Wall clock time and date at job start Tue Mar 31 2020 06:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35471 * 117.00045 * 2 1 4 4 N 1.32434 * 119.10660 * 0.02562 * 3 2 1 5 5 C 1.32181 * 120.99548 * 179.97438 * 4 3 2 6 6 C 1.38722 * 119.23981 * 0.02562 * 5 4 3 7 7 C 1.39607 * 118.37627 * 0.02562 * 6 5 4 8 8 C 1.48241 * 120.52642 * 180.02562 * 7 6 5 9 9 O 1.21547 * 119.99729 * 352.97525 * 8 7 6 10 10 N 1.34779 * 120.00369 * 172.97866 * 8 7 6 11 11 C 1.36684 * 119.99478 * 3.65322 * 10 8 7 12 12 H 1.07998 * 120.00264 * 115.36087 * 11 10 8 13 13 C 1.39183 * 120.00151 * 295.35516 * 11 10 8 14 14 N 1.31278 * 119.99493 * 352.51382 * 13 11 10 15 15 Si 1.86799 * 120.00406 * 172.51574 * 13 11 10 16 16 H 1.48502 * 109.47123 * 89.99849 * 15 13 11 17 17 H 1.48493 * 109.47099 * 210.00255 * 15 13 11 18 18 H 1.48496 * 109.46754 * 330.00331 * 15 13 11 19 19 C 1.46490 * 120.00239 * 183.64924 * 10 8 7 20 20 C 1.55235 * 110.58382 * 231.43644 * 19 10 8 21 21 C 1.54892 * 102.58757 * 203.34289 * 20 19 10 22 22 C 1.54258 * 104.31712 * 37.92919 * 21 20 19 23 23 C 1.53878 * 106.59710 * 336.32600 * 22 21 20 24 24 N 1.32072 * 119.11331 * 180.28282 * 3 2 1 25 25 H 1.09003 * 109.47076 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46921 * 299.99487 * 1 2 3 27 27 H 1.09001 * 109.47172 * 59.99503 * 1 2 3 28 28 H 1.08008 * 120.38360 * 180.02562 * 5 4 3 29 29 H 1.07997 * 120.81691 * 179.97438 * 6 5 4 30 30 H 0.97005 * 119.99451 * 179.97438 * 14 13 11 31 31 H 1.08996 * 110.43673 * 354.02100 * 19 10 8 32 32 H 1.09001 * 110.90129 * 85.04714 * 20 19 10 33 33 H 1.09008 * 110.76639 * 321.56930 * 20 19 10 34 34 H 1.09000 * 110.48322 * 279.18292 * 21 20 19 35 35 H 1.09004 * 110.48430 * 156.68040 * 21 20 19 36 36 H 1.08995 * 110.03151 * 95.60771 * 22 21 20 37 37 H 1.08993 * 110.03417 * 216.99295 * 22 21 20 38 38 H 1.09005 * 110.03376 * 119.28303 * 23 22 21 39 39 H 1.08998 * 110.03486 * 240.66443 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2070 0.0000 4 7 1.3056 2.3064 0.0005 5 6 1.8665 3.5032 0.0010 6 6 3.2501 3.6031 0.0005 7 6 4.0003 2.4257 -0.0011 8 6 5.4819 2.4769 -0.0012 9 8 6.0531 3.5422 -0.1286 10 7 6.1954 1.3422 0.1399 11 6 5.5553 0.1365 0.2081 12 1 5.7047 -0.5989 -0.5686 13 6 4.7109 -0.1437 1.2785 14 7 4.6419 0.6850 2.2943 15 14 3.6761 -1.6988 1.2697 16 1 4.4385 -2.8043 1.9036 17 1 2.4220 -1.4631 2.0292 18 1 3.3452 -2.0652 -0.1308 19 6 7.6569 1.4012 0.2202 20 6 8.2994 0.4225 -0.7991 21 6 9.6974 0.1643 -0.1842 22 6 9.4407 0.1060 1.3358 23 6 8.1433 0.8924 1.5929 24 7 3.3639 1.2557 -0.0057 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.2547 4.3933 0.0019 29 1 3.7352 4.5680 0.0005 30 1 4.0531 0.4899 3.0401 31 1 8.0070 2.4184 0.0445 32 1 8.3891 0.8872 -1.7810 33 1 7.7271 -0.5033 -0.8595 34 1 10.3770 0.9818 -0.4251 35 1 10.1014 -0.7836 -0.5396 36 1 9.3191 -0.9293 1.6544 37 1 10.2699 0.5666 1.8725 38 1 7.3920 0.2388 2.0363 39 1 8.3423 1.7350 2.2551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933247340.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:39 Heat of formation + Delta-G solvation = 10.000386 kcal Electronic energy + Delta-G solvation = -24611.591822 eV Core-core repulsion = 21135.329167 eV Total energy + Delta-G solvation = -3476.262655 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57109 -38.87747 -37.65564 -36.54973 -34.38611 -32.76366 -31.29752 -30.70772 -27.93012 -27.36839 -26.96061 -25.04751 -24.08529 -23.04221 -20.44692 -19.95111 -19.20518 -18.10399 -17.42506 -16.40270 -15.87399 -15.67001 -15.27668 -14.92272 -14.61069 -14.27014 -14.05638 -13.77049 -13.54177 -13.22005 -13.00562 -12.60544 -12.46331 -11.70439 -11.53116 -11.32999 -11.15415 -10.99688 -10.87957 -10.58447 -10.43650 -10.35794 -10.25435 -10.15457 -9.94231 -9.80993 -9.55896 -9.10420 -8.88242 -8.38463 -7.73870 -7.15235 -6.22490 -4.08758 1.43434 1.74386 2.95809 3.43914 3.48064 3.58553 3.86109 4.27531 4.52397 4.59921 4.84365 5.20954 5.34967 5.35410 5.41213 5.43960 5.48943 5.50824 5.64883 5.70775 5.82941 5.93346 6.18420 6.21243 6.22747 6.30220 6.35884 6.45625 6.53913 6.56892 6.74147 6.77033 7.01156 7.09056 7.36375 7.39064 7.62361 7.74113 8.05975 8.63093 8.79001 9.12411 9.50860 9.94372 10.83201 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.007223 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.197747 B = 3875.618154 C = 4843.329720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.292 6.292 3 C 0.462 3.538 4 N -0.578 5.578 5 C 0.163 3.837 6 C -0.230 4.230 7 C 0.226 3.774 8 C 0.549 3.451 9 O -0.597 6.597 10 N -0.408 5.408 11 C -0.338 4.338 12 H 0.080 0.920 13 C 0.114 3.886 14 N -0.874 5.874 15 Si 0.924 3.076 16 H -0.295 1.295 17 H -0.285 1.285 18 H -0.263 1.263 19 C 0.132 3.868 20 C -0.126 4.126 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.123 4.123 24 N -0.413 5.413 25 H 0.094 0.906 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.164 0.836 29 H 0.149 0.851 30 H 0.264 0.736 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.091 0.909 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 -0.129 -2.901 3.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.194 6.194 3 C 0.160 3.840 4 N -0.308 5.308 5 C -0.002 4.002 6 C -0.254 4.254 7 C 0.076 3.924 8 C 0.337 3.663 9 O -0.482 6.482 10 N -0.124 5.124 11 C -0.465 4.465 12 H 0.098 0.902 13 C -0.095 4.095 14 N -0.510 5.510 15 Si 0.753 3.247 16 H -0.223 1.223 17 H -0.211 1.211 18 H -0.187 1.187 19 C 0.029 3.971 20 C -0.165 4.165 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.162 4.162 24 N -0.138 5.138 25 H 0.112 0.888 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.181 0.819 29 H 0.167 0.833 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.476 -0.817 -2.799 3.825 hybrid contribution -0.678 0.123 0.430 0.813 sum -3.154 -0.694 -2.368 4.005 Atomic orbital electron populations 1.22829 0.77259 1.02615 1.02247 1.86103 1.22181 1.23315 1.87819 1.21402 0.87501 0.84103 0.90977 1.67759 1.42342 0.99588 1.21161 1.22643 0.92199 0.93968 0.91426 1.22686 0.95431 1.01112 1.06195 1.21537 0.95587 0.86735 0.88502 1.18076 0.84498 0.84672 0.79067 1.90612 1.70566 1.30544 1.56452 1.43004 1.03267 1.05613 1.60548 1.18793 1.26514 0.93540 1.07703 0.90243 1.25314 0.94451 0.96830 0.92897 1.69840 1.36536 1.37241 1.07370 0.86030 0.78947 0.80845 0.78925 1.22254 1.21140 1.18713 1.21994 0.82625 0.98401 0.94106 1.22785 0.95169 1.00953 0.97546 1.22267 0.97269 1.00434 0.95868 1.22063 0.97661 1.00188 0.95744 1.22333 0.96637 0.99741 0.97473 1.69360 1.04046 1.27773 1.12644 0.88799 0.92462 0.92314 0.81858 0.83276 0.92601 0.90160 0.92656 0.89990 0.92415 0.92418 0.92363 0.93017 0.89049 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.70 10.36 101.05 1.05 1.74 16 2 O -0.29 -6.06 7.80 -18.10 -0.14 -6.20 16 3 C 0.46 10.21 8.22 -91.36 -0.75 9.46 16 4 N -0.58 -11.22 9.20 -14.75 -0.14 -11.36 16 5 C 0.16 2.82 11.30 -17.22 -0.19 2.63 16 6 C -0.23 -4.61 9.71 -38.89 -0.38 -4.98 16 7 C 0.23 5.41 5.93 -82.66 -0.49 4.92 16 8 C 0.55 14.12 7.21 -12.15 -0.09 14.03 16 9 O -0.60 -15.80 15.82 5.32 0.08 -15.72 16 10 N -0.41 -10.13 2.34 -106.72 -0.25 -10.38 16 11 C -0.34 -8.56 5.98 -15.04 -0.09 -8.65 16 12 H 0.08 2.02 7.04 -52.49 -0.37 1.65 16 13 C 0.11 2.93 2.75 -17.44 -0.05 2.88 16 14 N -0.87 -23.55 12.20 55.51 0.68 -22.87 16 15 Si 0.92 21.81 25.88 -169.99 -4.40 17.41 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 19 C 0.13 2.88 3.25 -66.09 -0.21 2.67 16 20 C -0.13 -2.34 6.41 -24.55 -0.16 -2.50 16 21 C -0.12 -1.87 6.82 -25.07 -0.17 -2.04 16 22 C -0.12 -1.96 6.80 -25.62 -0.17 -2.14 16 23 C -0.12 -2.55 6.43 -25.61 -0.16 -2.71 16 24 N -0.41 -10.04 4.56 -11.30 -0.05 -10.09 16 25 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 27 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 28 H 0.16 2.03 8.06 -52.48 -0.42 1.61 16 29 H 0.15 2.73 7.75 -52.49 -0.41 2.33 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.08 1.82 6.99 -51.93 -0.36 1.45 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.61 6.58 -51.92 -0.34 1.27 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 2.17 7.09 -51.93 -0.37 1.80 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -30.22 315.26 -6.54 -36.76 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.21 Total: 2.37 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: -1.87 Total: 15.32 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.24 Total: -54.69 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.06 Total: -21.92 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.40 Total: 17.41 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.22 -6.54 -36.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933247340.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.762 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds