Wall clock time and date at job start Tue Mar 31 2020 06:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99706 * 2 1 4 4 C 1.52998 * 109.47444 * 270.00250 * 3 2 1 5 5 C 1.52999 * 109.47192 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46964 * 180.02562 * 5 4 3 7 7 O 1.21299 * 120.00090 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99923 * 180.02562 * 6 5 4 9 9 C 1.37096 * 119.99972 * 180.02562 * 8 6 5 10 10 H 1.07994 * 120.00285 * 359.97438 * 9 8 6 11 11 C 1.38955 * 120.00073 * 179.97438 * 9 8 6 12 12 N 1.31415 * 119.99626 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00122 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47150 * 90.00035 * 13 11 9 15 15 H 1.48496 * 109.47341 * 210.00062 * 13 11 9 16 16 H 1.48503 * 109.47229 * 330.00493 * 13 11 9 17 17 C 1.34772 * 119.99984 * 180.02562 * 2 1 3 18 18 O 1.21521 * 119.99806 * 184.78578 * 17 2 1 19 19 C 1.48147 * 120.00331 * 4.77718 * 17 2 1 20 20 C 1.39813 * 120.92374 * 142.18216 * 19 17 2 21 21 C 1.38146 * 119.00535 * 179.97438 * 20 19 17 22 22 N 1.31813 * 120.89487 * 359.97438 * 21 20 19 23 23 C 1.31817 * 122.04883 * 0.02562 * 22 21 20 24 24 C 1.38148 * 120.89507 * 359.97438 * 23 22 21 25 25 H 1.09008 * 109.47260 * 264.79095 * 1 2 3 26 26 H 1.09003 * 109.47485 * 24.79065 * 1 2 3 27 27 H 1.08998 * 109.47507 * 144.79226 * 1 2 3 28 28 H 1.08993 * 109.47008 * 30.00806 * 3 2 1 29 29 H 1.09003 * 109.46853 * 150.00268 * 3 2 1 30 30 H 1.09003 * 109.47326 * 300.00302 * 4 3 2 31 31 H 1.08999 * 109.47188 * 59.99662 * 4 3 2 32 32 H 1.08990 * 109.47121 * 299.99861 * 5 4 3 33 33 H 1.08995 * 109.46837 * 59.99890 * 5 4 3 34 34 H 0.96996 * 120.00053 * 359.97438 * 8 6 5 35 35 H 0.97002 * 119.99764 * 179.97438 * 12 11 9 36 36 H 1.08005 * 120.49654 * 359.71102 * 20 19 17 37 37 H 1.07995 * 119.55293 * 180.02562 * 21 20 19 38 38 H 1.07993 * 119.55211 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.49778 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7106 -1.4425 5 6 3.2179 3.0353 -1.4424 6 6 3.4684 3.4707 -2.8632 7 8 3.0740 2.7883 -3.7852 8 7 4.1317 4.6179 -3.1094 9 6 4.3592 5.0142 -4.4020 10 1 4.0073 4.4071 -5.2229 11 6 5.0426 6.1972 -4.6559 12 7 5.4712 6.9357 -3.6569 13 14 5.3531 6.7369 -6.4169 14 1 4.2232 7.5805 -6.8828 15 1 6.6137 7.5193 -6.4799 16 1 5.4693 5.5400 -7.2883 17 6 2.1388 -1.1672 -0.0005 18 8 3.3509 -1.1690 0.0873 19 6 1.4020 -2.4479 -0.1079 20 6 1.9169 -3.5126 -0.8536 21 6 1.1968 -4.6894 -0.9266 22 7 0.0412 -4.8153 -0.3052 23 6 -0.4798 -3.8368 0.4080 24 6 0.1730 -2.6258 0.5345 25 1 -0.3634 -0.0933 1.0235 26 1 -0.3634 0.9330 -0.4309 27 1 -0.3634 -0.8396 -0.5925 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1385 0.5138 30 1 3.0415 0.9510 -1.9564 31 1 1.5000 1.8409 -1.9563 32 1 2.6292 3.7951 -0.9284 33 1 4.1703 2.9045 -0.9287 34 1 4.4475 5.1634 -2.3722 35 1 5.9486 7.7613 -3.8341 36 1 2.8613 -3.4152 -1.3685 37 1 1.5864 -5.5176 -1.4998 38 1 -1.4298 -3.9837 0.9001 39 1 -0.2599 -1.8283 1.1201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931298532.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:42 Heat of formation + Delta-G solvation = -33.921004 kcal Electronic energy + Delta-G solvation = -22030.199289 eV Core-core repulsion = 18552.032060 eV Total energy + Delta-G solvation = -3478.167229 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.01468 -39.39333 -38.22592 -36.17445 -34.15062 -33.54879 -32.28802 -31.58084 -31.16593 -27.91737 -26.97134 -25.11204 -23.98156 -23.75515 -21.84561 -20.04592 -19.08122 -17.93923 -17.81918 -17.06564 -16.38367 -16.24815 -15.71982 -15.52794 -15.23341 -14.87644 -14.47785 -14.15840 -14.06577 -13.91671 -13.61526 -13.34357 -13.13992 -12.65441 -12.57066 -12.04402 -11.89698 -11.56145 -11.45311 -11.21766 -11.05771 -10.50115 -10.40449 -10.39362 -10.21492 -10.17665 -9.71633 -9.53983 -9.51688 -8.90138 -8.39000 -7.97056 -6.41894 -3.82710 0.47890 0.72315 2.46440 2.73069 3.17441 3.26054 3.32334 3.46221 3.92186 4.00402 4.06873 4.17829 4.42376 4.56540 4.69072 4.79377 4.87970 5.02856 5.05206 5.17609 5.25884 5.35387 5.39625 5.42610 5.46300 5.54495 5.66522 5.71445 5.83772 6.01522 6.17861 6.24446 6.45126 6.50462 6.66704 7.06855 7.54160 7.55024 7.85826 8.05989 8.60873 9.17512 9.55008 10.06409 10.75834 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033167 B = 0.002566 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.021176 B =10911.180350 C =11225.398172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.605 5.605 3 C 0.112 3.888 4 C -0.111 4.111 5 C -0.128 4.128 6 C 0.440 3.560 7 O -0.598 6.598 8 N -0.563 5.563 9 C -0.301 4.301 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.901 5.901 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.270 1.270 17 C 0.556 3.444 18 O -0.522 6.522 19 C -0.079 4.079 20 C -0.119 4.119 21 C 0.098 3.902 22 N -0.474 5.474 23 C 0.094 3.906 24 C -0.152 4.152 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.393 0.607 35 H 0.272 0.728 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.880 -15.788 12.079 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.338 5.338 3 C -0.010 4.010 4 C -0.150 4.150 5 C -0.169 4.169 6 C 0.226 3.774 7 O -0.484 6.484 8 N -0.199 5.199 9 C -0.431 4.431 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.343 3.657 18 O -0.398 6.398 19 C -0.091 4.091 20 C -0.140 4.140 21 C -0.059 4.059 22 N -0.183 5.183 23 C -0.063 4.063 24 C -0.172 4.172 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.226 0.774 35 H 0.081 0.919 36 H 0.163 0.837 37 H 0.181 0.819 38 H 0.179 0.821 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.826 -16.808 11.445 23.523 hybrid contribution 0.782 1.631 -0.359 1.844 sum -11.044 -15.177 11.086 21.799 Atomic orbital electron populations 1.22203 0.79471 1.04229 1.01476 1.47740 1.07180 1.06098 1.72746 1.21718 0.97723 0.83160 0.98376 1.21575 1.01420 0.97148 0.94867 1.21390 1.01246 0.97358 0.96907 1.19928 0.83936 0.83405 0.90110 1.90513 1.56116 1.55549 1.46219 1.41916 1.49212 1.19873 1.08863 1.19719 1.33533 1.05363 0.84449 0.87992 1.25273 0.96892 0.96158 0.99647 1.69616 1.38606 1.14820 1.31230 0.85860 0.77708 0.78755 0.81981 1.20401 1.20886 1.19421 1.18282 0.87054 0.83385 0.76985 1.90822 1.13286 1.86964 1.48692 1.20370 0.95129 0.94956 0.98602 1.22317 1.01117 0.92778 0.97794 1.22809 0.90270 0.96611 0.96209 1.67561 1.11985 1.32159 1.06638 1.22775 0.99667 0.88431 0.95426 1.22715 0.94437 0.99921 1.00110 0.92047 0.90108 0.90651 0.90100 0.89435 0.91085 0.91316 0.90411 0.90251 0.77363 0.91860 0.83653 0.81935 0.82135 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 8.87 59.84 0.53 1.03 16 2 N -0.61 -6.80 2.87 -182.58 -0.52 -7.33 16 3 C 0.11 1.35 5.42 -4.04 -0.02 1.33 16 4 C -0.11 -1.76 4.83 -26.73 -0.13 -1.89 16 5 C -0.13 -2.20 5.70 -27.88 -0.16 -2.36 16 6 C 0.44 10.52 7.78 -10.99 -0.09 10.44 16 7 O -0.60 -16.52 15.56 5.54 0.09 -16.43 16 8 N -0.56 -14.51 5.29 -10.96 -0.06 -14.56 16 9 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 10 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 11 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 12 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 13 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 C 0.56 7.34 7.41 -12.19 -0.09 7.25 16 18 O -0.52 -8.86 16.48 5.35 0.09 -8.78 16 19 C -0.08 -0.85 5.29 -104.65 -0.55 -1.40 16 20 C -0.12 -1.21 9.75 -39.03 -0.38 -1.59 16 21 C 0.10 0.87 11.17 -17.59 -0.20 0.67 16 22 N -0.47 -4.56 10.34 -13.31 -0.14 -4.69 16 23 C 0.09 0.72 11.17 -17.59 -0.20 0.52 16 24 C -0.15 -1.18 7.68 -39.02 -0.30 -1.48 16 25 H 0.06 0.30 6.89 -51.92 -0.36 -0.06 16 26 H 0.08 0.55 8.03 -51.93 -0.42 0.13 16 27 H 0.07 0.52 5.83 -51.93 -0.30 0.22 16 28 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 29 H 0.09 1.15 7.36 -51.93 -0.38 0.76 16 30 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 31 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.15 0.78 5.27 -52.49 -0.28 0.50 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -35.53 336.21 -6.54 -42.07 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -4.94 Total: 8.10 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.82 Total: 4.35 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.00 Total: -50.60 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: 0.17 Total: -25.20 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.53 -6.54 -42.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298532.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.150 kcal (2) G-P(sol) polarization free energy of solvation -35.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds