Wall clock time and date at job start Tue Mar 31 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35471 * 117.00045 * 2 1 4 4 N 1.32434 * 119.10660 * 0.02562 * 3 2 1 5 5 C 1.32181 * 120.99548 * 179.97438 * 4 3 2 6 6 C 1.38722 * 119.23981 * 0.02562 * 5 4 3 7 7 C 1.39607 * 118.37627 * 0.02562 * 6 5 4 8 8 C 1.48241 * 120.52642 * 180.02562 * 7 6 5 9 9 O 1.21547 * 119.99729 * 352.97525 * 8 7 6 10 10 N 1.34779 * 120.00369 * 172.97866 * 8 7 6 11 11 C 1.36684 * 119.99478 * 3.65322 * 10 8 7 12 12 H 1.07998 * 120.00264 * 115.36087 * 11 10 8 13 13 C 1.39183 * 120.00151 * 295.35516 * 11 10 8 14 14 N 1.31278 * 119.99493 * 352.51382 * 13 11 10 15 15 Si 1.86799 * 120.00406 * 172.51574 * 13 11 10 16 16 H 1.48502 * 109.47123 * 89.99849 * 15 13 11 17 17 H 1.48493 * 109.47099 * 210.00255 * 15 13 11 18 18 H 1.48496 * 109.46754 * 330.00331 * 15 13 11 19 19 C 1.46490 * 120.00239 * 183.64924 * 10 8 7 20 20 C 1.55235 * 110.58382 * 231.43644 * 19 10 8 21 21 C 1.54892 * 102.58757 * 203.34289 * 20 19 10 22 22 C 1.54258 * 104.31712 * 37.92919 * 21 20 19 23 23 C 1.53878 * 106.59710 * 336.32600 * 22 21 20 24 24 N 1.32072 * 119.11331 * 180.28282 * 3 2 1 25 25 H 1.09003 * 109.47076 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46921 * 299.99487 * 1 2 3 27 27 H 1.09001 * 109.47172 * 59.99503 * 1 2 3 28 28 H 1.08008 * 120.38360 * 180.02562 * 5 4 3 29 29 H 1.07997 * 120.81691 * 179.97438 * 6 5 4 30 30 H 0.97005 * 119.99451 * 179.97438 * 14 13 11 31 31 H 1.08996 * 110.43673 * 354.02100 * 19 10 8 32 32 H 1.09001 * 110.90129 * 85.04714 * 20 19 10 33 33 H 1.09008 * 110.76639 * 321.56930 * 20 19 10 34 34 H 1.09000 * 110.48322 * 279.18292 * 21 20 19 35 35 H 1.09004 * 110.48430 * 156.68040 * 21 20 19 36 36 H 1.08995 * 110.03151 * 95.60771 * 22 21 20 37 37 H 1.08993 * 110.03417 * 216.99295 * 22 21 20 38 38 H 1.09005 * 110.03376 * 119.28303 * 23 22 21 39 39 H 1.08998 * 110.03486 * 240.66443 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2070 0.0000 4 7 1.3056 2.3064 0.0005 5 6 1.8665 3.5032 0.0010 6 6 3.2501 3.6031 0.0005 7 6 4.0003 2.4257 -0.0011 8 6 5.4819 2.4769 -0.0012 9 8 6.0531 3.5422 -0.1286 10 7 6.1954 1.3422 0.1399 11 6 5.5553 0.1365 0.2081 12 1 5.7047 -0.5989 -0.5686 13 6 4.7109 -0.1437 1.2785 14 7 4.6419 0.6850 2.2943 15 14 3.6761 -1.6988 1.2697 16 1 4.4385 -2.8043 1.9036 17 1 2.4220 -1.4631 2.0292 18 1 3.3452 -2.0652 -0.1308 19 6 7.6569 1.4012 0.2202 20 6 8.2994 0.4225 -0.7991 21 6 9.6974 0.1643 -0.1842 22 6 9.4407 0.1060 1.3358 23 6 8.1433 0.8924 1.5929 24 7 3.3639 1.2557 -0.0057 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.2547 4.3933 0.0019 29 1 3.7352 4.5680 0.0005 30 1 4.0531 0.4899 3.0401 31 1 8.0070 2.4184 0.0445 32 1 8.3891 0.8872 -1.7810 33 1 7.7271 -0.5033 -0.8595 34 1 10.3770 0.9818 -0.4251 35 1 10.1014 -0.7836 -0.5396 36 1 9.3191 -0.9293 1.6544 37 1 10.2699 0.5666 1.8725 38 1 7.3920 0.2388 2.0363 39 1 8.3423 1.7350 2.2551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933247340.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:38 Heat of formation + Delta-G solvation = -10.263013 kcal Electronic energy + Delta-G solvation = -24612.470508 eV Core-core repulsion = 21135.329167 eV Total energy + Delta-G solvation = -3477.141342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.18440 -40.63993 -39.17041 -38.23624 -36.20887 -34.39443 -33.23291 -32.28359 -29.44067 -28.88516 -28.32540 -26.94167 -25.75872 -24.60689 -22.15195 -21.49014 -20.85867 -19.74154 -19.05345 -18.10624 -17.39189 -17.33244 -17.14169 -16.54595 -16.21810 -15.98628 -15.54672 -15.50192 -15.16491 -14.66436 -14.60540 -14.25757 -14.12040 -13.31732 -13.19446 -12.93795 -12.88864 -12.72513 -12.32487 -12.11747 -12.00950 -11.93831 -11.85728 -11.82705 -11.63901 -11.34372 -11.16963 -10.96858 -10.73585 -9.95050 -9.52055 -9.07092 -8.20651 -6.08524 -0.25359 0.22028 1.27853 1.51642 1.59671 1.88823 2.04324 2.43442 2.74359 3.10839 3.17405 3.30601 3.80913 3.86576 3.94515 3.96603 4.19669 4.20841 4.36242 4.37767 4.39577 4.62053 4.64624 4.71725 4.75862 4.82738 4.90286 4.95197 5.10239 5.19671 5.20564 5.28548 5.47133 5.58370 5.61126 5.62767 5.82400 6.15997 6.23777 6.63233 7.08517 7.24584 7.57881 8.00064 8.84751 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.007223 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.197747 B = 3875.618154 C = 4843.329720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.316 6.316 3 C 0.450 3.550 4 N -0.567 5.567 5 C 0.184 3.816 6 C -0.232 4.232 7 C 0.191 3.809 8 C 0.532 3.468 9 O -0.619 6.619 10 N -0.415 5.415 11 C -0.336 4.336 12 H 0.074 0.926 13 C 0.096 3.904 14 N -0.898 5.898 15 Si 0.964 3.036 16 H -0.291 1.291 17 H -0.290 1.290 18 H -0.265 1.265 19 C 0.120 3.880 20 C -0.121 4.121 21 C -0.109 4.109 22 C -0.111 4.111 23 C -0.119 4.119 24 N -0.447 5.447 25 H 0.123 0.877 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.223 0.777 29 H 0.163 0.837 30 H 0.258 0.742 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 -0.195 -3.386 4.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.219 6.219 3 C 0.148 3.852 4 N -0.298 5.298 5 C 0.018 3.982 6 C -0.255 4.255 7 C 0.043 3.957 8 C 0.320 3.680 9 O -0.506 6.506 10 N -0.131 5.131 11 C -0.463 4.463 12 H 0.091 0.909 13 C -0.111 4.111 14 N -0.534 5.534 15 Si 0.792 3.208 16 H -0.218 1.218 17 H -0.216 1.216 18 H -0.189 1.189 19 C 0.017 3.983 20 C -0.159 4.159 21 C -0.147 4.147 22 C -0.149 4.149 23 C -0.157 4.157 24 N -0.173 5.173 25 H 0.141 0.859 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.240 0.760 29 H 0.180 0.820 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.944 -0.918 -3.291 4.510 hybrid contribution -0.634 0.223 0.544 0.864 sum -3.578 -0.696 -2.747 4.564 Atomic orbital electron populations 1.23198 0.74445 1.04897 1.03009 1.86050 1.25006 1.23139 1.87706 1.21485 0.87218 0.85238 0.91286 1.67925 1.41606 0.99625 1.20607 1.23560 0.91592 0.94995 0.88072 1.22935 0.96631 1.00336 1.05621 1.21471 0.94997 0.88279 0.90945 1.18550 0.85865 0.84665 0.78934 1.90560 1.71396 1.30994 1.57667 1.43214 1.04480 1.05348 1.60072 1.18733 1.26815 0.93394 1.07393 0.90853 1.25653 0.94688 0.98203 0.92528 1.69933 1.37254 1.38460 1.07797 0.85417 0.77827 0.79027 0.78503 1.21811 1.21617 1.18931 1.22230 0.81371 0.98691 0.96053 1.22728 0.96732 0.99219 0.97204 1.22249 0.95419 1.02554 0.94434 1.22029 0.95918 0.99914 0.97044 1.22237 0.97970 0.99173 0.96344 1.69006 1.05657 1.28514 1.14123 0.85886 0.92195 0.90945 0.76039 0.81982 0.93271 0.91503 0.92004 0.91368 0.90600 0.89797 0.91800 0.90603 0.92495 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.09 10.36 113.37 1.17 2.27 16 2 O -0.32 -12.84 7.80 -87.69 -0.68 -13.52 16 3 C 0.45 19.59 8.22 180.61 1.49 21.07 16 4 N -0.57 -20.79 9.20 -313.47 -2.89 -23.67 16 5 C 0.18 5.83 11.30 84.76 0.96 6.79 16 6 C -0.23 -9.03 9.71 22.72 0.22 -8.81 16 7 C 0.19 9.27 5.93 41.93 0.25 9.52 16 8 C 0.53 28.19 7.21 86.90 0.63 28.82 16 9 O -0.62 -33.79 15.82 -3.86 -0.06 -33.85 16 10 N -0.42 -21.29 2.34 -609.82 -1.43 -22.72 16 11 C -0.34 -17.50 5.98 84.16 0.50 -17.00 16 12 H 0.07 3.85 7.04 -2.91 -0.02 3.83 16 13 C 0.10 5.01 2.75 85.00 0.23 5.25 16 14 N -0.90 -49.69 12.20 21.70 0.26 -49.43 16 15 Si 0.96 45.26 25.88 68.60 1.78 47.03 16 16 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 17 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 18 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 19 C 0.12 5.33 3.25 46.19 0.15 5.48 16 20 C -0.12 -4.41 6.41 32.01 0.21 -4.21 16 21 C -0.11 -3.10 6.82 31.67 0.22 -2.88 16 22 C -0.11 -3.48 6.80 31.32 0.21 -3.27 16 23 C -0.12 -4.98 6.43 31.32 0.20 -4.78 16 24 N -0.45 -21.96 4.56 -302.74 -1.38 -23.34 16 25 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.06 1.62 8.09 -2.39 -0.02 1.60 16 27 H 0.07 1.79 8.09 -2.39 -0.02 1.78 16 28 H 0.22 4.34 8.06 -2.91 -0.02 4.31 16 29 H 0.16 5.78 7.75 -2.91 -0.02 5.75 16 30 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 31 H 0.07 3.12 6.99 -2.39 -0.02 3.10 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.07 2.68 6.58 -2.38 -0.02 2.66 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.06 2.78 7.09 -2.38 -0.02 2.76 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -68.19 315.26 3.10 -65.10 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 1.06 Total: 16.16 kcal Atomic # 6 Polarization: 31.81 SS G_CDS: 6.43 Total: 38.25 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -5.43 Total: -119.16 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -0.75 Total: -47.38 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.78 Total: 47.03 kcal Total: -68.19 3.10 -65.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933247340.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.833 kcal (2) G-P(sol) polarization free energy of solvation -68.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds