Wall clock time and date at job start Tue Mar 31 2020 06:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 120.00079 * 2 1 4 4 Si 1.86298 * 109.46890 * 269.99662 * 3 2 1 5 5 C 1.86304 * 109.46982 * 60.00259 * 4 3 2 6 6 C 1.86304 * 109.46868 * 179.97438 * 4 3 2 7 7 C 1.86296 * 109.47586 * 300.00049 * 4 3 2 8 8 C 1.34773 * 119.99926 * 179.97438 * 2 1 3 9 9 O 1.21612 * 120.00112 * 185.46515 * 8 2 1 10 10 C 1.47436 * 120.00032 * 5.46123 * 8 2 1 11 11 C 1.39221 * 120.28313 * 309.25674 * 10 8 2 12 12 C 1.38224 * 120.09301 * 180.28218 * 11 10 8 13 13 C 1.38832 * 120.67129 * 359.71337 * 12 11 10 14 14 C 1.37594 * 120.57205 * 0.02562 * 13 12 11 15 15 C 1.40707 * 119.88236 * 0.02562 * 14 13 12 16 16 C 1.40890 * 120.32652 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99799 * 212.88294 * 16 15 14 18 18 C 1.40272 * 119.99841 * 32.88969 * 16 15 14 19 19 N 1.30630 * 120.00266 * 23.40073 * 18 16 15 20 20 Si 1.86803 * 119.99775 * 203.40342 * 18 16 15 21 21 H 1.48498 * 109.47076 * 269.99791 * 20 18 16 22 22 H 1.48499 * 109.47092 * 29.99737 * 20 18 16 23 23 H 1.48505 * 109.47020 * 149.99854 * 20 18 16 24 24 H 1.08993 * 109.47199 * 264.35187 * 1 2 3 25 25 H 1.09000 * 109.47028 * 24.35065 * 1 2 3 26 26 H 1.08999 * 109.46908 * 144.34910 * 1 2 3 27 27 H 1.08999 * 109.46769 * 29.99725 * 3 2 1 28 28 H 1.09000 * 109.46748 * 149.99835 * 3 2 1 29 29 H 1.09002 * 109.47143 * 59.99756 * 5 4 3 30 30 H 1.09007 * 109.46734 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.46931 * 299.99550 * 5 4 3 32 32 H 1.08994 * 109.46958 * 60.00608 * 6 4 3 33 33 H 1.09006 * 109.46671 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.47321 * 300.00283 * 6 4 3 35 35 H 1.09001 * 109.47182 * 59.99926 * 7 4 3 36 36 H 1.08997 * 109.47785 * 179.97438 * 7 4 3 37 37 H 1.09000 * 109.47178 * 300.00516 * 7 4 3 38 38 H 1.07997 * 119.95897 * 359.97438 * 11 10 8 39 39 H 1.08001 * 119.66708 * 179.74196 * 12 11 10 40 40 H 1.08005 * 119.71120 * 180.02562 * 13 12 11 41 41 H 1.08006 * 120.05650 * 180.02562 * 14 13 12 42 42 H 0.96997 * 119.99841 * 5.51885 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 14 2.5081 1.8064 -1.7565 5 6 0.8802 2.0292 -2.6347 6 6 3.4390 3.4202 -1.7564 7 6 3.5149 0.5081 -2.6347 8 6 2.1389 -1.1672 0.0005 9 8 3.3508 -1.1696 0.1008 10 6 1.4067 -2.4412 -0.1204 11 6 0.3240 -2.7104 0.7123 12 6 -0.3560 -3.9086 0.5995 13 6 0.0248 -4.8528 -0.3444 14 6 1.0874 -4.6130 -1.1850 15 6 1.7970 -3.4017 -1.0899 16 6 2.8869 -3.1467 -1.9456 17 1 3.7228 -2.5597 -1.5949 18 6 2.8860 -3.6550 -3.2529 19 7 1.7562 -3.9518 -3.8376 20 14 4.5006 -3.9077 -4.1578 21 1 4.8484 -2.6719 -4.9041 22 1 5.5743 -4.2133 -3.1785 23 1 4.3626 -5.0388 -5.1101 24 1 -0.3633 -0.1011 1.0226 25 1 -0.3633 0.9362 -0.4237 26 1 -0.3633 -0.8351 -0.5990 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1383 0.5139 29 1 0.2912 2.7889 -2.1209 30 1 1.0620 2.3443 -3.6623 31 1 0.3353 1.0852 -2.6347 32 1 4.3913 3.2903 -1.2425 33 1 3.6211 3.7346 -2.7842 34 1 2.8495 4.1797 -1.2428 35 1 2.9699 -0.4359 -2.6347 36 1 3.6963 0.8224 -3.6625 37 1 4.4673 0.3777 -2.1208 38 1 0.0180 -1.9844 1.4509 39 1 -1.1923 -4.1121 1.2518 40 1 -0.5178 -5.7837 -0.4194 41 1 1.3762 -5.3533 -1.9165 42 1 0.9152 -3.7466 -3.4002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911718519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:52 Heat of formation + Delta-G solvation = -72.197417 kcal Electronic energy + Delta-G solvation = -22004.999365 eV Core-core repulsion = 18991.919137 eV Total energy + Delta-G solvation = -3013.080228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.91318 -38.82095 -36.38265 -35.68088 -31.99914 -31.30621 -29.54579 -28.67768 -28.32423 -28.06850 -27.41489 -26.36607 -23.41306 -22.83169 -20.50344 -19.53157 -17.87183 -17.10356 -16.66433 -16.53682 -15.86271 -15.61692 -15.08652 -14.45410 -14.20753 -14.13156 -14.02459 -13.97585 -13.82832 -13.77850 -13.60085 -13.33993 -13.16706 -13.07478 -12.97983 -12.94130 -12.81471 -12.53102 -12.49827 -12.07842 -11.91586 -11.53387 -11.39827 -10.93822 -10.78221 -10.71702 -10.41026 -9.59600 -9.50763 -9.14961 -8.98075 -6.48012 0.57985 0.91067 1.39522 1.53927 1.64729 1.69597 1.96364 1.99501 2.22096 2.24327 2.49213 2.66002 2.77281 3.50498 4.04265 4.23393 4.40243 4.41977 4.56662 4.68119 4.76895 4.79461 4.80855 4.84111 4.86918 4.88425 4.90910 4.92419 4.97284 5.05045 5.16893 5.43564 5.55145 5.63773 5.64443 5.69423 5.76271 5.80040 5.91944 5.97360 6.17654 6.35158 6.56991 6.82233 6.88644 7.54557 8.02712 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.007837 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.510216 B = 3571.711542 C = 5013.213200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.600 5.600 3 C -0.190 4.190 4 Si 1.036 2.964 5 C -0.440 4.440 6 C -0.429 4.429 7 C -0.472 4.472 8 C 0.572 3.428 9 O -0.587 6.587 10 C -0.269 4.269 11 C -0.049 4.049 12 C -0.241 4.241 13 C -0.076 4.076 14 C -0.227 4.227 15 C 0.104 3.896 16 C -0.536 4.536 17 H 0.070 0.930 18 C 0.012 3.988 19 N -0.809 5.809 20 Si 1.097 2.903 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.258 1.258 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.112 0.888 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.036 0.964 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.122 0.878 41 H 0.087 0.913 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 12.881 2.923 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.332 5.332 3 C -0.357 4.357 4 Si 1.228 2.772 5 C -0.548 4.548 6 C -0.539 4.539 7 C -0.575 4.575 8 C 0.364 3.636 9 O -0.469 6.469 10 C -0.273 4.273 11 C -0.067 4.067 12 C -0.260 4.260 13 C -0.094 4.094 14 C -0.246 4.246 15 C 0.100 3.900 16 C -0.564 4.564 17 H 0.088 0.912 18 C -0.206 4.206 19 N -0.432 5.432 20 Si 0.916 3.084 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.182 1.182 24 H 0.086 0.914 25 H 0.119 0.881 26 H 0.077 0.923 27 H 0.131 0.869 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.140 0.860 41 H 0.105 0.895 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.362 12.257 1.564 12.806 hybrid contribution -0.393 -0.302 1.358 1.446 sum -3.755 11.955 2.922 12.867 Atomic orbital electron populations 1.22089 0.78277 1.04089 1.02468 1.47406 1.07586 1.04708 1.73511 1.26749 1.00332 0.88065 1.20582 0.79140 0.67475 0.65701 0.64858 1.26025 1.16048 1.04475 1.08278 1.25831 1.08166 1.14640 1.05265 1.26644 1.09360 1.13761 1.07684 1.18344 0.86334 0.84354 0.74573 1.90586 1.16174 1.87945 1.52206 1.19807 1.02872 0.95953 1.08696 1.21094 0.92330 0.97063 0.96248 1.20749 1.05039 0.95973 1.04270 1.21095 0.95144 0.98810 0.94366 1.21121 1.01954 0.97155 1.04420 1.17748 0.90875 0.89983 0.91371 1.20786 1.04868 1.31453 0.99275 0.91175 1.28079 1.05931 0.90236 0.96327 1.70465 1.00054 1.33276 1.39417 0.83266 0.70741 0.78834 0.75592 1.18948 1.19859 1.18195 0.91381 0.88050 0.92335 0.86947 0.91516 0.88657 0.90837 0.92871 0.91377 0.90343 0.88838 0.94448 0.91960 0.93639 0.85476 0.84862 0.86020 0.89472 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.01 8.79 127.77 1.12 3.13 16 2 N -0.60 -21.18 2.37 -652.93 -1.55 -22.73 16 3 C -0.19 -5.38 4.65 127.77 0.59 -4.79 16 4 Si 1.04 25.73 12.45 68.60 0.85 26.59 16 5 C -0.44 -9.72 8.09 113.37 0.92 -8.80 16 6 C -0.43 -7.81 8.65 113.37 0.98 -6.82 16 7 C -0.47 -18.04 8.62 113.37 0.98 -17.06 16 8 C 0.57 26.89 6.25 86.67 0.54 27.43 16 9 O -0.59 -31.85 14.78 -4.07 -0.06 -31.91 16 10 C -0.27 -13.17 4.90 -19.70 -0.10 -13.27 16 11 C -0.05 -1.99 7.81 22.50 0.18 -1.81 16 12 C -0.24 -9.37 10.03 22.41 0.22 -9.14 16 13 C -0.08 -3.24 10.01 22.26 0.22 -3.02 16 14 C -0.23 -11.60 8.00 22.72 0.18 -11.42 16 15 C 0.10 5.68 5.15 -21.11 -0.11 5.57 16 16 C -0.54 -30.83 7.80 23.41 0.18 -30.65 16 17 H 0.07 4.35 6.24 -2.91 -0.02 4.33 16 18 C 0.01 0.63 4.94 85.37 0.42 1.05 16 19 N -0.81 -44.27 12.57 21.88 0.28 -44.00 16 20 Si 1.10 47.79 30.00 68.60 2.06 49.85 16 21 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 24 H 0.07 1.59 7.13 -2.39 -0.02 1.57 16 25 H 0.10 2.02 7.20 -2.39 -0.02 2.00 16 26 H 0.06 1.89 6.32 -2.39 -0.02 1.87 16 27 H 0.11 2.19 7.89 -2.39 -0.02 2.17 16 28 H 0.07 2.18 7.17 -2.39 -0.02 2.17 16 29 H 0.09 1.52 7.96 -2.39 -0.02 1.50 16 30 H 0.07 1.54 7.96 -2.38 -0.02 1.52 16 31 H 0.05 1.41 7.62 -2.39 -0.02 1.39 16 32 H 0.07 1.30 7.96 -2.39 -0.02 1.28 16 33 H 0.08 1.33 7.96 -2.38 -0.02 1.31 16 34 H 0.09 1.26 7.96 -2.39 -0.02 1.24 16 35 H 0.04 1.76 7.33 -2.39 -0.02 1.74 16 36 H 0.06 2.13 7.96 -2.39 -0.02 2.11 16 37 H 0.04 1.84 7.96 -2.39 -0.02 1.82 16 38 H 0.13 4.29 6.43 -2.91 -0.02 4.27 16 39 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 40 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 41 H 0.09 4.67 6.99 -2.91 -0.02 4.65 16 42 H 0.28 15.94 6.86 -92.71 -0.64 15.31 16 Total: -1.00 -71.16 346.23 9.04 -62.12 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 1.13 Total: 29.66 kcal Atomic # 6 Polarization: -75.93 SS G_CDS: 6.34 Total: -69.59 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -1.28 Total: -66.72 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.06 Total: -31.91 kcal Atomic # 14 Polarization: 73.52 SS G_CDS: 2.91 Total: 76.44 kcal Total: -71.16 9.04 -62.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911718519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.075 kcal (2) G-P(sol) polarization free energy of solvation -71.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds