Wall clock time and date at job start Tue Mar 31 2020 06:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99856 * 2 1 4 4 O 1.21584 * 119.99670 * 359.97438 * 3 2 1 5 5 N 1.34769 * 120.00018 * 179.97438 * 3 2 1 6 6 C 1.39431 * 119.99950 * 185.15194 * 5 3 2 7 7 C 1.39136 * 119.92755 * 33.67516 * 6 5 3 8 8 C 1.37664 * 120.07356 * 180.23502 * 7 6 5 9 9 C 1.39753 * 119.92559 * 359.46282 * 8 7 6 10 10 C 1.47578 * 120.07301 * 180.29953 * 9 8 7 11 11 O 1.21592 * 120.00235 * 328.78033 * 10 9 8 12 12 N 1.34774 * 120.00157 * 148.77952 * 10 9 8 13 13 C 1.46499 * 119.99995 * 3.65671 * 12 10 9 14 14 C 1.46500 * 120.00287 * 183.65787 * 12 10 9 15 15 C 1.50705 * 109.47023 * 90.00260 * 14 12 10 16 16 H 1.07996 * 119.99997 * 359.97438 * 15 14 12 17 17 C 1.37879 * 119.99700 * 180.02562 * 15 14 12 18 18 N 1.31518 * 119.99403 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00199 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.46744 * 90.00194 * 19 17 15 21 21 H 1.48496 * 109.47137 * 210.00106 * 19 17 15 22 22 H 1.48497 * 109.47088 * 330.00312 * 19 17 15 23 23 C 1.39753 * 119.85049 * 0.28367 * 9 8 7 24 24 C 1.37659 * 119.92821 * 359.97438 * 23 9 8 25 25 H 1.08997 * 109.47273 * 299.99764 * 1 2 3 26 26 H 1.08998 * 109.47184 * 60.00342 * 1 2 3 27 27 H 1.08996 * 109.46890 * 180.02562 * 1 2 3 28 28 H 0.96991 * 119.99992 * 179.97438 * 2 1 3 29 29 H 0.97003 * 120.00022 * 5.15620 * 5 3 2 30 30 H 1.08001 * 119.96037 * 359.97438 * 7 6 5 31 31 H 1.08006 * 120.03198 * 179.74232 * 8 7 6 32 32 H 1.09002 * 109.47083 * 94.36104 * 13 12 10 33 33 H 1.08997 * 109.47517 * 214.36579 * 13 12 10 34 34 H 1.09005 * 109.47025 * 334.36914 * 13 12 10 35 35 H 1.09003 * 109.47406 * 209.99559 * 14 12 10 36 36 H 1.08998 * 109.47203 * 329.99903 * 14 12 10 37 37 H 0.97003 * 119.99322 * 180.02562 * 18 17 15 38 38 H 1.08003 * 120.03582 * 180.02562 * 23 9 8 39 39 H 1.08001 * 119.96073 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2201 -0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.1837 2.3699 0.1090 7 6 3.6614 3.4085 0.8735 8 6 4.3447 4.5989 0.9787 9 6 5.5698 4.7596 0.3256 10 6 6.3083 6.0321 0.4416 11 8 5.7015 7.0771 0.5762 12 7 7.6553 6.0358 0.3983 13 6 8.3839 4.7881 0.1561 14 6 8.3911 7.2875 0.5936 15 6 8.6890 7.4717 2.0593 16 1 8.3626 6.7307 2.7740 17 6 9.3774 8.5868 2.4881 18 7 9.6369 8.7477 3.7673 19 14 9.9414 9.8688 1.2520 20 1 8.8806 10.8944 1.0838 21 1 11.1836 10.5173 1.7434 22 1 10.2082 9.2137 -0.0537 23 6 6.0941 3.7126 -0.4371 24 6 5.4031 2.5267 -0.5425 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.9500 -0.8400 0.0004 29 1 3.9717 0.3306 -0.0746 30 1 2.7167 3.2820 1.3815 31 1 3.9366 5.4061 1.5689 32 1 8.5994 4.6940 -0.9082 33 1 9.3186 4.7984 0.7166 34 1 7.7755 3.9435 0.4796 35 1 9.3262 7.2504 0.0347 36 1 7.7880 8.1228 0.2376 37 1 10.1209 9.5324 4.0689 38 1 7.0408 3.8334 -0.9427 39 1 5.8075 1.7173 -1.1322 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930595659.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:56 Heat of formation + Delta-G solvation = -35.831664 kcal Electronic energy + Delta-G solvation = -22466.604928 eV Core-core repulsion = 18988.354846 eV Total energy + Delta-G solvation = -3478.250082 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.87707 -41.03313 -39.18246 -36.79018 -35.96596 -35.71301 -34.70637 -32.23385 -31.49613 -29.86841 -27.86892 -27.36705 -25.12239 -24.06669 -23.28867 -21.97593 -20.65219 -19.79556 -19.15110 -18.82221 -18.20753 -17.37199 -16.81235 -16.47010 -16.29045 -15.97483 -15.70709 -15.55373 -15.13877 -14.96059 -14.53769 -14.45593 -14.18300 -13.96136 -13.66634 -13.63074 -13.53017 -13.06750 -13.01371 -12.75969 -12.45697 -12.05847 -11.97065 -11.75912 -11.61542 -11.28033 -10.84397 -10.78716 -10.22598 -9.94780 -9.47217 -9.08325 -8.34813 -6.40541 -0.13560 0.38606 1.32714 1.37962 1.46129 1.52346 1.75218 2.04857 2.30553 2.31871 2.86047 2.99483 3.19642 3.65359 3.85139 3.95366 4.26777 4.37331 4.40000 4.48849 4.52559 4.62505 4.65754 4.76274 4.89693 4.96748 4.97753 5.01458 5.12907 5.18426 5.33570 5.37645 5.43693 5.46937 5.59475 5.89422 5.94917 6.22653 6.60521 6.62951 6.94649 7.18439 7.34300 7.42223 8.82305 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.040933 B = 0.002980 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.880071 B = 9392.585295 C = 9610.070283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.727 5.727 3 C 0.691 3.309 4 O -0.618 6.618 5 N -0.666 5.666 6 C 0.188 3.812 7 C -0.140 4.140 8 C -0.063 4.063 9 C -0.162 4.162 10 C 0.540 3.460 11 O -0.600 6.600 12 N -0.597 5.597 13 C 0.057 3.943 14 C 0.221 3.779 15 C -0.539 4.539 16 H 0.026 0.974 17 C 0.010 3.990 18 N -0.945 5.945 19 Si 0.951 3.049 20 H -0.279 1.279 21 H -0.273 1.273 22 H -0.234 1.234 23 C -0.071 4.071 24 C -0.136 4.136 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.118 0.882 28 H 0.420 0.580 29 H 0.431 0.569 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.019 0.981 37 H 0.269 0.731 38 H 0.176 0.824 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.247 -26.803 -13.160 31.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.383 5.383 3 C 0.392 3.608 4 O -0.498 6.498 5 N -0.315 5.315 6 C 0.091 3.909 7 C -0.161 4.161 8 C -0.083 4.083 9 C -0.166 4.166 10 C 0.330 3.670 11 O -0.482 6.482 12 N -0.327 5.327 13 C -0.084 4.084 14 C 0.099 3.901 15 C -0.578 4.578 16 H 0.044 0.956 17 C -0.188 4.188 18 N -0.585 5.585 19 Si 0.773 3.227 20 H -0.204 1.204 21 H -0.198 1.198 22 H -0.157 1.157 23 C -0.089 4.089 24 C -0.156 4.156 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.137 0.863 28 H 0.257 0.743 29 H 0.271 0.729 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.193 0.807 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.063 -25.332 -12.964 30.531 hybrid contribution 0.380 0.659 0.576 0.954 sum -10.683 -24.673 -12.388 29.603 Atomic orbital electron populations 1.21604 0.76934 1.04462 1.01338 1.44805 1.08429 1.06530 1.78518 1.16276 0.81793 0.85001 0.77764 1.90984 1.68499 1.32213 1.58080 1.42265 1.04596 1.08765 1.75906 1.17711 0.92644 0.86219 0.94331 1.20956 1.00946 0.93392 1.00779 1.20969 0.92877 0.97155 0.97321 1.19852 0.96938 0.94546 1.05249 1.18929 0.82538 0.89249 0.76287 1.90697 1.69116 1.35662 1.52749 1.47813 1.05232 1.10927 1.68694 1.22707 0.97847 0.85319 1.02541 1.19412 0.92145 0.83479 0.95035 1.21554 1.36012 1.07349 0.92851 0.95554 1.25894 0.95462 1.00036 0.97429 1.70059 1.42047 1.30003 1.16435 0.85678 0.77987 0.78849 0.80205 1.20445 1.19759 1.15679 1.21993 1.00334 0.90840 0.95739 1.21171 0.94301 0.99311 1.00790 0.93566 0.93365 0.86345 0.74298 0.72894 0.85594 0.87532 0.88679 0.91474 0.87965 0.92278 0.96316 0.92201 0.80716 0.79985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 10.70 127.77 1.37 2.25 16 2 N -0.73 -6.96 5.72 -500.20 -2.86 -9.82 16 3 C 0.69 13.17 8.29 179.06 1.48 14.65 16 4 O -0.62 -18.78 14.02 -3.98 -0.06 -18.84 16 5 N -0.67 -9.43 5.32 -317.18 -1.69 -11.12 16 6 C 0.19 4.05 6.27 38.36 0.24 4.29 16 7 C -0.14 -4.20 8.62 22.35 0.19 -4.01 16 8 C -0.06 -2.28 9.59 22.50 0.22 -2.06 16 9 C -0.16 -5.71 5.48 -20.08 -0.11 -5.82 16 10 C 0.54 24.72 7.44 86.71 0.64 25.37 16 11 O -0.60 -33.71 16.29 -4.00 -0.07 -33.78 16 12 N -0.60 -25.62 2.86 -854.86 -2.44 -28.06 16 13 C 0.06 1.62 8.79 127.77 1.12 2.74 16 14 C 0.22 11.18 4.28 85.63 0.37 11.54 16 15 C -0.54 -32.79 9.94 25.60 0.25 -32.53 16 16 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 17 C 0.01 0.59 5.47 84.65 0.46 1.05 16 18 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 19 Si 0.95 45.34 27.47 68.60 1.88 47.22 16 20 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.23 -9.88 6.54 99.48 0.65 -9.23 16 23 C -0.07 -1.64 7.43 22.50 0.17 -1.47 16 24 C -0.14 -2.30 9.94 22.35 0.22 -2.08 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.42 0.49 8.85 -92.71 -0.82 -0.34 16 29 H 0.43 1.86 8.83 -92.71 -0.82 1.04 16 30 H 0.13 4.03 6.41 -2.91 -0.02 4.01 16 31 H 0.11 4.28 7.94 -2.91 -0.02 4.25 16 32 H 0.10 1.89 7.40 -2.39 -0.02 1.87 16 33 H 0.07 2.02 8.10 -2.39 -0.02 2.00 16 34 H 0.10 2.43 4.75 -2.38 -0.01 2.42 16 35 H 0.06 2.65 7.13 -2.39 -0.02 2.63 16 36 H 0.02 1.02 6.80 -2.39 -0.02 1.01 16 37 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 38 H 0.18 3.08 4.73 -2.91 -0.01 3.07 16 39 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -94.61 328.43 1.12 -93.49 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -0.59 Total: 7.75 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 6.63 Total: 13.92 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -6.69 Total: -109.77 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -0.12 Total: -52.61 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.22 kcal Total: -94.61 1.12 -93.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930595659.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.662 kcal (2) G-P(sol) polarization free energy of solvation -94.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds