.04766 6.16995 6.27477 6.37165 6.40885 6.48140 6.53837 6.79286 6.86230 6.98004 7.52926 7.55903 7.65848 7.92480 8.06911 8.19825 8.31909 8.70948 8.97406 9.56028 11.05560 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028592 B = 0.002686 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.060035 B =10422.714954 C =11306.801061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.747 5.747 3 C 0.697 3.303 4 O -0.560 6.560 5 N -0.685 5.685 6 C 0.148 3.852 7 C -0.128 4.128 8 C -0.108 4.108 9 C -0.102 4.102 10 C -0.108 4.108 11 C 0.547 3.453 12 O -0.541 6.541 13 N -0.716 5.716 14 C 0.121 3.879 15 C 0.012 3.988 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.063 4.063 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.398 0.602 29 H 0.406 0.594 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.397 0.603 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.460 -28.420 5.772 29.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.403 5.403 3 C 0.397 3.603 4 O -0.435 6.435 5 N -0.333 5.333 6 C 0.054 3.946 7 C -0.149 4.149 8 C -0.126 4.126 9 C -0.121 4.121 10 C -0.112 4.112 11 C 0.333 3.667 12 O -0.420 6.420 13 N -0.366 5.366 14 C -0.001 4.001 15 C -0.025 4.025 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.085 4.085 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.231 0.769 29 H 0.241 0.759 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.231 0.769 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.741 -27.351 5.371 28.008 hybrid contribution 0.647 0.025 -0.096 0.654 sum -2.094 -27.327 5.275 27.910 Atomic orbital electron populations 1.21459 0.77542 1.02144 1.02793 1.44894 1.08045 1.06802 1.80517 1.16011 0.81408 0.84728 0.78146 1.91041 1.67294 1.29731 1.55451 1.42477 1.05001 1.08395 1.77472 1.17337 0.93065 0.85648 0.98550 1.20981 0.95508 0.99042 0.99339 1.20852 1.00065 0.91755 0.99959 1.21408 0.94950 0.99073 0.96698 1.20034 0.95921 0.94379 1.00819 1.18240 0.84458 0.83343 0.80681 1.90758 1.22917 1.85674 1.42600 1.46252 1.25898 1.09534 1.54951 1.21758 0.98749 0.82937 0.96641 1.19331 0.94320 0.91091 0.97786 1.21058 1.07723 0.93344 1.33767 0.92215 1.24996 0.94869 0.99141 0.95322 1.69955 1.14974 1.26892 1.41544 0.86508 0.78494 0.82720 0.79801 1.20567 1.21197 1.19732 1.21420 1.00318 0.90151 0.96565 0.91967 0.90480 0.92080 0.76925 0.75865 0.85537 0.84953 0.85101 0.76861 0.92401 0.92381 0.95887 0.95884 0.92878 0.82875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.66 10.70 59.85 0.64 1.30 16 2 N -0.75 -5.08 5.72 -72.07 -0.41 -5.49 16 3 C 0.70 7.82 8.41 -86.92 -0.73 7.09 16 4 O -0.56 -9.29 13.78 5.28 0.07 -9.22 16 5 N -0.69 -6.09 5.34 -14.25 -0.08 -6.17 16 6 C 0.15 1.74 6.30 -83.73 -0.53 1.21 16 7 C -0.13 -1.18 9.96 -39.31 -0.39 -1.57 16 8 C -0.11 -1.05 10.02 -39.67 -0.40 -1.45 16 9 C -0.10 -1.26 9.54 -39.16 -0.37 -1.63 16 10 C -0.11 -1.71 5.87 -104.99 -0.62 -2.32 16 11 C 0.55 10.68 7.77 -12.32 -0.10 10.59 16 12 O -0.54 -12.64 16.35 5.32 0.09 -12.55 16 13 N -0.72 -13.58 5.51 -61.24 -0.34 -13.92 16 14 C 0.12 2.71 5.61 -4.04 -0.02 2.69 16 15 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 16 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 17 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 20 Si 0.90 21.73 29.54 -169.99 -5.02 16.70 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.06 -0.99 8.23 -38.99 -0.32 -1.31 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.40 1.18 8.85 -40.82 -0.36 0.82 16 29 H 0.41 1.84 8.84 -40.82 -0.36 1.48 16 30 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.42 6.40 -52.49 -0.34 1.08 16 33 H 0.40 6.42 6.50 -40.82 -0.27 6.16 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.15 2.84 5.82 -52.49 -0.31 2.54 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -37.37 338.47 -8.21 -45.58 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.97 Total: 4.34 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -3.39 Total: 1.29 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.09 Total: -51.25 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.16 Total: -21.77 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.37 -8.21 -45.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907320131.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.169 kcal (2) G-P(sol) polarization free energy of solvation -37.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds