Wall clock time and date at job start Tue Mar 31 2020 06:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00022 * 2 1 4 4 Si 1.86305 * 109.46958 * 270.00353 * 3 2 1 5 5 C 1.86296 * 109.47256 * 59.99940 * 4 3 2 6 6 C 1.86301 * 109.46867 * 180.02562 * 4 3 2 7 7 C 1.86300 * 109.46998 * 299.99671 * 4 3 2 8 8 C 1.34777 * 120.00271 * 180.02562 * 2 1 3 9 9 O 1.21545 * 120.00247 * 174.43667 * 8 2 1 10 10 C 1.47893 * 119.99519 * 354.43284 * 8 2 1 11 11 C 1.39919 * 120.02118 * 147.09197 * 10 8 2 12 12 C 1.38334 * 120.35581 * 180.02562 * 11 10 8 13 13 C 1.37754 * 120.41293 * 359.97438 * 12 11 10 14 14 C 1.40757 * 120.03672 * 359.97438 * 13 12 11 15 15 C 1.41436 * 120.17281 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99650 * 150.29669 * 15 14 13 17 17 C 1.39934 * 120.00618 * 330.29698 * 15 14 13 18 18 N 1.30828 * 119.99707 * 344.37330 * 17 15 14 19 19 Si 1.86797 * 120.00335 * 164.36565 * 17 15 14 20 20 H 1.48498 * 109.46992 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47011 * 120.00395 * 19 17 15 22 22 H 1.48500 * 109.47498 * 240.00543 * 19 17 15 23 23 C 1.38993 * 120.02645 * 327.10909 * 10 8 2 24 24 H 1.09006 * 109.47136 * 268.91412 * 1 2 3 25 25 H 1.09003 * 109.47287 * 28.91301 * 1 2 3 26 26 H 1.09000 * 109.47569 * 148.91426 * 1 2 3 27 27 H 1.09005 * 109.47277 * 30.00135 * 3 2 1 28 28 H 1.08994 * 109.47566 * 150.00192 * 3 2 1 29 29 H 1.09005 * 109.47107 * 60.00139 * 5 4 3 30 30 H 1.08997 * 109.46881 * 179.97438 * 5 4 3 31 31 H 1.08994 * 109.47244 * 299.99662 * 5 4 3 32 32 H 1.09002 * 109.47451 * 59.99607 * 6 4 3 33 33 H 1.08997 * 109.47442 * 179.97438 * 6 4 3 34 34 H 1.09005 * 109.47272 * 299.99723 * 6 4 3 35 35 H 1.08994 * 109.47179 * 60.00536 * 7 4 3 36 36 H 1.09001 * 109.46744 * 179.97438 * 7 4 3 37 37 H 1.09002 * 109.47018 * 300.00209 * 7 4 3 38 38 H 1.07990 * 119.82357 * 359.97438 * 11 10 8 39 39 H 1.07999 * 119.79388 * 180.02562 * 12 11 10 40 40 H 1.07994 * 119.98058 * 180.02562 * 13 12 11 41 41 H 0.97006 * 120.00158 * 179.97438 * 18 17 15 42 42 H 1.08006 * 120.19944 * 359.70351 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 14 2.5078 1.8066 -1.7565 5 6 0.8800 2.0293 -2.6347 6 6 3.4400 3.4196 -1.7565 7 6 3.5147 0.5082 -2.6348 8 6 2.1389 -1.1672 -0.0005 9 8 3.3500 -1.1696 -0.1026 10 6 1.4046 -2.4450 0.1232 11 6 1.8805 -3.5912 -0.5229 12 6 1.1989 -4.7899 -0.4124 13 6 0.0445 -4.8693 0.3351 14 6 -0.4488 -3.7269 0.9931 15 6 -1.6335 -3.8054 1.7618 16 1 -1.7691 -3.1542 2.6127 17 6 -2.6298 -4.7266 1.4199 18 7 -2.6196 -5.2936 0.2410 19 14 -3.9741 -5.1468 2.6469 20 1 -3.7614 -4.3753 3.8978 21 1 -5.2974 -4.7985 2.0699 22 1 -3.9326 -6.6003 2.9483 23 6 0.2411 -2.5080 0.8810 24 1 -0.3634 -0.0195 1.0275 25 1 -0.3634 0.8996 -0.4969 26 1 -0.3634 -0.8801 -0.5306 27 1 1.6084 2.0284 0.5139 28 1 3.1498 1.1385 0.5138 29 1 0.2909 2.7890 -2.1208 30 1 1.0616 2.3444 -3.6621 31 1 0.3350 1.0854 -2.6347 32 1 4.3925 3.2888 -1.2428 33 1 3.6221 3.7341 -2.7841 34 1 2.8513 4.1795 -1.2425 35 1 2.9697 -0.4357 -2.6348 36 1 3.6959 0.8227 -3.6626 37 1 4.4671 0.3779 -2.1209 38 1 2.7843 -3.5397 -1.1118 39 1 1.5745 -5.6691 -0.9146 40 1 -0.4818 -5.8087 0.4170 41 1 -3.3101 -5.9325 0.0041 42 1 -0.1273 -1.6268 1.3851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911729857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:58 Heat of formation + Delta-G solvation = -60.375491 kcal Electronic energy + Delta-G solvation = -21133.594184 eV Core-core repulsion = 18121.026593 eV Total energy + Delta-G solvation = -3012.567591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03397 -38.83119 -36.46826 -35.47662 -31.92027 -31.72892 -29.50382 -28.69233 -28.31443 -28.03844 -27.15515 -26.90155 -23.43494 -22.60258 -20.72515 -18.93020 -17.52123 -17.40946 -16.76046 -16.62071 -16.47091 -15.25256 -15.03331 -14.45664 -14.25965 -14.13745 -14.07290 -13.97118 -13.80447 -13.66971 -13.45308 -13.36688 -13.17474 -13.08221 -12.96166 -12.87182 -12.81502 -12.57397 -12.49792 -12.21985 -11.93044 -11.56792 -11.29722 -11.05823 -10.83980 -10.70019 -10.59209 -9.45341 -9.39754 -9.03307 -8.62138 -6.36189 0.49048 0.93823 1.42525 1.48310 1.56535 1.67302 1.95793 2.01409 2.11750 2.24510 2.39501 2.74036 2.78850 3.66588 3.80865 4.28243 4.41569 4.50616 4.54547 4.67120 4.78320 4.81100 4.87449 4.89536 4.91269 4.92801 4.95160 5.00669 5.04576 5.05625 5.17018 5.32461 5.48439 5.56637 5.65989 5.68133 5.70517 5.83664 5.98399 6.03843 6.21819 6.42697 6.61677 6.92158 6.94440 7.28880 8.37276 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.004040 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.509900 B = 6928.896358 C = 7473.315276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.589 5.589 3 C -0.201 4.201 4 Si 1.051 2.949 5 C -0.448 4.448 6 C -0.436 4.436 7 C -0.461 4.461 8 C 0.552 3.448 9 O -0.575 6.575 10 C -0.121 4.121 11 C -0.190 4.190 12 C -0.114 4.114 13 C -0.159 4.159 14 C 0.078 3.922 15 C -0.497 4.497 16 H 0.080 0.920 17 C 0.039 3.961 18 N -0.830 5.830 19 Si 0.979 3.021 20 H -0.258 1.258 21 H -0.266 1.266 22 H -0.269 1.269 23 C -0.189 4.189 24 H 0.062 0.938 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.288 0.712 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 14.542 -3.180 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.320 5.320 3 C -0.366 4.366 4 Si 1.243 2.757 5 C -0.556 4.556 6 C -0.546 4.546 7 C -0.565 4.565 8 C 0.343 3.657 9 O -0.457 6.457 10 C -0.124 4.124 11 C -0.210 4.210 12 C -0.133 4.133 13 C -0.178 4.178 14 C 0.075 3.925 15 C -0.526 4.526 16 H 0.099 0.901 17 C -0.175 4.175 18 N -0.456 5.456 19 Si 0.800 3.200 20 H -0.181 1.181 21 H -0.191 1.191 22 H -0.194 1.194 23 C -0.209 4.209 24 H 0.081 0.919 25 H 0.122 0.878 26 H 0.083 0.917 27 H 0.127 0.873 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.120 0.880 39 H 0.134 0.866 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.683 14.375 -3.341 15.000 hybrid contribution -0.449 -1.126 0.439 1.289 sum 2.233 13.249 -2.902 13.745 Atomic orbital electron populations 1.22304 0.78157 1.04270 1.02565 1.47364 1.07579 1.04950 1.72104 1.26985 1.00148 0.87570 1.21926 0.78888 0.67133 0.65905 0.63815 1.26125 1.16351 1.04631 1.08528 1.25913 1.08282 1.15078 1.05283 1.26437 1.09340 1.12593 1.08105 1.18646 0.86595 0.84512 0.75989 1.90622 1.15008 1.87882 1.52208 1.19651 0.96926 0.93296 1.02574 1.20607 1.01340 0.92876 1.06176 1.20871 0.95805 0.96999 0.99589 1.21410 0.95908 0.98586 1.01920 1.17887 0.92625 0.90725 0.91216 1.19765 1.01018 1.19063 1.12792 0.90142 1.26647 1.00946 0.93469 0.96455 1.69853 1.33261 1.22685 1.19789 0.85200 0.77119 0.78791 0.78872 1.18121 1.19115 1.19424 1.21770 0.96802 0.97849 1.04445 0.91912 0.87797 0.91653 0.87301 0.91042 0.89398 0.90438 0.92442 0.91295 0.90190 0.89478 0.94662 0.91040 0.92844 0.87993 0.86563 0.87967 0.90184 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.96 8.57 127.77 1.09 3.05 16 2 N -0.59 -18.86 2.38 -652.46 -1.55 -20.41 16 3 C -0.20 -4.86 4.63 127.77 0.59 -4.27 16 4 Si 1.05 19.65 12.24 68.60 0.84 20.49 16 5 C -0.45 -7.70 7.98 113.37 0.91 -6.79 16 6 C -0.44 -6.03 8.65 113.37 0.98 -5.05 16 7 C -0.46 -12.67 7.81 113.37 0.89 -11.78 16 8 C 0.55 22.97 6.96 86.80 0.60 23.57 16 9 O -0.58 -26.22 15.21 -3.86 -0.06 -26.28 16 10 C -0.12 -5.60 5.24 -20.13 -0.11 -5.71 16 11 C -0.19 -8.97 9.61 22.70 0.22 -8.75 16 12 C -0.11 -5.41 10.01 22.18 0.22 -5.19 16 13 C -0.16 -8.18 8.65 22.77 0.20 -7.99 16 14 C 0.08 4.02 5.51 -21.32 -0.12 3.90 16 15 C -0.50 -25.30 9.04 23.47 0.21 -25.09 16 16 H 0.08 3.92 7.89 -2.91 -0.02 3.90 16 17 C 0.04 1.90 5.14 85.25 0.44 2.34 16 18 N -0.83 -41.79 11.18 21.82 0.24 -41.54 16 19 Si 0.98 36.63 29.59 68.60 2.03 38.66 16 20 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 21 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 23 C -0.19 -8.83 7.42 23.01 0.17 -8.66 16 24 H 0.06 1.74 6.63 -2.38 -0.02 1.73 16 25 H 0.10 2.10 6.89 -2.39 -0.02 2.08 16 26 H 0.06 2.22 6.11 -2.39 -0.01 2.21 16 27 H 0.11 1.90 7.89 -2.38 -0.02 1.88 16 28 H 0.07 1.97 7.33 -2.39 -0.02 1.95 16 29 H 0.09 1.16 7.96 -2.38 -0.02 1.14 16 30 H 0.08 1.19 7.96 -2.39 -0.02 1.17 16 31 H 0.06 1.20 7.49 -2.39 -0.02 1.18 16 32 H 0.07 1.01 7.96 -2.39 -0.02 0.99 16 33 H 0.08 0.98 7.96 -2.39 -0.02 0.96 16 34 H 0.09 0.93 7.96 -2.38 -0.02 0.91 16 35 H 0.03 1.18 7.61 -2.39 -0.02 1.16 16 36 H 0.07 1.66 7.96 -2.39 -0.02 1.64 16 37 H 0.05 1.60 7.96 -2.39 -0.02 1.59 16 38 H 0.10 4.65 7.96 -2.92 -0.02 4.62 16 39 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.10 5.46 6.47 -2.91 -0.02 5.44 16 41 H 0.29 13.12 8.30 -92.70 -0.77 12.36 16 42 H 0.13 5.30 5.11 -2.91 -0.01 5.28 16 Total: -1.00 -64.02 346.61 8.80 -55.22 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 1.00 Total: 30.29 kcal Atomic # 6 Polarization: -62.72 SS G_CDS: 6.30 Total: -56.42 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -1.31 Total: -61.96 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.06 Total: -26.28 kcal Atomic # 14 Polarization: 56.28 SS G_CDS: 2.87 Total: 59.14 kcal Total: -64.02 8.80 -55.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911729857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.158 kcal (2) G-P(sol) polarization free energy of solvation -64.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds