Wall clock time and date at job start Tue Mar 31 2020 06:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99706 * 2 1 4 4 C 1.52998 * 109.47444 * 270.00250 * 3 2 1 5 5 C 1.52999 * 109.47192 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46964 * 180.02562 * 5 4 3 7 7 O 1.21299 * 120.00090 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99923 * 180.02562 * 6 5 4 9 9 C 1.37096 * 119.99972 * 180.02562 * 8 6 5 10 10 H 1.07994 * 120.00285 * 359.97438 * 9 8 6 11 11 C 1.38955 * 120.00073 * 179.97438 * 9 8 6 12 12 N 1.31415 * 119.99626 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00122 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47150 * 90.00035 * 13 11 9 15 15 H 1.48496 * 109.47341 * 210.00062 * 13 11 9 16 16 H 1.48503 * 109.47229 * 330.00493 * 13 11 9 17 17 C 1.34772 * 119.99984 * 180.02562 * 2 1 3 18 18 O 1.21521 * 119.99806 * 184.78578 * 17 2 1 19 19 C 1.48147 * 120.00331 * 4.77718 * 17 2 1 20 20 C 1.39813 * 120.92374 * 142.18216 * 19 17 2 21 21 C 1.38146 * 119.00535 * 179.97438 * 20 19 17 22 22 N 1.31813 * 120.89487 * 359.97438 * 21 20 19 23 23 C 1.31817 * 122.04883 * 0.02562 * 22 21 20 24 24 C 1.38148 * 120.89507 * 359.97438 * 23 22 21 25 25 H 1.09008 * 109.47260 * 264.79095 * 1 2 3 26 26 H 1.09003 * 109.47485 * 24.79065 * 1 2 3 27 27 H 1.08998 * 109.47507 * 144.79226 * 1 2 3 28 28 H 1.08993 * 109.47008 * 30.00806 * 3 2 1 29 29 H 1.09003 * 109.46853 * 150.00268 * 3 2 1 30 30 H 1.09003 * 109.47326 * 300.00302 * 4 3 2 31 31 H 1.08999 * 109.47188 * 59.99662 * 4 3 2 32 32 H 1.08990 * 109.47121 * 299.99861 * 5 4 3 33 33 H 1.08995 * 109.46837 * 59.99890 * 5 4 3 34 34 H 0.96996 * 120.00053 * 359.97438 * 8 6 5 35 35 H 0.97002 * 119.99764 * 179.97438 * 12 11 9 36 36 H 1.08005 * 120.49654 * 359.71102 * 20 19 17 37 37 H 1.07995 * 119.55293 * 180.02562 * 21 20 19 38 38 H 1.07993 * 119.55211 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.49778 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7106 -1.4425 5 6 3.2179 3.0353 -1.4424 6 6 3.4684 3.4707 -2.8632 7 8 3.0740 2.7883 -3.7852 8 7 4.1317 4.6179 -3.1094 9 6 4.3592 5.0142 -4.4020 10 1 4.0073 4.4071 -5.2229 11 6 5.0426 6.1972 -4.6559 12 7 5.4712 6.9357 -3.6569 13 14 5.3531 6.7369 -6.4169 14 1 4.2232 7.5805 -6.8828 15 1 6.6137 7.5193 -6.4799 16 1 5.4693 5.5400 -7.2883 17 6 2.1388 -1.1672 -0.0005 18 8 3.3509 -1.1690 0.0873 19 6 1.4020 -2.4479 -0.1079 20 6 1.9169 -3.5126 -0.8536 21 6 1.1968 -4.6894 -0.9266 22 7 0.0412 -4.8153 -0.3052 23 6 -0.4798 -3.8368 0.4080 24 6 0.1730 -2.6258 0.5345 25 1 -0.3634 -0.0933 1.0235 26 1 -0.3634 0.9330 -0.4309 27 1 -0.3634 -0.8396 -0.5925 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1385 0.5138 30 1 3.0415 0.9510 -1.9564 31 1 1.5000 1.8409 -1.9563 32 1 2.6292 3.7951 -0.9284 33 1 4.1703 2.9045 -0.9287 34 1 4.4475 5.1634 -2.3722 35 1 5.9486 7.7613 -3.8341 36 1 2.8613 -3.4152 -1.3685 37 1 1.5864 -5.5176 -1.4998 38 1 -1.4298 -3.9837 0.9001 39 1 -0.2599 -1.8283 1.1201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298532.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:42 Heat of formation + Delta-G solvation = -59.534740 kcal Electronic energy + Delta-G solvation = -22031.309984 eV Core-core repulsion = 18552.032060 eV Total energy + Delta-G solvation = -3479.277924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.81278 -40.36147 -40.02244 -37.22592 -36.07540 -34.71620 -33.41997 -33.10745 -32.25374 -29.05879 -27.87311 -26.78311 -25.07218 -24.43710 -23.07307 -20.96685 -20.89849 -19.88668 -18.73757 -18.01314 -17.65478 -17.12312 -16.84907 -16.61602 -16.43487 -16.32111 -15.88584 -15.77907 -14.86219 -14.79187 -14.68203 -14.59910 -14.29098 -14.08046 -13.64158 -13.31930 -13.08023 -12.98891 -12.70032 -12.63005 -12.49337 -12.43650 -12.13644 -11.69703 -11.54646 -11.46890 -10.93299 -10.47547 -10.40529 -10.16993 -10.05022 -9.79862 -8.49777 -5.99036 -0.27118 0.08438 1.35658 1.39416 1.51608 1.53400 1.88747 2.02563 2.28326 2.78164 3.17154 3.18375 3.28187 3.51227 3.82382 3.91616 3.99618 4.02540 4.06457 4.13816 4.25941 4.47843 4.48595 4.54529 4.63615 4.73464 4.77638 4.80125 4.81436 4.89000 5.01773 5.13558 5.25890 5.37933 5.45874 5.60675 5.97051 6.19015 6.55941 6.89648 6.91337 7.08849 7.52939 8.08574 8.67571 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033167 B = 0.002566 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.021176 B =10911.180350 C =11225.398172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.603 5.603 3 C 0.119 3.881 4 C -0.101 4.101 5 C -0.116 4.116 6 C 0.433 3.567 7 O -0.641 6.641 8 N -0.572 5.572 9 C -0.339 4.339 10 H 0.076 0.924 11 C -0.012 4.012 12 N -0.919 5.919 13 Si 0.993 3.007 14 H -0.268 1.268 15 H -0.269 1.269 16 H -0.275 1.275 17 C 0.548 3.452 18 O -0.575 6.575 19 C -0.099 4.099 20 C -0.139 4.139 21 C 0.096 3.904 22 N -0.492 5.492 23 C 0.096 3.904 24 C -0.138 4.138 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.398 0.602 35 H 0.279 0.721 36 H 0.134 0.866 37 H 0.183 0.817 38 H 0.197 0.803 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.826 -15.360 13.540 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.334 5.334 3 C -0.003 4.003 4 C -0.140 4.140 5 C -0.156 4.156 6 C 0.222 3.778 7 O -0.530 6.530 8 N -0.208 5.208 9 C -0.468 4.468 10 H 0.094 0.906 11 C -0.212 4.212 12 N -0.559 5.559 13 Si 0.817 3.183 14 H -0.193 1.193 15 H -0.194 1.194 16 H -0.200 1.200 17 C 0.337 3.663 18 O -0.454 6.454 19 C -0.111 4.111 20 C -0.159 4.159 21 C -0.060 4.060 22 N -0.202 5.202 23 C -0.060 4.060 24 C -0.157 4.157 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.140 0.860 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.114 0.886 34 H 0.232 0.768 35 H 0.088 0.912 36 H 0.152 0.848 37 H 0.200 0.800 38 H 0.214 0.786 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.806 -16.365 12.933 25.013 hybrid contribution 1.324 1.477 -0.798 2.137 sum -12.482 -14.888 12.135 22.907 Atomic orbital electron populations 1.22540 0.76733 1.04991 1.03911 1.47869 1.08905 1.05165 1.71442 1.21614 0.98519 0.84593 0.95567 1.21460 1.00023 0.95296 0.97212 1.21380 1.03034 0.98825 0.92384 1.21127 0.82037 0.82109 0.92557 1.90481 1.57415 1.56533 1.48547 1.41999 1.49893 1.20706 1.08248 1.19675 1.35647 1.06353 0.85137 0.90567 1.26064 0.95888 0.95534 1.03754 1.69670 1.38346 1.15051 1.32860 0.84930 0.78282 0.78156 0.76978 1.19317 1.19377 1.19993 1.18763 0.86671 0.84715 0.76144 1.90782 1.15552 1.87810 1.51298 1.20354 0.96538 0.93928 1.00240 1.22364 1.01260 0.93643 0.98669 1.23077 0.90100 0.96612 0.96209 1.67635 1.12146 1.33151 1.07271 1.23402 1.00556 0.87685 0.94384 1.22986 0.92849 1.00828 0.99065 0.88498 0.89204 0.90293 0.86026 0.90532 0.95159 0.91898 0.86608 0.88611 0.76772 0.91182 0.84799 0.79987 0.78589 0.80464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 8.87 127.77 1.13 1.80 16 2 N -0.60 -12.67 2.87 -849.84 -2.44 -15.11 16 3 C 0.12 2.68 5.42 86.38 0.47 3.15 16 4 C -0.10 -3.16 4.83 30.59 0.15 -3.02 16 5 C -0.12 -3.87 5.70 29.85 0.17 -3.70 16 6 C 0.43 21.10 7.78 87.66 0.68 21.78 16 7 O -0.64 -36.75 15.56 -3.09 -0.05 -36.80 16 8 N -0.57 -30.00 5.29 -306.98 -1.62 -31.63 16 9 C -0.34 -19.65 9.68 84.04 0.81 -18.84 16 10 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 11 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 12 N -0.92 -49.99 13.05 21.67 0.28 -49.70 16 13 Si 0.99 43.41 29.55 68.60 2.03 45.43 16 14 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 15 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 17 C 0.55 14.59 7.41 86.88 0.64 15.23 16 18 O -0.57 -20.52 16.48 -3.78 -0.06 -20.58 16 19 C -0.10 -2.08 5.29 -19.88 -0.11 -2.19 16 20 C -0.14 -2.92 9.75 22.63 0.22 -2.70 16 21 C 0.10 1.67 11.17 84.67 0.95 2.62 16 22 N -0.49 -8.64 10.34 -196.02 -2.03 -10.66 16 23 C 0.10 1.20 11.17 84.67 0.95 2.14 16 24 C -0.14 -1.79 7.68 22.63 0.17 -1.61 16 25 H 0.10 0.45 6.89 -2.38 -0.02 0.44 16 26 H 0.09 0.90 8.03 -2.39 -0.02 0.88 16 27 H 0.08 0.87 5.83 -2.39 -0.01 0.85 16 28 H 0.12 1.79 8.07 -2.39 -0.02 1.77 16 29 H 0.08 1.94 7.36 -2.39 -0.02 1.92 16 30 H 0.03 1.18 8.10 -2.39 -0.02 1.16 16 31 H 0.06 2.02 8.10 -2.39 -0.02 2.01 16 32 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 35 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 36 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.20 0.93 8.06 -2.91 -0.02 0.90 16 39 H 0.18 1.12 5.27 -2.91 -0.02 1.10 16 Total: -1.00 -81.05 336.21 3.17 -77.88 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.35 Total: 26.71 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 6.71 Total: 14.47 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -5.81 Total: -107.11 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -0.11 Total: -57.38 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -81.05 3.17 -77.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298532.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.349 kcal (2) G-P(sol) polarization free energy of solvation -81.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds