Wall clock time and date at job start Tue Mar 31 2020 06:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 119.99848 * 2 1 4 4 O 1.21594 * 119.99673 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00120 * 179.97438 * 3 2 1 6 6 C 1.39975 * 119.99688 * 184.61756 * 5 3 2 7 7 C 1.38990 * 119.99833 * 144.88762 * 6 5 3 8 8 C 1.38210 * 120.22629 * 180.02562 * 7 6 5 9 9 C 1.38026 * 120.22013 * 359.97438 * 8 7 6 10 10 C 1.39577 * 119.99359 * 359.97438 * 9 8 7 11 11 C 1.47869 * 120.10580 * 180.02562 * 10 9 8 12 12 O 1.21550 * 119.99701 * 179.97438 * 11 10 9 13 13 N 1.34771 * 120.00307 * 359.97438 * 11 10 9 14 14 C 1.46499 * 120.00105 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47209 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47082 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00250 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99924 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00400 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00002 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47410 * 90.00134 * 20 18 16 22 22 H 1.48499 * 109.47487 * 210.00090 * 20 18 16 23 23 H 1.48507 * 109.47217 * 329.99981 * 20 18 16 24 24 C 1.38590 * 120.00371 * 324.90159 * 6 5 3 25 25 H 1.09000 * 109.47191 * 60.00330 * 1 2 3 26 26 H 1.09000 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47551 * 300.00072 * 1 2 3 28 28 H 0.96991 * 120.00609 * 179.97438 * 2 1 3 29 29 H 0.96995 * 119.99950 * 4.61753 * 5 3 2 30 30 H 1.08002 * 119.88469 * 0.02562 * 7 6 5 31 31 H 1.07993 * 119.89041 * 179.97438 * 8 7 6 32 32 H 1.08001 * 119.99954 * 179.97438 * 9 8 7 33 33 H 0.97003 * 120.00261 * 359.97438 * 13 11 10 34 34 H 1.09000 * 109.46790 * 300.00106 * 14 13 11 35 35 H 1.09003 * 109.46805 * 59.99851 * 14 13 11 36 36 H 1.09000 * 109.47159 * 299.99669 * 15 14 13 37 37 H 1.08995 * 109.47677 * 59.99806 * 15 14 13 38 38 H 0.96996 * 120.00320 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.10679 * 359.71146 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5308 2.2202 -0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.1863 2.3757 0.0981 7 6 5.3863 2.4293 0.7975 8 6 6.0808 3.6201 0.8973 9 6 5.5876 4.7639 0.3026 10 6 4.3841 4.7202 -0.4029 11 6 3.8538 5.9440 -1.0414 12 8 2.8057 5.9036 -1.6557 13 7 4.5325 7.1041 -0.9424 14 6 4.0074 8.3164 -1.5755 15 6 4.9622 9.4828 -1.3141 16 6 4.4217 10.7300 -1.9648 17 1 3.4905 10.6941 -2.5107 18 6 5.1160 11.9168 -1.8634 19 7 6.2497 11.9607 -1.1983 20 14 4.4463 13.4626 -2.6706 21 1 3.5691 14.1814 -1.7121 22 1 5.5747 14.3436 -3.0653 23 1 3.6628 13.0917 -3.8764 24 6 3.6826 3.5187 -0.5023 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9500 -0.8399 0.0004 29 1 3.9717 0.3300 -0.0667 30 1 5.7772 1.5375 1.2646 31 1 7.0124 3.6557 1.4423 32 1 6.1331 5.6926 0.3832 33 1 5.3687 7.1365 -0.4518 34 1 3.9168 8.1551 -2.6497 35 1 3.0271 8.5483 -1.1590 36 1 5.0532 9.6442 -0.2399 37 1 5.9422 9.2507 -1.7308 38 1 6.7383 12.7956 -1.1272 39 1 2.7526 3.4780 -1.0500 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907320131.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:54 Heat of formation + Delta-G solvation = -70.043496 kcal Electronic energy + Delta-G solvation = -21902.803771 eV Core-core repulsion = 18423.070153 eV Total energy + Delta-G solvation = -3479.733618 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.83452 -40.90364 -39.25167 -36.68116 -35.94613 -35.73956 -34.84396 -32.46648 -31.47560 -30.55847 -27.48034 -26.97290 -24.83133 -23.78155 -22.87644 -22.01108 -21.55578 -19.75262 -19.36732 -18.52606 -17.50604 -17.25326 -16.81004 -16.67021 -16.51365 -16.43469 -15.95312 -15.69815 -15.26625 -14.95389 -14.76200 -14.60718 -14.29486 -14.11297 -13.59053 -13.26528 -13.07635 -12.95587 -12.82577 -12.69991 -12.53592 -12.27566 -11.71335 -11.63284 -11.48049 -11.23645 -10.97921 -10.61363 -10.26603 -10.19414 -9.88217 -9.17157 -8.24780 -6.35193 -0.17949 0.32482 1.41170 1.41926 1.53088 1.53822 1.75654 2.04082 2.17790 2.43564 2.88263 3.09643 3.20960 3.68592 3.94234 4.13328 4.21162 4.38291 4.41881 4.44525 4.47366 4.55948 4.62296 4.80678 4.89210 4.96447 5.18523 5.23690 5.29178 5.34629 5.41209 5.42696 5.48445 5.55747 5.76770 5.90329 5.95681 6.14738 6.55211 6.76882 6.95754 7.17554 7.33724 7.43937 8.87139 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028592 B = 0.002686 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.060035 B =10422.714954 C =11306.801061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.726 5.726 3 C 0.687 3.313 4 O -0.622 6.622 5 N -0.668 5.668 6 C 0.145 3.855 7 C -0.101 4.101 8 C -0.095 4.095 9 C -0.102 4.102 10 C -0.136 4.136 11 C 0.544 3.456 12 O -0.592 6.592 13 N -0.708 5.708 14 C 0.139 3.861 15 C 0.025 3.975 16 C -0.549 4.549 17 H 0.057 0.943 18 C 0.008 3.992 19 N -0.924 5.924 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.268 1.268 24 C -0.091 4.091 25 H 0.042 0.958 26 H 0.121 0.879 27 H 0.046 0.954 28 H 0.420 0.580 29 H 0.430 0.570 30 H 0.177 0.823 31 H 0.176 0.824 32 H 0.143 0.857 33 H 0.411 0.589 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.011 0.989 37 H 0.013 0.987 38 H 0.267 0.733 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 -30.710 7.087 31.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.383 5.383 3 C 0.387 3.613 4 O -0.501 6.501 5 N -0.318 5.318 6 C 0.049 3.951 7 C -0.121 4.121 8 C -0.113 4.113 9 C -0.121 4.121 10 C -0.139 4.139 11 C 0.333 3.667 12 O -0.474 6.474 13 N -0.359 5.359 14 C 0.015 3.985 15 C -0.013 4.013 16 C -0.587 4.587 17 H 0.075 0.925 18 C -0.191 4.191 19 N -0.564 5.564 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.193 1.193 24 C -0.113 4.113 25 H 0.061 0.939 26 H 0.139 0.861 27 H 0.064 0.936 28 H 0.257 0.743 29 H 0.270 0.730 30 H 0.194 0.806 31 H 0.193 0.807 32 H 0.161 0.839 33 H 0.249 0.751 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.799 -29.738 6.703 30.495 hybrid contribution 0.087 0.598 -0.452 0.754 sum -0.712 -29.141 6.251 29.812 Atomic orbital electron populations 1.21586 0.77109 1.04457 1.01140 1.44756 1.08305 1.06456 1.78755 1.16375 0.82065 0.84944 0.77880 1.91021 1.68668 1.32303 1.58144 1.42253 1.04277 1.08644 1.76617 1.17461 0.94030 0.85295 0.98265 1.21505 0.93278 1.00701 0.96662 1.21365 1.01040 0.90491 0.98451 1.21616 0.93433 1.01042 0.96042 1.19728 0.98175 0.92494 1.03530 1.18931 0.83631 0.84376 0.79782 1.90716 1.25197 1.86516 1.44957 1.46018 1.26459 1.08526 1.54873 1.21297 0.97494 0.83518 0.96153 1.19128 0.94174 0.91423 0.96548 1.21444 1.08015 0.94851 1.34405 0.92523 1.25861 0.95079 1.02398 0.95744 1.70048 1.15959 1.28023 1.42343 0.85435 0.78090 0.78548 0.78903 1.19762 1.20228 1.19264 1.21214 0.99577 0.92109 0.98358 0.93941 0.86059 0.93563 0.74260 0.72984 0.80608 0.80652 0.83891 0.75113 0.93480 0.93737 0.97070 0.96885 0.92442 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.20 10.70 127.77 1.37 2.57 16 2 N -0.73 -8.88 5.72 -500.18 -2.86 -11.74 16 3 C 0.69 15.35 8.41 179.05 1.51 16.86 16 4 O -0.62 -22.05 13.78 -4.01 -0.06 -22.11 16 5 N -0.67 -10.66 5.34 -317.26 -1.70 -12.36 16 6 C 0.14 3.17 6.30 38.10 0.24 3.41 16 7 C -0.10 -1.40 9.96 22.44 0.22 -1.18 16 8 C -0.10 -1.43 10.02 22.21 0.22 -1.20 16 9 C -0.10 -2.34 9.54 22.54 0.22 -2.12 16 10 C -0.14 -4.44 5.87 -20.10 -0.12 -4.56 16 11 C 0.54 22.62 7.77 86.79 0.67 23.29 16 12 O -0.59 -30.02 16.35 -3.87 -0.06 -30.08 16 13 N -0.71 -28.01 5.51 -465.96 -2.57 -30.58 16 14 C 0.14 6.53 5.61 86.38 0.48 7.01 16 15 C 0.02 1.30 5.09 29.85 0.15 1.45 16 16 C -0.55 -31.70 9.11 25.60 0.23 -31.47 16 17 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 18 C 0.01 0.47 5.46 84.65 0.46 0.93 16 19 N -0.92 -54.81 13.29 21.45 0.28 -54.52 16 20 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 24 C -0.09 -2.98 8.23 22.66 0.19 -2.79 16 25 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.42 1.26 8.85 -92.71 -0.82 0.44 16 29 H 0.43 2.38 8.84 -92.71 -0.82 1.56 16 30 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 31 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 32 H 0.14 2.83 6.40 -2.91 -0.02 2.81 16 33 H 0.41 13.58 6.50 -92.71 -0.60 12.98 16 34 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.04 2.19 8.14 -2.39 -0.02 2.18 16 36 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 39 H 0.11 4.60 5.82 -2.91 -0.02 4.58 16 Total: -1.00 -87.87 338.47 -0.21 -88.08 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -1.13 Total: 14.45 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 5.85 Total: 12.19 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -6.84 Total: -109.20 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.12 Total: -52.19 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -87.87 -0.21 -88.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907320131.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.035 kcal (2) G-P(sol) polarization free energy of solvation -87.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds