Wall clock time and date at job start Tue Mar 31 2020 06:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99856 * 2 1 4 4 O 1.21584 * 119.99670 * 359.97438 * 3 2 1 5 5 N 1.34769 * 120.00018 * 179.97438 * 3 2 1 6 6 C 1.39431 * 119.99950 * 185.15194 * 5 3 2 7 7 C 1.39136 * 119.92755 * 33.67516 * 6 5 3 8 8 C 1.37664 * 120.07356 * 180.23502 * 7 6 5 9 9 C 1.39753 * 119.92559 * 359.46282 * 8 7 6 10 10 C 1.47578 * 120.07301 * 180.29953 * 9 8 7 11 11 O 1.21592 * 120.00235 * 328.78033 * 10 9 8 12 12 N 1.34774 * 120.00157 * 148.77952 * 10 9 8 13 13 C 1.46499 * 119.99995 * 3.65671 * 12 10 9 14 14 C 1.46500 * 120.00287 * 183.65787 * 12 10 9 15 15 C 1.50705 * 109.47023 * 90.00260 * 14 12 10 16 16 H 1.07996 * 119.99997 * 359.97438 * 15 14 12 17 17 C 1.37879 * 119.99700 * 180.02562 * 15 14 12 18 18 N 1.31518 * 119.99403 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00199 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.46744 * 90.00194 * 19 17 15 21 21 H 1.48496 * 109.47137 * 210.00106 * 19 17 15 22 22 H 1.48497 * 109.47088 * 330.00312 * 19 17 15 23 23 C 1.39753 * 119.85049 * 0.28367 * 9 8 7 24 24 C 1.37659 * 119.92821 * 359.97438 * 23 9 8 25 25 H 1.08997 * 109.47273 * 299.99764 * 1 2 3 26 26 H 1.08998 * 109.47184 * 60.00342 * 1 2 3 27 27 H 1.08996 * 109.46890 * 180.02562 * 1 2 3 28 28 H 0.96991 * 119.99992 * 179.97438 * 2 1 3 29 29 H 0.97003 * 120.00022 * 5.15620 * 5 3 2 30 30 H 1.08001 * 119.96037 * 359.97438 * 7 6 5 31 31 H 1.08006 * 120.03198 * 179.74232 * 8 7 6 32 32 H 1.09002 * 109.47083 * 94.36104 * 13 12 10 33 33 H 1.08997 * 109.47517 * 214.36579 * 13 12 10 34 34 H 1.09005 * 109.47025 * 334.36914 * 13 12 10 35 35 H 1.09003 * 109.47406 * 209.99559 * 14 12 10 36 36 H 1.08998 * 109.47203 * 329.99903 * 14 12 10 37 37 H 0.97003 * 119.99322 * 180.02562 * 18 17 15 38 38 H 1.08003 * 120.03582 * 180.02562 * 23 9 8 39 39 H 1.08001 * 119.96073 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2201 -0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.1837 2.3699 0.1090 7 6 3.6614 3.4085 0.8735 8 6 4.3447 4.5989 0.9787 9 6 5.5698 4.7596 0.3256 10 6 6.3083 6.0321 0.4416 11 8 5.7015 7.0771 0.5762 12 7 7.6553 6.0358 0.3983 13 6 8.3839 4.7881 0.1561 14 6 8.3911 7.2875 0.5936 15 6 8.6890 7.4717 2.0593 16 1 8.3626 6.7307 2.7740 17 6 9.3774 8.5868 2.4881 18 7 9.6369 8.7477 3.7673 19 14 9.9414 9.8688 1.2520 20 1 8.8806 10.8944 1.0838 21 1 11.1836 10.5173 1.7434 22 1 10.2082 9.2137 -0.0537 23 6 6.0941 3.7126 -0.4371 24 6 5.4031 2.5267 -0.5425 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.9500 -0.8400 0.0004 29 1 3.9717 0.3306 -0.0746 30 1 2.7167 3.2820 1.3815 31 1 3.9366 5.4061 1.5689 32 1 8.5994 4.6940 -0.9082 33 1 9.3186 4.7984 0.7166 34 1 7.7755 3.9435 0.4796 35 1 9.3262 7.2504 0.0347 36 1 7.7880 8.1228 0.2376 37 1 10.1209 9.5324 4.0689 38 1 7.0408 3.8334 -0.9427 39 1 5.8075 1.7173 -1.1322 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930595659.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:57 Heat of formation + Delta-G solvation = -4.325565 kcal Electronic energy + Delta-G solvation = -22465.238721 eV Core-core repulsion = 18988.354846 eV Total energy + Delta-G solvation = -3476.883875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92729 -39.67813 -37.92700 -35.13893 -34.97775 -34.85989 -32.56891 -31.00347 -30.21877 -28.20419 -26.93278 -26.11864 -23.53572 -22.97967 -21.79733 -21.10582 -19.10914 -19.01704 -17.89760 -16.92199 -16.76588 -15.99416 -15.69614 -15.46641 -14.95449 -14.69894 -14.42675 -14.20076 -13.95414 -13.61828 -13.44066 -13.20966 -12.66858 -12.63440 -12.53701 -12.33415 -12.23779 -11.77866 -11.45090 -11.01516 -10.80248 -10.58416 -10.48027 -10.30605 -10.09931 -9.58518 -9.52177 -9.07540 -8.85541 -8.56481 -8.09580 -7.67414 -6.06331 -4.05177 1.04298 1.46725 2.25590 2.76091 3.31762 3.37634 3.39046 3.39907 3.77095 3.81989 4.14974 4.42153 4.74489 4.84781 4.94881 5.05619 5.13230 5.27525 5.35663 5.38991 5.47413 5.52166 5.64686 5.78844 5.94117 6.04381 6.10211 6.17704 6.20258 6.44429 6.54109 6.58457 6.76137 6.96682 7.01308 7.35127 7.50719 7.62963 8.15535 8.24877 8.49241 8.94396 9.00213 9.53780 11.07034 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.040933 B = 0.002980 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.880071 B = 9392.585295 C = 9610.070283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.748 5.748 3 C 0.699 3.301 4 O -0.566 6.566 5 N -0.684 5.684 6 C 0.175 3.825 7 C -0.129 4.129 8 C -0.043 4.043 9 C -0.134 4.134 10 C 0.550 3.450 11 O -0.537 6.537 12 N -0.590 5.590 13 C 0.066 3.934 14 C 0.214 3.786 15 C -0.529 4.529 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.083 4.083 24 C -0.159 4.159 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.399 0.601 29 H 0.406 0.594 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.039 0.961 37 H 0.264 0.736 38 H 0.148 0.852 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.398 -23.210 -10.009 27.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.403 5.403 3 C 0.400 3.600 4 O -0.441 6.441 5 N -0.331 5.331 6 C 0.080 3.920 7 C -0.149 4.149 8 C -0.063 4.063 9 C -0.138 4.138 10 C 0.337 3.663 11 O -0.415 6.415 12 N -0.321 5.321 13 C -0.077 4.077 14 C 0.094 3.906 15 C -0.568 4.568 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.190 1.190 23 C -0.102 4.102 24 C -0.179 4.179 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.232 0.768 29 H 0.242 0.758 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.166 0.834 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.248 -21.584 -9.795 26.680 hybrid contribution 0.869 -0.258 -0.480 1.026 sum -11.379 -21.842 -10.275 26.686 Atomic orbital electron populations 1.21451 0.77605 1.02200 1.02658 1.44920 1.08050 1.06919 1.80411 1.15967 0.81424 0.84638 0.78008 1.90999 1.67385 1.29940 1.55796 1.42470 1.05030 1.08793 1.76812 1.17590 0.92296 0.86045 0.96094 1.21059 1.01294 0.93051 0.99538 1.21141 0.92114 0.96712 0.96292 1.20155 0.96623 0.95123 1.01880 1.18126 0.82286 0.88216 0.77648 1.90755 1.67842 1.33094 1.49843 1.47712 1.05082 1.10098 1.69220 1.22296 0.98468 0.87291 0.99691 1.19704 0.91162 0.81846 0.97894 1.21337 1.36162 1.08128 0.91157 0.90703 1.24862 0.95446 0.97554 0.95181 1.69904 1.40873 1.28863 1.13954 0.86838 0.78533 0.82420 0.81830 1.19851 1.21084 1.19041 1.21735 0.99515 0.91624 0.97340 1.20713 0.95865 0.99095 1.02268 0.92054 0.92115 0.90453 0.76824 0.75839 0.84450 0.84594 0.93213 0.90776 0.90264 0.95063 0.94284 0.92567 0.83432 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.57 10.70 59.85 0.64 1.21 16 2 N -0.75 -4.67 5.72 -72.07 -0.41 -5.08 16 3 C 0.70 7.37 8.29 -86.92 -0.72 6.65 16 4 O -0.57 -8.61 14.02 5.29 0.07 -8.54 16 5 N -0.68 -6.06 5.32 -14.22 -0.08 -6.13 16 6 C 0.17 2.12 6.27 -83.74 -0.53 1.60 16 7 C -0.13 -1.90 8.62 -39.46 -0.34 -2.24 16 8 C -0.04 -0.72 9.59 -39.23 -0.38 -1.10 16 9 C -0.13 -2.33 5.48 -104.96 -0.58 -2.91 16 10 C 0.55 12.11 7.44 -12.45 -0.09 12.02 16 11 O -0.54 -14.08 16.29 5.29 0.09 -13.99 16 12 N -0.59 -12.64 2.86 -184.17 -0.53 -13.17 16 13 C 0.07 1.02 8.79 59.85 0.53 1.55 16 14 C 0.21 5.37 4.28 -5.19 -0.02 5.35 16 15 C -0.53 -15.49 9.94 -34.44 -0.34 -15.83 16 16 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 18 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 19 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 20 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 23 C -0.08 -1.11 7.43 -39.23 -0.29 -1.40 16 24 C -0.16 -1.74 9.94 -39.46 -0.39 -2.13 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.40 1.07 8.85 -40.82 -0.36 0.71 16 29 H 0.41 1.94 8.83 -40.82 -0.36 1.58 16 30 H 0.14 2.07 6.41 -52.49 -0.34 1.74 16 31 H 0.14 2.37 7.94 -52.48 -0.42 1.96 16 32 H 0.05 0.62 7.40 -51.93 -0.38 0.24 16 33 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.08 1.07 4.75 -51.93 -0.25 0.82 16 35 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 36 H 0.04 1.05 6.80 -51.93 -0.35 0.69 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.15 1.69 4.73 -52.48 -0.25 1.44 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -39.00 328.43 -7.19 -46.19 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.78 Total: 1.01 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -2.61 Total: 4.80 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.24 Total: -51.60 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.16 Total: -22.53 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -39.00 -7.19 -46.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930595659.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.863 kcal (2) G-P(sol) polarization free energy of solvation -39.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds