Wall clock time and date at job start Tue Mar 31 2020 06:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35511 * 116.99809 * 2 1 4 4 C 1.39640 * 120.49122 * 180.02562 * 3 2 1 5 5 C 1.39151 * 118.20817 * 180.02562 * 4 3 2 6 6 C 1.48442 * 120.51791 * 180.02562 * 5 4 3 7 7 O 1.21484 * 119.99992 * 5.95684 * 6 5 4 8 8 N 1.34780 * 120.00127 * 185.95713 * 6 5 4 9 9 C 1.46500 * 120.00027 * 185.31484 * 8 6 5 10 10 C 1.50700 * 109.46784 * 269.99376 * 9 8 6 11 11 H 1.07997 * 120.00117 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99931 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00038 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00135 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46842 * 60.00803 * 14 12 10 16 16 H 1.48502 * 109.47146 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47399 * 300.00689 * 14 12 10 18 18 C 1.46500 * 119.99699 * 5.30998 * 8 6 5 19 19 C 1.52994 * 109.47254 * 275.75458 * 18 8 6 20 20 C 1.53006 * 117.49552 * 243.74705 * 19 18 8 21 21 C 1.53001 * 117.49884 * 175.09062 * 19 18 8 22 22 N 1.33276 * 118.96340 * 0.26951 * 5 4 3 23 23 C 1.31528 * 120.88478 * 359.44559 * 22 5 4 24 24 N 1.31897 * 121.99003 * 0.57648 * 23 22 5 25 25 H 1.08998 * 109.47588 * 59.99334 * 1 2 3 26 26 H 1.09001 * 109.47392 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.46991 * 299.99441 * 1 2 3 28 28 H 1.08004 * 120.89771 * 359.97438 * 4 3 2 29 29 H 1.09005 * 109.46885 * 149.99906 * 9 8 6 30 30 H 1.08994 * 109.47329 * 29.99425 * 9 8 6 31 31 H 0.96998 * 120.00402 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47030 * 35.75088 * 18 8 6 33 33 H 1.09001 * 109.46791 * 155.74945 * 18 8 6 34 34 H 1.09001 * 115.55523 * 29.41748 * 19 18 8 35 35 H 1.09000 * 117.50076 * 0.02562 * 20 19 18 36 36 H 1.08999 * 117.49514 * 145.01878 * 20 19 18 37 37 H 1.09005 * 117.50055 * 214.97647 * 21 19 18 38 38 H 1.08997 * 117.49876 * 359.97438 * 21 19 18 39 39 H 1.07999 * 119.00410 * 180.26464 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4379 1.2925 -0.0005 5 6 4.0197 2.5566 0.0000 6 6 5.4965 2.7066 -0.0011 7 8 6.2065 1.7271 -0.1117 8 7 6.0497 3.9296 0.1206 9 6 7.5009 4.0922 0.0030 10 6 8.1344 3.9472 1.3626 11 1 7.5178 3.7530 2.2277 12 6 9.5014 4.0615 1.5020 13 7 10.2523 4.2975 0.4484 14 14 10.2868 3.8811 3.1872 15 1 9.9819 2.5345 3.7337 16 1 11.7578 4.0460 3.0680 17 1 9.7450 4.9199 4.0996 18 6 5.1998 5.0964 0.3705 19 6 4.6496 5.6204 -0.9575 20 6 5.0704 7.0261 -1.3910 21 6 3.6430 6.7712 -0.9003 22 7 3.2303 3.6304 0.0066 23 6 1.9209 3.5058 0.0015 24 7 1.3313 2.3260 0.0010 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 4.0480 0.4013 -0.0005 29 1 7.7244 5.0807 -0.3985 30 1 7.8988 3.3296 -0.6665 31 1 11.2139 4.3783 0.5464 32 1 4.3718 4.8105 1.0192 33 1 5.7873 5.8770 0.8538 34 1 4.5146 4.8721 -1.7385 35 1 5.7395 7.5774 -0.7303 36 1 5.2119 7.2027 -2.4572 37 1 2.8461 6.7803 -1.6439 38 1 3.3725 7.1548 0.0834 39 1 1.3102 4.3965 0.0026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931938279.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:02 Heat of formation + Delta-G solvation = 25.765246 kcal Electronic energy + Delta-G solvation = -23331.502840 eV Core-core repulsion = 19855.923800 eV Total energy + Delta-G solvation = -3475.579039 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36285 -39.28733 -38.22732 -37.05787 -34.49682 -33.41887 -32.37881 -31.79019 -28.14148 -27.71804 -26.22177 -24.71271 -24.20135 -22.59114 -22.00628 -20.66533 -19.72970 -18.37857 -17.68826 -16.51564 -16.36811 -16.11880 -15.75678 -15.38781 -14.90151 -14.81047 -14.68730 -14.34223 -14.11410 -13.90638 -13.36017 -12.72540 -12.40077 -12.23909 -12.17026 -11.80666 -11.34716 -11.23556 -11.15284 -10.91536 -10.77188 -10.59975 -10.34377 -10.24269 -10.06766 -9.70480 -9.60689 -9.51664 -9.17794 -8.89425 -8.42539 -7.71304 -6.03969 -4.08788 0.62195 0.98917 2.66129 3.20518 3.33452 3.37571 3.40870 3.61636 3.93591 3.97679 4.11393 4.27354 4.45636 4.73049 4.96415 4.99816 5.03044 5.15941 5.24922 5.29959 5.32023 5.33532 5.50169 5.57663 5.86433 5.89699 5.98818 6.17700 6.23246 6.34726 6.42067 6.64935 6.74777 6.94912 7.06005 7.39037 7.49766 7.89914 7.94404 8.21079 8.31035 8.78914 8.97880 9.55878 11.04116 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.004853 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.471676 B = 5768.663848 C = 7022.741295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.300 6.300 3 C 0.357 3.643 4 C -0.188 4.188 5 C 0.168 3.832 6 C 0.551 3.449 7 O -0.522 6.522 8 N -0.565 5.565 9 C 0.246 3.754 10 C -0.527 4.527 11 H 0.058 0.942 12 C 0.063 3.937 13 N -0.894 5.894 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.147 3.853 19 C -0.126 4.126 20 C -0.191 4.191 21 C -0.174 4.174 22 N -0.498 5.498 23 C 0.323 3.677 24 N -0.572 5.572 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.163 0.837 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.812 0.050 -2.164 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.204 6.204 3 C 0.170 3.830 4 C -0.212 4.212 5 C 0.023 3.977 6 C 0.335 3.665 7 O -0.398 6.398 8 N -0.294 5.294 9 C 0.127 3.873 10 C -0.566 4.566 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.533 5.533 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C 0.024 3.976 19 C -0.145 4.145 20 C -0.228 4.228 21 C -0.211 4.211 22 N -0.219 5.219 23 C 0.035 3.965 24 N -0.303 5.303 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.181 0.819 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -19.598 0.041 -2.271 19.729 hybrid contribution 0.564 -0.643 0.824 1.188 sum -19.035 -0.602 -1.446 19.099 Atomic orbital electron populations 1.22946 0.76706 1.03307 1.02710 1.86262 1.23309 1.23915 1.86894 1.20008 0.89241 0.85043 0.88753 1.21942 0.92441 1.00934 1.05926 1.21983 0.96155 0.88234 0.91289 1.17678 0.84377 0.84669 0.79809 1.90792 1.60996 1.37708 1.50285 1.48153 1.10128 1.05142 1.65943 1.19415 0.71864 0.98161 0.97817 1.21366 0.92140 1.49492 0.93610 0.92416 1.24910 0.96991 0.94999 0.97028 1.69918 1.05528 1.48872 1.28965 0.86556 0.78033 0.78757 0.84073 1.20161 1.21172 1.20238 1.21303 0.93721 0.87955 0.94655 1.22459 1.01819 0.90521 0.99710 1.23099 0.97767 1.00723 1.01196 1.22783 0.92460 1.03860 1.02037 1.69124 1.05656 1.31867 1.15217 1.24784 0.88822 0.93516 0.89365 1.67991 1.42130 0.99399 1.20829 0.92008 0.88300 0.91984 0.81935 0.94275 0.93847 0.92627 0.88992 0.90690 0.88835 0.88788 0.89646 0.89753 0.89135 0.78262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.41 101.05 1.05 1.36 16 2 O -0.30 -3.64 10.49 -18.23 -0.19 -3.83 16 3 C 0.36 4.86 7.54 -16.68 -0.13 4.73 16 4 C -0.19 -2.92 9.68 -38.72 -0.37 -3.29 16 5 C 0.17 2.84 6.58 -82.70 -0.54 2.30 16 6 C 0.55 11.78 7.62 -12.05 -0.09 11.69 16 7 O -0.52 -13.03 16.07 5.38 0.09 -12.94 16 8 N -0.56 -12.14 2.47 -175.95 -0.43 -12.57 16 9 C 0.25 6.38 5.10 -5.19 -0.03 6.35 16 10 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 11 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 14 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.15 2.54 5.25 -4.04 -0.02 2.51 16 19 C -0.13 -1.85 4.22 -90.62 -0.38 -2.23 16 20 C -0.19 -2.58 10.18 -26.69 -0.27 -2.85 16 21 C -0.17 -2.01 10.25 -26.69 -0.27 -2.28 16 22 N -0.50 -7.04 4.80 -11.20 -0.05 -7.09 16 23 C 0.32 3.73 12.27 -92.29 -1.13 2.60 16 24 N -0.57 -7.08 9.36 -14.64 -0.14 -7.22 16 25 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.49 8.12 -51.92 -0.42 0.07 16 28 H 0.16 2.53 7.74 -52.48 -0.41 2.13 16 29 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 30 H 0.04 1.26 7.50 -51.93 -0.39 0.87 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.09 1.48 5.79 -51.93 -0.30 1.18 16 33 H 0.07 1.34 7.76 -51.93 -0.40 0.94 16 34 H 0.09 1.51 7.87 -51.93 -0.41 1.10 16 35 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.20 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -32.12 337.01 -7.79 -39.91 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.25 Total: 0.09 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -2.61 Total: 7.39 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.11 Total: -52.49 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.10 Total: -16.77 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.12 -7.79 -39.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931938279.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.678 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds