Wall clock time and date at job start Tue Mar 31 2020 06:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35512 * 117.00440 * 2 1 4 4 C 1.39559 * 120.48899 * 179.97438 * 3 2 1 5 5 C 1.39282 * 118.19994 * 180.02562 * 4 3 2 6 6 C 1.48242 * 120.52985 * 179.97438 * 5 4 3 7 7 O 1.21540 * 119.99727 * 7.38709 * 6 5 4 8 8 N 1.34778 * 120.00172 * 187.65700 * 6 5 4 9 9 C 1.36701 * 119.99799 * 184.41509 * 8 6 5 10 10 H 1.08000 * 119.99344 * 134.07300 * 9 8 6 11 11 C 1.39163 * 120.00143 * 314.07106 * 9 8 6 12 12 N 1.31277 * 120.00240 * 352.87738 * 11 9 8 13 13 Si 1.86800 * 120.00031 * 172.87340 * 11 9 8 14 14 H 1.48508 * 109.47084 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47023 * 119.99945 * 13 11 9 16 16 H 1.48504 * 109.47421 * 240.00539 * 13 11 9 17 17 C 1.46499 * 120.00022 * 4.41913 * 8 6 5 18 18 C 1.54270 * 110.03407 * 182.51983 * 17 8 6 19 19 C 1.54958 * 104.15833 * 217.13455 * 18 17 8 20 20 C 1.54896 * 102.77930 * 37.88842 * 19 18 17 21 21 C 1.53869 * 110.03529 * 65.29857 * 17 8 6 22 22 N 1.33374 * 118.94626 * 0.27831 * 5 4 3 23 23 C 1.31519 * 120.86625 * 359.43355 * 22 5 4 24 24 N 1.31898 * 121.99371 * 0.58137 * 23 22 5 25 25 H 1.08990 * 109.47216 * 300.00305 * 1 2 3 26 26 H 1.09000 * 109.46457 * 60.00464 * 1 2 3 27 27 H 1.08998 * 109.46698 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.90208 * 0.04253 * 4 3 2 29 29 H 0.96999 * 120.00232 * 185.01683 * 12 11 9 30 30 H 1.09001 * 110.01473 * 303.90889 * 17 8 6 31 31 H 1.08999 * 110.48349 * 335.78396 * 18 17 8 32 32 H 1.08999 * 110.48360 * 98.42211 * 18 17 8 33 33 H 1.08999 * 110.72130 * 279.57097 * 19 18 17 34 34 H 1.09003 * 110.92518 * 156.29117 * 19 18 17 35 35 H 1.09002 * 110.48168 * 203.40689 * 20 19 18 36 36 H 1.08990 * 110.59962 * 80.81485 * 20 19 18 37 37 H 1.08998 * 110.03773 * 238.57021 * 21 17 8 38 38 H 1.09005 * 110.03549 * 0.02562 * 21 17 8 39 39 H 1.07998 * 119.00582 * 180.26879 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4373 1.2922 0.0005 5 6 4.0197 2.5574 0.0011 6 6 5.4945 2.7076 0.0022 7 8 6.2049 1.7307 -0.1326 8 7 6.0476 3.9267 0.1582 9 6 7.4032 4.0786 0.0692 10 1 7.8188 4.8862 -0.5152 11 6 8.2477 3.1927 0.7315 12 7 7.7477 2.2987 1.5525 13 14 10.0929 3.2756 0.4523 14 1 10.3993 4.3630 -0.5116 15 1 10.7767 3.5503 1.7415 16 1 10.5695 1.9799 -0.0948 17 6 5.1961 5.0890 0.4233 18 6 6.0557 6.3677 0.4986 19 6 5.3899 7.2067 1.6185 20 6 4.9763 6.1304 2.6528 21 6 4.5096 4.9383 1.7921 22 7 3.2294 3.6318 0.0067 23 6 1.9202 3.5064 0.0005 24 7 1.3312 2.3263 0.0000 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 4.0473 0.4010 0.0003 29 1 8.3396 1.7299 2.0692 30 1 4.4463 5.1888 -0.3614 31 1 7.0832 6.1214 0.7663 32 1 6.0257 6.9039 -0.4499 33 1 4.5147 7.7329 1.2375 34 1 6.1012 7.9082 2.0545 35 1 4.1591 6.4943 3.2757 36 1 5.8276 5.8449 3.2705 37 1 3.4267 4.9659 1.6719 38 1 4.8103 4.0006 2.2595 39 1 1.3089 4.3967 0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933245459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:04 Heat of formation + Delta-G solvation = -7.542728 kcal Electronic energy + Delta-G solvation = -24253.349836 eV Core-core repulsion = 20776.326455 eV Total energy + Delta-G solvation = -3477.023381 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.32633 -40.55541 -39.27470 -38.24382 -35.31951 -34.45082 -33.22931 -32.74328 -29.58485 -28.62467 -28.31468 -27.14785 -25.21970 -25.00753 -22.36051 -21.23983 -20.80518 -19.57073 -19.19634 -17.98266 -17.40345 -17.23063 -16.91108 -16.52188 -16.21994 -16.04570 -15.56890 -15.46045 -15.26251 -15.01963 -14.61058 -14.16215 -13.96803 -13.30456 -13.01802 -12.95062 -12.72693 -12.61304 -12.51461 -12.11785 -11.94664 -11.87885 -11.73570 -11.67934 -11.31785 -11.26293 -11.10793 -10.86327 -10.55623 -10.14933 -9.89639 -9.02813 -8.13111 -5.99309 -0.37535 0.03641 1.40609 1.45966 1.55348 1.80217 2.24720 2.39125 2.80890 3.03167 3.14236 3.23235 3.35594 3.82087 3.96265 4.02382 4.11708 4.21959 4.40805 4.41820 4.44779 4.64021 4.70997 4.78341 4.86726 4.91488 5.00166 5.02912 5.17452 5.23422 5.25353 5.35338 5.47647 5.58739 5.66490 5.76274 5.83115 6.06207 6.23316 6.94292 7.00639 7.20731 7.63015 8.31593 8.89922 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016806 B = 0.006243 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.627053 B = 4483.750452 C = 5766.496623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.314 6.314 3 C 0.364 3.636 4 C -0.223 4.223 5 C 0.176 3.824 6 C 0.479 3.521 7 O -0.565 6.565 8 N -0.427 5.427 9 C -0.337 4.337 10 H 0.096 0.904 11 C 0.004 3.996 12 N -0.851 5.851 13 Si 0.976 3.024 14 H -0.250 1.250 15 H -0.275 1.275 16 H -0.295 1.295 17 C 0.134 3.866 18 C -0.132 4.132 19 C -0.105 4.105 20 C -0.119 4.119 21 C -0.106 4.106 22 N -0.515 5.515 23 C 0.325 3.675 24 N -0.570 5.570 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.127 0.873 28 H 0.135 0.865 29 H 0.257 0.743 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.083 0.917 38 H 0.008 0.992 39 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.018 6.279 -0.711 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.218 6.218 3 C 0.176 3.824 4 C -0.248 4.248 5 C 0.032 3.968 6 C 0.266 3.734 7 O -0.445 6.445 8 N -0.146 5.146 9 C -0.466 4.466 10 H 0.113 0.887 11 C -0.203 4.203 12 N -0.487 5.487 13 Si 0.801 3.199 14 H -0.173 1.173 15 H -0.201 1.201 16 H -0.222 1.222 17 C 0.031 3.969 18 C -0.170 4.170 19 C -0.143 4.143 20 C -0.157 4.157 21 C -0.145 4.145 22 N -0.237 5.237 23 C 0.038 3.962 24 N -0.302 5.302 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.145 0.855 28 H 0.153 0.847 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.027 0.973 39 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -14.045 6.082 -0.706 15.322 hybrid contribution 1.427 -1.518 0.184 2.091 sum -12.618 4.564 -0.523 13.429 Atomic orbital electron populations 1.23258 0.74492 1.05306 1.03106 1.86249 1.25564 1.23395 1.86608 1.19890 0.88423 0.85969 0.88091 1.21754 0.93469 1.00085 1.09493 1.21881 0.95582 0.88941 0.90362 1.18002 0.84878 0.85362 0.85171 1.90602 1.61814 1.39046 1.53020 1.43529 1.05897 1.05723 1.59476 1.19447 0.80987 1.15476 1.30659 0.88692 1.26315 1.03883 0.95197 0.94926 1.70053 1.36512 1.19121 1.22982 0.85144 0.78435 0.77922 0.78442 1.17326 1.20059 1.22185 1.22195 0.92085 0.85409 0.97224 1.22762 1.00390 0.94438 0.99388 1.22388 1.00631 0.96404 0.94850 1.22317 1.00065 0.95619 0.97692 1.22413 1.00534 0.96552 0.94992 1.69014 1.06511 1.31280 1.16845 1.25704 0.88367 0.94760 0.87401 1.68103 1.41237 0.99059 1.21828 0.91636 0.91459 0.85488 0.84728 0.93328 0.88465 0.91400 0.91100 0.89375 0.90945 0.90106 0.94560 0.89820 0.97273 0.73661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.41 113.37 1.18 1.80 16 2 O -0.31 -9.35 10.49 -88.14 -0.92 -10.27 16 3 C 0.36 12.40 7.53 84.88 0.64 13.04 16 4 C -0.22 -9.33 9.68 22.84 0.22 -9.11 16 5 C 0.18 7.82 6.18 41.82 0.26 8.08 16 6 C 0.48 26.21 6.50 86.90 0.56 26.77 16 7 O -0.56 -35.83 13.64 -3.84 -0.05 -35.88 16 8 N -0.43 -21.97 2.58 -612.24 -1.58 -23.55 16 9 C -0.34 -18.34 7.34 84.16 0.62 -17.73 16 10 H 0.10 4.86 6.96 -2.91 -0.02 4.84 16 11 C 0.00 0.21 4.74 85.00 0.40 0.61 16 12 N -0.85 -52.33 10.90 21.70 0.24 -52.10 16 13 Si 0.98 44.63 29.56 68.60 2.03 46.66 16 14 H -0.25 -10.48 7.11 99.48 0.71 -9.78 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 17 C 0.13 5.37 2.82 45.72 0.13 5.50 16 18 C -0.13 -4.61 5.77 31.69 0.18 -4.43 16 19 C -0.11 -2.86 6.91 31.91 0.22 -2.63 16 20 C -0.12 -3.75 6.83 31.67 0.22 -3.54 16 21 C -0.11 -4.00 4.88 31.32 0.15 -3.84 16 22 N -0.51 -18.21 4.40 -189.39 -0.83 -19.05 16 23 C 0.32 8.83 12.04 180.94 2.18 11.01 16 24 N -0.57 -16.63 9.36 -313.02 -2.93 -19.56 16 25 H 0.06 1.19 8.12 -2.39 -0.02 1.17 16 26 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 27 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.13 6.10 7.75 -2.91 -0.02 6.08 16 29 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.10 3.66 6.28 -2.39 -0.01 3.64 16 31 H 0.07 2.79 5.85 -2.39 -0.01 2.78 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 36 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 2.70 6.53 -2.39 -0.02 2.69 16 38 H 0.01 0.40 7.44 -2.38 -0.02 0.39 16 39 H 0.25 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -74.79 316.15 3.97 -70.82 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.07 Total: 17.41 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 6.96 Total: 25.52 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -5.11 Total: -114.25 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -0.98 Total: -46.15 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -74.79 3.97 -70.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933245459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.273 kcal (2) G-P(sol) polarization free energy of solvation -74.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds