Wall clock time and date at job start Tue Mar 31 2020 06:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35511 * 116.99809 * 2 1 4 4 C 1.39640 * 120.49122 * 180.02562 * 3 2 1 5 5 C 1.39151 * 118.20817 * 180.02562 * 4 3 2 6 6 C 1.48442 * 120.51791 * 180.02562 * 5 4 3 7 7 O 1.21484 * 119.99992 * 5.95684 * 6 5 4 8 8 N 1.34780 * 120.00127 * 185.95713 * 6 5 4 9 9 C 1.46500 * 120.00027 * 185.31484 * 8 6 5 10 10 C 1.50700 * 109.46784 * 269.99376 * 9 8 6 11 11 H 1.07997 * 120.00117 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99931 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00038 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00135 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46842 * 60.00803 * 14 12 10 16 16 H 1.48502 * 109.47146 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47399 * 300.00689 * 14 12 10 18 18 C 1.46500 * 119.99699 * 5.30998 * 8 6 5 19 19 C 1.52994 * 109.47254 * 275.75458 * 18 8 6 20 20 C 1.53006 * 117.49552 * 243.74705 * 19 18 8 21 21 C 1.53001 * 117.49884 * 175.09062 * 19 18 8 22 22 N 1.33276 * 118.96340 * 0.26951 * 5 4 3 23 23 C 1.31528 * 120.88478 * 359.44559 * 22 5 4 24 24 N 1.31897 * 121.99003 * 0.57648 * 23 22 5 25 25 H 1.08998 * 109.47588 * 59.99334 * 1 2 3 26 26 H 1.09001 * 109.47392 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.46991 * 299.99441 * 1 2 3 28 28 H 1.08004 * 120.89771 * 359.97438 * 4 3 2 29 29 H 1.09005 * 109.46885 * 149.99906 * 9 8 6 30 30 H 1.08994 * 109.47329 * 29.99425 * 9 8 6 31 31 H 0.96998 * 120.00402 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47030 * 35.75088 * 18 8 6 33 33 H 1.09001 * 109.46791 * 155.74945 * 18 8 6 34 34 H 1.09001 * 115.55523 * 29.41748 * 19 18 8 35 35 H 1.09000 * 117.50076 * 0.02562 * 20 19 18 36 36 H 1.08999 * 117.49514 * 145.01878 * 20 19 18 37 37 H 1.09005 * 117.50055 * 214.97647 * 21 19 18 38 38 H 1.08997 * 117.49876 * 359.97438 * 21 19 18 39 39 H 1.07999 * 119.00410 * 180.26464 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4379 1.2925 -0.0005 5 6 4.0197 2.5566 0.0000 6 6 5.4965 2.7066 -0.0011 7 8 6.2065 1.7271 -0.1117 8 7 6.0497 3.9296 0.1206 9 6 7.5009 4.0922 0.0030 10 6 8.1344 3.9472 1.3626 11 1 7.5178 3.7530 2.2277 12 6 9.5014 4.0615 1.5020 13 7 10.2523 4.2975 0.4484 14 14 10.2868 3.8811 3.1872 15 1 9.9819 2.5345 3.7337 16 1 11.7578 4.0460 3.0680 17 1 9.7450 4.9199 4.0996 18 6 5.1998 5.0964 0.3705 19 6 4.6496 5.6204 -0.9575 20 6 5.0704 7.0261 -1.3910 21 6 3.6430 6.7712 -0.9003 22 7 3.2303 3.6304 0.0066 23 6 1.9209 3.5058 0.0015 24 7 1.3313 2.3260 0.0010 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 4.0480 0.4013 -0.0005 29 1 7.7244 5.0807 -0.3985 30 1 7.8988 3.3296 -0.6665 31 1 11.2139 4.3783 0.5464 32 1 4.3718 4.8105 1.0192 33 1 5.7873 5.8770 0.8538 34 1 4.5146 4.8721 -1.7385 35 1 5.7395 7.5774 -0.7303 36 1 5.2119 7.2027 -2.4572 37 1 2.8461 6.7803 -1.6439 38 1 3.3725 7.1548 0.0834 39 1 1.3102 4.3965 0.0026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931938279.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:02 Heat of formation + Delta-G solvation = 5.404568 kcal Electronic energy + Delta-G solvation = -23332.385745 eV Core-core repulsion = 19855.923800 eV Total energy + Delta-G solvation = -3476.461944 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.49570 -40.71568 -39.36117 -38.34727 -36.19645 -34.86492 -34.16221 -32.89765 -29.98175 -28.66311 -27.64833 -26.28162 -25.27258 -24.27893 -23.04226 -21.96782 -21.03668 -19.45193 -19.10027 -18.60286 -17.54556 -17.33480 -17.08911 -16.67664 -16.43363 -16.25538 -15.90493 -15.69938 -15.24256 -15.06822 -14.74961 -14.36959 -14.22777 -13.64677 -13.35157 -12.97099 -12.91769 -12.65154 -12.60022 -12.47012 -12.23619 -12.16988 -11.85820 -11.74511 -11.46149 -11.37293 -11.07309 -10.66394 -10.62022 -10.29244 -10.15875 -9.49917 -8.22234 -6.36968 -0.61777 -0.06552 1.37638 1.41848 1.48970 1.64167 1.75623 2.15394 2.40172 2.73866 2.85247 3.03310 3.07911 3.17951 3.53732 3.80213 4.00786 4.11163 4.19991 4.35282 4.42618 4.42808 4.50481 4.59541 4.71685 4.82538 4.93010 4.95059 4.99665 5.15952 5.18357 5.20864 5.43621 5.47843 5.56968 5.63854 5.81855 5.99086 6.03629 6.56422 6.70483 6.87727 7.14140 7.34846 8.85050 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.004853 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.471676 B = 5768.663848 C = 7022.741295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.310 6.310 3 C 0.367 3.633 4 C -0.200 4.200 5 C 0.159 3.841 6 C 0.545 3.455 7 O -0.574 6.574 8 N -0.570 5.570 9 C 0.263 3.737 10 C -0.545 4.545 11 H 0.052 0.948 12 C 0.012 3.988 13 N -0.926 5.926 14 Si 0.967 3.033 15 H -0.278 1.278 16 H -0.277 1.277 17 H -0.261 1.261 18 C 0.150 3.850 19 C -0.143 4.143 20 C -0.203 4.203 21 C -0.133 4.133 22 N -0.500 5.500 23 C 0.335 3.665 24 N -0.561 5.561 25 H 0.067 0.933 26 H 0.126 0.874 27 H 0.067 0.933 28 H 0.150 0.850 29 H 0.029 0.971 30 H 0.001 0.999 31 H 0.268 0.732 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.978 1.136 -1.178 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.213 6.213 3 C 0.178 3.822 4 C -0.225 4.225 5 C 0.016 3.984 6 C 0.330 3.670 7 O -0.453 6.453 8 N -0.298 5.298 9 C 0.143 3.857 10 C -0.584 4.584 11 H 0.070 0.930 12 C -0.188 4.188 13 N -0.565 5.565 14 Si 0.791 3.209 15 H -0.204 1.204 16 H -0.202 1.202 17 H -0.185 1.185 18 C 0.028 3.972 19 C -0.163 4.163 20 C -0.241 4.241 21 C -0.170 4.170 22 N -0.221 5.221 23 C 0.048 3.952 24 N -0.292 5.292 25 H 0.086 0.914 26 H 0.144 0.856 27 H 0.086 0.914 28 H 0.168 0.832 29 H 0.047 0.953 30 H 0.019 0.981 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -22.823 1.156 -1.285 22.889 hybrid contribution 1.416 -1.011 0.461 1.800 sum -21.407 0.146 -0.824 21.423 Atomic orbital electron populations 1.23287 0.74308 1.05427 1.03234 1.86264 1.25624 1.23164 1.86267 1.19940 0.88500 0.86010 0.87789 1.21835 0.93700 0.99979 1.06946 1.21148 0.93642 0.89744 0.93898 1.18307 0.86537 0.83695 0.78429 1.90741 1.62982 1.39183 1.52410 1.48132 1.08845 1.06912 1.65932 1.18860 0.74846 0.95878 0.96138 1.21618 0.92795 1.49819 0.94133 0.92958 1.25813 0.97470 0.94332 1.01137 1.70036 1.05931 1.49367 1.31184 0.85484 0.77378 0.78801 0.79258 1.20351 1.20165 1.18522 1.21493 0.93127 0.86045 0.96539 1.22197 1.05085 0.90999 0.97972 1.23158 0.99883 0.99557 1.01453 1.22899 0.91499 0.99245 1.03347 1.69037 1.06744 1.30622 1.15720 1.25715 0.87925 0.94692 0.86868 1.68153 1.41492 0.99231 1.20327 0.91395 0.85554 0.91413 0.83172 0.95260 0.98116 0.92298 0.87387 0.91887 0.90299 0.89653 0.89232 0.87293 0.87384 0.73551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.41 113.37 1.18 1.60 16 2 O -0.31 -6.94 10.49 -88.13 -0.92 -7.87 16 3 C 0.37 9.36 7.54 84.91 0.64 10.00 16 4 C -0.20 -6.25 9.68 22.83 0.22 -6.03 16 5 C 0.16 5.45 6.58 41.87 0.28 5.73 16 6 C 0.54 24.56 7.62 86.96 0.66 25.22 16 7 O -0.57 -30.80 16.07 -3.67 -0.06 -30.86 16 8 N -0.57 -25.75 2.47 -828.89 -2.05 -27.80 16 9 C 0.26 14.56 5.10 85.63 0.44 14.99 16 10 C -0.55 -31.97 9.39 25.60 0.24 -31.73 16 11 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 12 C 0.01 0.69 5.46 84.65 0.46 1.15 16 13 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 14 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 C 0.15 5.19 5.25 86.38 0.45 5.64 16 19 C -0.14 -4.09 4.22 -10.79 -0.05 -4.14 16 20 C -0.20 -5.27 10.18 30.62 0.31 -4.96 16 21 C -0.13 -2.59 10.25 30.62 0.31 -2.28 16 22 N -0.50 -13.23 4.80 -189.36 -0.91 -14.14 16 23 C 0.33 6.47 12.27 180.93 2.22 8.70 16 24 N -0.56 -12.06 9.36 -313.01 -2.93 -14.99 16 25 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 26 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 0.85 8.12 -2.38 -0.02 0.83 16 28 H 0.15 4.98 7.74 -2.91 -0.02 4.96 16 29 H 0.03 1.65 8.07 -2.38 -0.02 1.63 16 30 H 0.00 0.05 7.50 -2.39 -0.02 0.03 16 31 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.11 3.36 5.79 -2.39 -0.01 3.34 16 33 H 0.06 2.29 7.76 -2.39 -0.02 2.27 16 34 H 0.08 2.52 7.87 -2.39 -0.02 2.51 16 35 H 0.08 2.35 8.03 -2.39 -0.02 2.33 16 36 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 37 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.11 1.79 8.14 -2.39 -0.02 1.78 16 39 H 0.25 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -73.99 337.01 3.87 -70.12 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.06 Total: 10.28 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 7.37 Total: 23.89 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -5.60 Total: -112.88 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.98 Total: -38.73 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -73.99 3.87 -70.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931938279.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.523 kcal (2) G-P(sol) polarization free energy of solvation -73.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds