Wall clock time and date at job start Tue Mar 31 2020 06:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00022 * 2 1 4 4 Si 1.86305 * 109.46958 * 270.00353 * 3 2 1 5 5 C 1.86296 * 109.47256 * 59.99940 * 4 3 2 6 6 C 1.86301 * 109.46867 * 180.02562 * 4 3 2 7 7 C 1.86300 * 109.46998 * 299.99671 * 4 3 2 8 8 C 1.34777 * 120.00271 * 180.02562 * 2 1 3 9 9 O 1.21545 * 120.00247 * 174.43667 * 8 2 1 10 10 C 1.47893 * 119.99519 * 354.43284 * 8 2 1 11 11 C 1.39919 * 120.02118 * 147.09197 * 10 8 2 12 12 C 1.38334 * 120.35581 * 180.02562 * 11 10 8 13 13 C 1.37754 * 120.41293 * 359.97438 * 12 11 10 14 14 C 1.40757 * 120.03672 * 359.97438 * 13 12 11 15 15 C 1.41436 * 120.17281 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99650 * 150.29669 * 15 14 13 17 17 C 1.39934 * 120.00618 * 330.29698 * 15 14 13 18 18 N 1.30828 * 119.99707 * 344.37330 * 17 15 14 19 19 Si 1.86797 * 120.00335 * 164.36565 * 17 15 14 20 20 H 1.48498 * 109.46992 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47011 * 120.00395 * 19 17 15 22 22 H 1.48500 * 109.47498 * 240.00543 * 19 17 15 23 23 C 1.38993 * 120.02645 * 327.10909 * 10 8 2 24 24 H 1.09006 * 109.47136 * 268.91412 * 1 2 3 25 25 H 1.09003 * 109.47287 * 28.91301 * 1 2 3 26 26 H 1.09000 * 109.47569 * 148.91426 * 1 2 3 27 27 H 1.09005 * 109.47277 * 30.00135 * 3 2 1 28 28 H 1.08994 * 109.47566 * 150.00192 * 3 2 1 29 29 H 1.09005 * 109.47107 * 60.00139 * 5 4 3 30 30 H 1.08997 * 109.46881 * 179.97438 * 5 4 3 31 31 H 1.08994 * 109.47244 * 299.99662 * 5 4 3 32 32 H 1.09002 * 109.47451 * 59.99607 * 6 4 3 33 33 H 1.08997 * 109.47442 * 179.97438 * 6 4 3 34 34 H 1.09005 * 109.47272 * 299.99723 * 6 4 3 35 35 H 1.08994 * 109.47179 * 60.00536 * 7 4 3 36 36 H 1.09001 * 109.46744 * 179.97438 * 7 4 3 37 37 H 1.09002 * 109.47018 * 300.00209 * 7 4 3 38 38 H 1.07990 * 119.82357 * 359.97438 * 11 10 8 39 39 H 1.07999 * 119.79388 * 180.02562 * 12 11 10 40 40 H 1.07994 * 119.98058 * 180.02562 * 13 12 11 41 41 H 0.97006 * 120.00158 * 179.97438 * 18 17 15 42 42 H 1.08006 * 120.19944 * 359.70351 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 14 2.5078 1.8066 -1.7565 5 6 0.8800 2.0293 -2.6347 6 6 3.4400 3.4196 -1.7565 7 6 3.5147 0.5082 -2.6348 8 6 2.1389 -1.1672 -0.0005 9 8 3.3500 -1.1696 -0.1026 10 6 1.4046 -2.4450 0.1232 11 6 1.8805 -3.5912 -0.5229 12 6 1.1989 -4.7899 -0.4124 13 6 0.0445 -4.8693 0.3351 14 6 -0.4488 -3.7269 0.9931 15 6 -1.6335 -3.8054 1.7618 16 1 -1.7691 -3.1542 2.6127 17 6 -2.6298 -4.7266 1.4199 18 7 -2.6196 -5.2936 0.2410 19 14 -3.9741 -5.1468 2.6469 20 1 -3.7614 -4.3753 3.8978 21 1 -5.2974 -4.7985 2.0699 22 1 -3.9326 -6.6003 2.9483 23 6 0.2411 -2.5080 0.8810 24 1 -0.3634 -0.0195 1.0275 25 1 -0.3634 0.8996 -0.4969 26 1 -0.3634 -0.8801 -0.5306 27 1 1.6084 2.0284 0.5139 28 1 3.1498 1.1385 0.5138 29 1 0.2909 2.7890 -2.1208 30 1 1.0616 2.3444 -3.6621 31 1 0.3350 1.0854 -2.6347 32 1 4.3925 3.2888 -1.2428 33 1 3.6221 3.7341 -2.7841 34 1 2.8513 4.1795 -1.2425 35 1 2.9697 -0.4357 -2.6348 36 1 3.6959 0.8227 -3.6626 37 1 4.4671 0.3779 -2.1209 38 1 2.7843 -3.5397 -1.1118 39 1 1.5745 -5.6691 -0.9146 40 1 -0.4818 -5.8087 0.4170 41 1 -3.3101 -5.9325 0.0041 42 1 -0.1273 -1.6268 1.3851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911729857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:58 Heat of formation + Delta-G solvation = -48.822999 kcal Electronic energy + Delta-G solvation = -21133.093231 eV Core-core repulsion = 18121.026593 eV Total energy + Delta-G solvation = -3012.066637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.45165 -37.05236 -35.01582 -33.64342 -30.19305 -29.89390 -28.65783 -27.72127 -27.37483 -26.95690 -25.55420 -25.26226 -21.75311 -20.78767 -19.08778 -17.24278 -15.93777 -15.69843 -15.30040 -15.07290 -14.76132 -13.67695 -13.38506 -13.28234 -13.12316 -12.97102 -12.80726 -12.75953 -12.66561 -12.46166 -12.28632 -12.23223 -12.03422 -11.86732 -11.69382 -11.62088 -11.22780 -11.00022 -10.72199 -10.51276 -10.46867 -10.17708 -9.94518 -9.77402 -9.50699 -9.25457 -8.99978 -7.85250 -7.58299 -7.46199 -6.80954 -4.44909 2.26673 2.67798 2.72920 2.80262 2.86684 3.05098 3.09727 3.11419 3.60197 3.64445 3.80278 3.91057 4.59612 5.22360 5.50734 5.52518 5.54430 5.55190 5.62776 5.67282 5.70739 5.82728 5.88684 5.97118 6.08687 6.19456 6.23636 6.27529 6.41278 6.44059 6.74141 6.77488 6.89073 6.90756 7.03528 7.16896 7.36610 7.64143 7.80096 7.91254 7.98159 8.09935 8.50244 8.79532 8.80992 8.86427 10.16250 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.004040 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.509900 B = 6928.896358 C = 7473.315276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.600 5.600 3 C -0.172 4.172 4 Si 0.989 3.011 5 C -0.444 4.444 6 C -0.444 4.444 7 C -0.435 4.435 8 C 0.559 3.441 9 O -0.549 6.549 10 C -0.116 4.116 11 C -0.176 4.176 12 C -0.116 4.116 13 C -0.134 4.134 14 C 0.103 3.897 15 C -0.469 4.469 16 H 0.078 0.922 17 C 0.077 3.923 18 N -0.800 5.800 19 Si 0.906 3.094 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.273 1.273 23 C -0.192 4.192 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.280 0.720 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.262 11.854 -3.386 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.333 5.333 3 C -0.342 4.342 4 Si 1.185 2.815 5 C -0.552 4.552 6 C -0.552 4.552 7 C -0.543 4.543 8 C 0.351 3.649 9 O -0.428 6.428 10 C -0.119 4.119 11 C -0.196 4.196 12 C -0.135 4.135 13 C -0.154 4.154 14 C 0.100 3.900 15 C -0.499 4.499 16 H 0.096 0.904 17 C -0.140 4.140 18 N -0.426 5.426 19 Si 0.731 3.269 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.198 1.198 23 C -0.212 4.212 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.091 0.909 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.741 11.707 -3.548 12.792 hybrid contribution -0.843 -0.324 0.559 1.063 sum 2.898 11.382 -2.989 12.120 Atomic orbital electron populations 1.22213 0.79220 1.03367 1.02130 1.47352 1.06846 1.04901 1.74239 1.26348 1.00546 0.88813 1.18510 0.79739 0.67609 0.66711 0.67430 1.26115 1.16819 1.04725 1.07551 1.26061 1.08522 1.16434 1.04145 1.26013 1.09580 1.12344 1.06356 1.18898 0.86947 0.83876 0.75180 1.90642 1.14195 1.87441 1.50535 1.19320 0.97092 0.92038 1.03462 1.20419 1.00990 0.92466 1.05705 1.20669 0.96494 0.96091 1.00204 1.21447 0.94881 0.98935 1.00094 1.17540 0.91890 0.89900 0.90640 1.19518 1.00374 1.17711 1.12301 0.90367 1.25838 0.98939 0.94204 0.94977 1.69798 1.32183 1.22343 1.18290 0.86291 0.80039 0.79147 0.81422 1.18470 1.20039 1.19780 1.21612 0.96954 0.97910 1.04679 0.92375 0.91884 0.89141 0.90647 0.89663 0.91515 0.91553 0.90807 0.91225 0.91370 0.91431 0.91200 0.92419 0.91035 0.88407 0.88699 0.86622 0.90913 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 8.57 59.84 0.51 1.61 16 2 N -0.60 -9.85 2.38 -120.19 -0.29 -10.13 16 3 C -0.17 -2.26 4.63 59.85 0.28 -1.98 16 4 Si 0.99 10.40 12.24 -169.99 -2.08 8.32 16 5 C -0.44 -4.56 7.98 101.05 0.81 -3.75 16 6 C -0.44 -3.96 8.65 101.05 0.87 -3.09 16 7 C -0.43 -5.89 7.81 101.05 0.79 -5.10 16 8 C 0.56 11.43 6.96 -12.31 -0.09 11.34 16 9 O -0.55 -12.15 15.21 5.33 0.08 -12.06 16 10 C -0.12 -2.61 5.24 -105.04 -0.55 -3.16 16 11 C -0.18 -4.02 9.61 -38.92 -0.37 -4.39 16 12 C -0.12 -2.66 10.01 -39.72 -0.40 -3.06 16 13 C -0.13 -3.33 8.65 -38.81 -0.34 -3.67 16 14 C 0.10 2.58 5.51 -106.87 -0.59 1.99 16 15 C -0.47 -11.76 9.04 -37.73 -0.34 -12.10 16 16 H 0.08 1.89 7.89 -52.48 -0.41 1.48 16 17 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 18 N -0.80 -19.85 11.18 55.55 0.62 -19.23 16 19 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 C -0.19 -4.39 7.42 -38.45 -0.29 -4.67 16 24 H 0.06 0.86 6.63 -51.93 -0.34 0.51 16 25 H 0.06 0.73 6.89 -51.93 -0.36 0.38 16 26 H 0.09 1.54 6.11 -51.93 -0.32 1.23 16 27 H 0.07 0.80 7.89 -51.93 -0.41 0.39 16 28 H 0.08 1.22 7.33 -51.93 -0.38 0.84 16 29 H 0.07 0.60 7.96 -51.93 -0.41 0.19 16 30 H 0.07 0.63 7.96 -51.93 -0.41 0.21 16 31 H 0.07 0.85 7.49 -51.93 -0.39 0.47 16 32 H 0.07 0.62 7.96 -51.93 -0.41 0.21 16 33 H 0.07 0.57 7.96 -51.93 -0.41 0.15 16 34 H 0.07 0.54 7.96 -51.93 -0.41 0.12 16 35 H 0.07 1.12 7.61 -51.93 -0.40 0.73 16 36 H 0.06 0.67 7.96 -51.93 -0.41 0.26 16 37 H 0.07 1.03 7.96 -51.93 -0.41 0.62 16 38 H 0.10 2.15 7.96 -52.49 -0.42 1.73 16 39 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 40 H 0.12 2.96 6.47 -52.49 -0.34 2.62 16 41 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 42 H 0.11 2.29 5.11 -52.48 -0.27 2.02 16 LS Contribution 346.61 15.07 5.22 5.22 Total: -1.00 -28.48 346.61 -7.74 -36.22 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.48 Total: 6.96 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 0.21 Total: -28.26 kcal Atomic # 7 Polarization: -29.69 SS G_CDS: 0.34 Total: -29.36 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 28.39 SS G_CDS: -7.11 Total: 21.28 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.48 -7.74 -36.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911729857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.602 kcal (2) G-P(sol) polarization free energy of solvation -28.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds