Wall clock time and date at job start Tue Mar 31 2020 06:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35512 * 117.00440 * 2 1 4 4 C 1.39559 * 120.48899 * 179.97438 * 3 2 1 5 5 C 1.39282 * 118.19994 * 180.02562 * 4 3 2 6 6 C 1.48242 * 120.52985 * 179.97438 * 5 4 3 7 7 O 1.21540 * 119.99727 * 7.38709 * 6 5 4 8 8 N 1.34778 * 120.00172 * 187.65700 * 6 5 4 9 9 C 1.36701 * 119.99799 * 184.41509 * 8 6 5 10 10 H 1.08000 * 119.99344 * 134.07300 * 9 8 6 11 11 C 1.39163 * 120.00143 * 314.07106 * 9 8 6 12 12 N 1.31277 * 120.00240 * 352.87738 * 11 9 8 13 13 Si 1.86800 * 120.00031 * 172.87340 * 11 9 8 14 14 H 1.48508 * 109.47084 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47023 * 119.99945 * 13 11 9 16 16 H 1.48504 * 109.47421 * 240.00539 * 13 11 9 17 17 C 1.46499 * 120.00022 * 4.41913 * 8 6 5 18 18 C 1.54270 * 110.03407 * 182.51983 * 17 8 6 19 19 C 1.54958 * 104.15833 * 217.13455 * 18 17 8 20 20 C 1.54896 * 102.77930 * 37.88842 * 19 18 17 21 21 C 1.53869 * 110.03529 * 65.29857 * 17 8 6 22 22 N 1.33374 * 118.94626 * 0.27831 * 5 4 3 23 23 C 1.31519 * 120.86625 * 359.43355 * 22 5 4 24 24 N 1.31898 * 121.99371 * 0.58137 * 23 22 5 25 25 H 1.08990 * 109.47216 * 300.00305 * 1 2 3 26 26 H 1.09000 * 109.46457 * 60.00464 * 1 2 3 27 27 H 1.08998 * 109.46698 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.90208 * 0.04253 * 4 3 2 29 29 H 0.96999 * 120.00232 * 185.01683 * 12 11 9 30 30 H 1.09001 * 110.01473 * 303.90889 * 17 8 6 31 31 H 1.08999 * 110.48349 * 335.78396 * 18 17 8 32 32 H 1.08999 * 110.48360 * 98.42211 * 18 17 8 33 33 H 1.08999 * 110.72130 * 279.57097 * 19 18 17 34 34 H 1.09003 * 110.92518 * 156.29117 * 19 18 17 35 35 H 1.09002 * 110.48168 * 203.40689 * 20 19 18 36 36 H 1.08990 * 110.59962 * 80.81485 * 20 19 18 37 37 H 1.08998 * 110.03773 * 238.57021 * 21 17 8 38 38 H 1.09005 * 110.03549 * 0.02562 * 21 17 8 39 39 H 1.07998 * 119.00582 * 180.26879 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4373 1.2922 0.0005 5 6 4.0197 2.5574 0.0011 6 6 5.4945 2.7076 0.0022 7 8 6.2049 1.7307 -0.1326 8 7 6.0476 3.9267 0.1582 9 6 7.4032 4.0786 0.0692 10 1 7.8188 4.8862 -0.5152 11 6 8.2477 3.1927 0.7315 12 7 7.7477 2.2987 1.5525 13 14 10.0929 3.2756 0.4523 14 1 10.3993 4.3630 -0.5116 15 1 10.7767 3.5503 1.7415 16 1 10.5695 1.9799 -0.0948 17 6 5.1961 5.0890 0.4233 18 6 6.0557 6.3677 0.4986 19 6 5.3899 7.2067 1.6185 20 6 4.9763 6.1304 2.6528 21 6 4.5096 4.9383 1.7921 22 7 3.2294 3.6318 0.0067 23 6 1.9202 3.5064 0.0005 24 7 1.3312 2.3263 0.0000 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 4.0473 0.4010 0.0003 29 1 8.3396 1.7299 2.0692 30 1 4.4463 5.1888 -0.3614 31 1 7.0832 6.1214 0.7663 32 1 6.0257 6.9039 -0.4499 33 1 4.5147 7.7329 1.2375 34 1 6.1012 7.9082 2.0545 35 1 4.1591 6.4943 3.2757 36 1 5.8276 5.8449 3.2705 37 1 3.4267 4.9659 1.6719 38 1 4.8103 4.0006 2.2595 39 1 1.3089 4.3967 0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933245459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:05 Heat of formation + Delta-G solvation = 12.855823 kcal Electronic energy + Delta-G solvation = -24252.465289 eV Core-core repulsion = 20776.326455 eV Total energy + Delta-G solvation = -3476.138834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.87354 -38.94401 -37.89560 -36.52839 -33.45962 -32.92983 -31.37108 -31.27258 -28.09386 -27.51509 -26.71236 -25.44910 -23.78585 -23.40362 -20.72420 -19.78818 -19.24478 -18.00226 -17.74059 -16.23329 -16.00499 -15.70966 -15.40646 -14.91333 -14.70671 -14.52422 -14.08247 -13.91541 -13.72501 -13.48323 -12.94260 -12.54230 -12.40650 -12.00257 -11.58643 -11.37922 -11.08788 -10.98417 -10.80644 -10.58257 -10.41143 -10.36127 -10.30051 -10.18870 -9.88552 -9.80704 -9.56189 -8.96526 -8.80972 -8.71617 -8.07407 -7.05698 -6.11614 -3.92506 1.17762 1.44938 3.05810 3.26353 3.33930 3.36641 3.87716 4.19512 4.32607 4.48476 4.79010 4.92526 5.17326 5.21188 5.26788 5.32991 5.39543 5.48356 5.53263 5.59993 5.69604 5.96819 6.01641 6.18380 6.25954 6.34105 6.37646 6.47593 6.55434 6.63542 6.64772 6.81152 7.02041 7.11522 7.16519 7.34489 7.40339 7.54203 8.21563 8.40306 8.97453 9.11678 9.57045 10.26339 10.90523 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016806 B = 0.006243 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.627053 B = 4483.750452 C = 5766.496623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.304 6.304 3 C 0.350 3.650 4 C -0.202 4.202 5 C 0.187 3.813 6 C 0.493 3.507 7 O -0.512 6.512 8 N -0.417 5.417 9 C -0.324 4.324 10 H 0.088 0.912 11 C 0.055 3.945 12 N -0.806 5.806 13 Si 0.913 3.087 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.281 1.281 17 C 0.140 3.860 18 C -0.131 4.131 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.116 4.116 22 N -0.512 5.512 23 C 0.313 3.687 24 N -0.586 5.586 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.156 0.844 29 H 0.264 0.736 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.253 3.832 -0.395 11.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.209 6.209 3 C 0.164 3.836 4 C -0.226 4.226 5 C 0.044 3.956 6 C 0.279 3.721 7 O -0.388 6.388 8 N -0.137 5.137 9 C -0.452 4.452 10 H 0.105 0.895 11 C -0.156 4.156 12 N -0.439 5.439 13 Si 0.740 3.260 14 H -0.194 1.194 15 H -0.210 1.210 16 H -0.207 1.207 17 C 0.036 3.964 18 C -0.169 4.169 19 C -0.157 4.157 20 C -0.159 4.159 21 C -0.155 4.155 22 N -0.233 5.233 23 C 0.025 3.975 24 N -0.318 5.318 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.174 0.826 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.249 3.584 -0.391 11.813 hybrid contribution 0.841 -0.713 0.133 1.111 sum -10.408 2.872 -0.257 10.800 Atomic orbital electron populations 1.22860 0.77356 1.02819 1.02456 1.86245 1.22810 1.24431 1.87386 1.19990 0.89355 0.84771 0.89522 1.21885 0.91875 1.01190 1.07686 1.22553 0.97304 0.87387 0.88394 1.17342 0.82964 0.85578 0.86233 1.90662 1.59766 1.37400 1.50943 1.43257 1.05664 1.04692 1.60047 1.19143 0.79842 1.15510 1.30725 0.89454 1.25446 0.99505 0.95538 0.95152 1.69886 1.35438 1.17514 1.21095 0.86105 0.83540 0.78334 0.78009 1.19357 1.20963 1.20682 1.21912 0.91957 0.86184 0.96342 1.22792 1.02187 0.94723 0.97208 1.22425 0.99386 0.97126 0.96802 1.22322 0.99947 0.96099 0.97510 1.22524 0.99469 0.97869 0.95613 1.69076 1.05293 1.32701 1.16269 1.24638 0.89237 0.93363 0.90263 1.67910 1.42077 0.99337 1.22512 0.92269 0.92280 0.88701 0.82622 0.92552 0.89550 0.88470 0.92848 0.92481 0.92537 0.93192 0.92060 0.92022 0.92300 0.78981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.41 101.05 1.05 1.50 16 2 O -0.30 -4.75 10.49 -18.23 -0.19 -4.94 16 3 C 0.35 6.15 7.53 -16.69 -0.13 6.02 16 4 C -0.20 -4.09 9.68 -38.70 -0.37 -4.46 16 5 C 0.19 4.06 6.18 -82.70 -0.51 3.55 16 6 C 0.49 12.79 6.50 -12.15 -0.08 12.71 16 7 O -0.51 -15.13 13.64 5.33 0.07 -15.05 16 8 N -0.42 -10.33 2.58 -107.48 -0.28 -10.61 16 9 C -0.32 -8.49 7.34 -15.04 -0.11 -8.60 16 10 H 0.09 2.18 6.96 -52.49 -0.37 1.82 16 11 C 0.06 1.50 4.74 -17.45 -0.08 1.41 16 12 N -0.81 -23.23 10.90 55.51 0.60 -22.62 16 13 Si 0.91 20.89 29.56 -169.99 -5.03 15.86 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.14 2.84 2.82 -66.81 -0.19 2.65 16 18 C -0.13 -2.39 5.77 -25.03 -0.14 -2.53 16 19 C -0.12 -1.83 6.91 -24.70 -0.17 -2.00 16 20 C -0.12 -2.02 6.83 -25.07 -0.17 -2.19 16 21 C -0.12 -2.22 4.88 -25.62 -0.13 -2.35 16 22 N -0.51 -9.44 4.40 -11.21 -0.05 -9.49 16 23 C 0.31 4.83 12.04 -92.30 -1.11 3.72 16 24 N -0.59 -9.45 9.36 -14.66 -0.14 -9.58 16 25 H 0.06 0.64 8.12 -51.93 -0.42 0.21 16 26 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.16 3.25 7.75 -52.49 -0.41 2.84 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 30 H 0.09 1.70 6.28 -51.93 -0.33 1.37 16 31 H 0.10 1.99 5.85 -51.93 -0.30 1.69 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.07 6.53 -51.93 -0.34 0.74 16 38 H 0.06 1.35 7.44 -51.93 -0.39 0.97 16 39 H 0.19 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -31.44 316.15 -7.45 -38.88 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.06 Total: 3.34 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -2.14 Total: 9.45 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.14 Total: -52.30 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.12 Total: -20.00 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.44 -7.45 -38.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933245459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.740 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds