Wall clock time and date at job start Tue Mar 31 2020 06:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 120.00079 * 2 1 4 4 Si 1.86298 * 109.46890 * 269.99662 * 3 2 1 5 5 C 1.86304 * 109.46982 * 60.00259 * 4 3 2 6 6 C 1.86304 * 109.46868 * 179.97438 * 4 3 2 7 7 C 1.86296 * 109.47586 * 300.00049 * 4 3 2 8 8 C 1.34773 * 119.99926 * 179.97438 * 2 1 3 9 9 O 1.21612 * 120.00112 * 185.46515 * 8 2 1 10 10 C 1.47436 * 120.00032 * 5.46123 * 8 2 1 11 11 C 1.39221 * 120.28313 * 309.25674 * 10 8 2 12 12 C 1.38224 * 120.09301 * 180.28218 * 11 10 8 13 13 C 1.38832 * 120.67129 * 359.71337 * 12 11 10 14 14 C 1.37594 * 120.57205 * 0.02562 * 13 12 11 15 15 C 1.40707 * 119.88236 * 0.02562 * 14 13 12 16 16 C 1.40890 * 120.32652 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99799 * 212.88294 * 16 15 14 18 18 C 1.40272 * 119.99841 * 32.88969 * 16 15 14 19 19 N 1.30630 * 120.00266 * 23.40073 * 18 16 15 20 20 Si 1.86803 * 119.99775 * 203.40342 * 18 16 15 21 21 H 1.48498 * 109.47076 * 269.99791 * 20 18 16 22 22 H 1.48499 * 109.47092 * 29.99737 * 20 18 16 23 23 H 1.48505 * 109.47020 * 149.99854 * 20 18 16 24 24 H 1.08993 * 109.47199 * 264.35187 * 1 2 3 25 25 H 1.09000 * 109.47028 * 24.35065 * 1 2 3 26 26 H 1.08999 * 109.46908 * 144.34910 * 1 2 3 27 27 H 1.08999 * 109.46769 * 29.99725 * 3 2 1 28 28 H 1.09000 * 109.46748 * 149.99835 * 3 2 1 29 29 H 1.09002 * 109.47143 * 59.99756 * 5 4 3 30 30 H 1.09007 * 109.46734 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.46931 * 299.99550 * 5 4 3 32 32 H 1.08994 * 109.46958 * 60.00608 * 6 4 3 33 33 H 1.09006 * 109.46671 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.47321 * 300.00283 * 6 4 3 35 35 H 1.09001 * 109.47182 * 59.99926 * 7 4 3 36 36 H 1.08997 * 109.47785 * 179.97438 * 7 4 3 37 37 H 1.09000 * 109.47178 * 300.00516 * 7 4 3 38 38 H 1.07997 * 119.95897 * 359.97438 * 11 10 8 39 39 H 1.08001 * 119.66708 * 179.74196 * 12 11 10 40 40 H 1.08005 * 119.71120 * 180.02562 * 13 12 11 41 41 H 1.08006 * 120.05650 * 180.02562 * 14 13 12 42 42 H 0.96997 * 119.99841 * 5.51885 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 14 2.5081 1.8064 -1.7565 5 6 0.8802 2.0292 -2.6347 6 6 3.4390 3.4202 -1.7564 7 6 3.5149 0.5081 -2.6347 8 6 2.1389 -1.1672 0.0005 9 8 3.3508 -1.1696 0.1008 10 6 1.4067 -2.4412 -0.1204 11 6 0.3240 -2.7104 0.7123 12 6 -0.3560 -3.9086 0.5995 13 6 0.0248 -4.8528 -0.3444 14 6 1.0874 -4.6130 -1.1850 15 6 1.7970 -3.4017 -1.0899 16 6 2.8869 -3.1467 -1.9456 17 1 3.7228 -2.5597 -1.5949 18 6 2.8860 -3.6550 -3.2529 19 7 1.7562 -3.9518 -3.8376 20 14 4.5006 -3.9077 -4.1578 21 1 4.8484 -2.6719 -4.9041 22 1 5.5743 -4.2133 -3.1785 23 1 4.3626 -5.0388 -5.1101 24 1 -0.3633 -0.1011 1.0226 25 1 -0.3633 0.9362 -0.4237 26 1 -0.3633 -0.8351 -0.5990 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1383 0.5139 29 1 0.2912 2.7889 -2.1209 30 1 1.0620 2.3443 -3.6623 31 1 0.3353 1.0852 -2.6347 32 1 4.3913 3.2903 -1.2425 33 1 3.6211 3.7346 -2.7842 34 1 2.8495 4.1797 -1.2428 35 1 2.9699 -0.4359 -2.6347 36 1 3.6963 0.8224 -3.6625 37 1 4.4673 0.3777 -2.1208 38 1 0.0180 -1.9844 1.4509 39 1 -1.1923 -4.1121 1.2518 40 1 -0.5178 -5.7837 -0.4194 41 1 1.3762 -5.3533 -1.9165 42 1 0.9152 -3.7466 -3.4002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911718519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:53 Heat of formation + Delta-G solvation = -59.018644 kcal Electronic energy + Delta-G solvation = -22004.427890 eV Core-core repulsion = 18991.919137 eV Total energy + Delta-G solvation = -3012.508754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.21656 -37.04498 -34.76021 -33.85048 -30.24358 -29.47002 -28.48624 -27.57282 -27.13030 -26.82157 -25.74412 -24.69188 -21.71807 -21.00269 -18.79717 -17.71614 -16.23212 -15.50376 -15.09316 -14.82373 -14.14047 -13.92840 -13.48535 -13.08950 -12.98501 -12.74551 -12.65406 -12.61897 -12.45142 -12.32798 -12.08800 -12.05823 -11.95952 -11.81038 -11.66001 -11.54490 -11.18910 -10.87547 -10.73962 -10.39656 -10.27931 -10.10670 -9.75329 -9.58320 -9.46059 -9.05132 -8.64270 -7.76135 -7.64856 -7.58480 -7.20002 -4.50556 2.39633 2.74160 2.86684 3.00204 3.06202 3.17547 3.27383 3.39520 3.82153 3.86562 3.97302 4.01314 4.54157 5.37841 5.43648 5.56128 5.66205 5.69152 5.76755 5.77191 5.84677 5.92982 6.02919 6.16818 6.17926 6.21309 6.28248 6.34878 6.41405 6.46669 6.59057 6.77695 7.00600 7.13564 7.19345 7.30957 7.52725 7.63565 7.73348 7.89890 8.04203 8.19012 8.24025 8.71396 8.82938 9.22880 10.01028 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.007837 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.510216 B = 3571.711542 C = 5013.213200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.608 5.608 3 C -0.168 4.168 4 Si 0.981 3.019 5 C -0.441 4.441 6 C -0.442 4.442 7 C -0.441 4.441 8 C 0.582 3.418 9 O -0.544 6.544 10 C -0.256 4.256 11 C -0.049 4.049 12 C -0.258 4.258 13 C -0.076 4.076 14 C -0.205 4.205 15 C 0.131 3.869 16 C -0.503 4.503 17 H 0.100 0.900 18 C 0.040 3.960 19 N -0.791 5.791 20 Si 1.060 2.940 21 H -0.274 1.274 22 H -0.273 1.273 23 H -0.274 1.274 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.307 10.244 1.653 10.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.342 5.342 3 C -0.338 4.338 4 Si 1.177 2.823 5 C -0.549 4.549 6 C -0.550 4.550 7 C -0.549 4.549 8 C 0.375 3.625 9 O -0.422 6.422 10 C -0.260 4.260 11 C -0.068 4.068 12 C -0.277 4.277 13 C -0.095 4.095 14 C -0.224 4.224 15 C 0.127 3.873 16 C -0.530 4.530 17 H 0.118 0.882 18 C -0.182 4.182 19 N -0.414 5.414 20 Si 0.884 3.116 21 H -0.200 1.200 22 H -0.197 1.197 23 H -0.199 1.199 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.057 9.665 0.293 9.727 hybrid contribution -0.972 0.505 1.571 1.916 sum -2.029 10.169 1.865 10.536 Atomic orbital electron populations 1.21841 0.80399 1.02822 1.01141 1.47414 1.06168 1.05036 1.75629 1.26279 1.00616 0.88803 1.18125 0.79852 0.67861 0.66750 0.67814 1.26078 1.16829 1.04443 1.07509 1.26058 1.08467 1.16444 1.04047 1.26070 1.09472 1.13297 1.06092 1.18354 0.86777 0.83128 0.74280 1.90620 1.14480 1.87182 1.49886 1.19391 1.02138 0.95421 1.09058 1.20732 0.93489 0.96062 0.96536 1.20229 1.05026 0.97174 1.05308 1.20726 0.96207 0.97277 0.95280 1.21162 1.00240 0.97662 1.03347 1.17411 0.90493 0.88944 0.90463 1.20947 1.04554 1.29468 0.98063 0.88221 1.27085 1.03986 0.91067 0.96083 1.70375 1.00346 1.31039 1.39633 0.83711 0.73705 0.78070 0.76140 1.19955 1.19742 1.19880 0.93660 0.91857 0.90171 0.91285 0.89603 0.91887 0.91596 0.90842 0.91273 0.91415 0.91672 0.89572 0.92547 0.91358 0.88774 0.88980 0.89024 0.87674 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 8.79 59.85 0.53 1.76 16 2 N -0.61 -10.96 2.37 -120.35 -0.29 -11.24 16 3 C -0.17 -2.52 4.65 59.85 0.28 -2.25 16 4 Si 0.98 12.90 12.45 -169.99 -2.12 10.78 16 5 C -0.44 -5.54 8.09 101.05 0.82 -4.72 16 6 C -0.44 -4.87 8.65 101.05 0.87 -3.99 16 7 C -0.44 -7.78 8.62 101.05 0.87 -6.91 16 8 C 0.58 13.22 6.25 -12.52 -0.08 13.14 16 9 O -0.54 -13.81 14.78 5.27 0.08 -13.73 16 10 C -0.26 -6.11 4.90 -104.37 -0.51 -6.62 16 11 C -0.05 -1.05 7.81 -39.22 -0.31 -1.36 16 12 C -0.26 -5.39 10.03 -39.37 -0.39 -5.78 16 13 C -0.08 -1.67 10.01 -39.60 -0.40 -2.07 16 14 C -0.20 -5.04 8.00 -38.88 -0.31 -5.36 16 15 C 0.13 3.39 5.15 -106.54 -0.55 2.84 16 16 C -0.50 -13.34 7.80 -37.81 -0.30 -13.64 16 17 H 0.10 2.79 6.24 -52.49 -0.33 2.46 16 18 C 0.04 1.02 4.94 -17.30 -0.09 0.93 16 19 N -0.79 -20.38 12.57 55.56 0.70 -19.68 16 20 Si 1.06 22.25 30.00 -169.99 -5.10 17.16 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H 0.04 0.62 7.13 -51.93 -0.37 0.25 16 25 H 0.06 0.77 7.20 -51.93 -0.37 0.39 16 26 H 0.08 1.35 6.32 -51.93 -0.33 1.03 16 27 H 0.07 0.83 7.89 -51.93 -0.41 0.42 16 28 H 0.09 1.41 7.17 -51.93 -0.37 1.04 16 29 H 0.06 0.67 7.96 -51.93 -0.41 0.26 16 30 H 0.06 0.78 7.96 -51.93 -0.41 0.37 16 31 H 0.07 1.04 7.62 -51.93 -0.40 0.64 16 32 H 0.07 0.76 7.96 -51.93 -0.41 0.35 16 33 H 0.07 0.71 7.96 -51.93 -0.41 0.29 16 34 H 0.06 0.62 7.96 -51.93 -0.41 0.21 16 35 H 0.09 1.85 7.33 -51.93 -0.38 1.47 16 36 H 0.06 0.89 7.96 -51.93 -0.41 0.48 16 37 H 0.07 1.25 7.96 -51.93 -0.41 0.83 16 38 H 0.09 1.75 6.43 -52.49 -0.34 1.42 16 39 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 40 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 41 H 0.11 2.65 6.99 -52.48 -0.37 2.29 16 42 H 0.30 7.80 6.86 -40.82 -0.28 7.52 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -29.21 346.23 -7.55 -36.75 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.48 Total: 8.76 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 0.44 Total: -34.01 kcal Atomic # 7 Polarization: -31.34 SS G_CDS: 0.41 Total: -30.93 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.08 Total: -13.73 kcal Atomic # 14 Polarization: 35.15 SS G_CDS: -7.22 Total: 27.94 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.21 -7.55 -36.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911718519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.264 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds