Wall clock time and date at job start Tue Mar 31 2020 06:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 119.99998 * 2 1 4 4 O 1.21580 * 120.00073 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99865 * 179.97438 * 3 2 1 6 6 C 1.39432 * 119.99855 * 185.31538 * 5 3 2 7 7 C 1.39139 * 119.92665 * 33.69075 * 6 5 3 8 8 C 1.37660 * 120.07482 * 180.23312 * 7 6 5 9 9 C 1.39748 * 119.92502 * 359.46874 * 8 7 6 10 10 C 1.47582 * 120.07377 * 180.30013 * 9 8 7 11 11 O 1.21585 * 120.00226 * 0.02562 * 10 9 8 12 12 N 1.34786 * 120.00052 * 179.97438 * 10 9 8 13 13 C 1.46494 * 119.99967 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47227 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.47347 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99986 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00035 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99961 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00085 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47255 * 59.99693 * 19 17 15 21 21 H 1.48496 * 109.46903 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46802 * 299.99660 * 19 17 15 23 23 C 1.39762 * 119.85344 * 0.27416 * 9 8 7 24 24 C 1.37656 * 119.92262 * 0.02562 * 23 9 8 25 25 H 1.09000 * 109.46931 * 60.00165 * 1 2 3 26 26 H 1.08999 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47552 * 299.99882 * 1 2 3 28 28 H 0.97003 * 119.99748 * 179.97438 * 2 1 3 29 29 H 0.97000 * 120.00172 * 5.32307 * 5 3 2 30 30 H 1.08005 * 119.96135 * 0.02562 * 7 6 5 31 31 H 1.07998 * 120.03781 * 179.74757 * 8 7 6 32 32 H 0.96998 * 119.99780 * 359.97438 * 12 10 9 33 33 H 1.09002 * 109.46799 * 299.99657 * 13 12 10 34 34 H 1.08997 * 109.47498 * 59.99488 * 13 12 10 35 35 H 1.09002 * 109.46351 * 299.99789 * 14 13 12 36 36 H 1.09002 * 109.46676 * 59.99598 * 14 13 12 37 37 H 0.97000 * 120.00082 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.04009 * 180.02562 * 23 9 8 39 39 H 1.08001 * 119.96285 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4866 1.1672 0.0005 6 6 4.1837 2.3695 0.1124 7 6 3.6616 3.4058 0.8801 8 6 4.3449 4.5959 0.9888 9 6 5.5698 4.7586 0.3359 10 6 6.3084 6.0307 0.4556 11 8 5.8515 6.9384 1.1231 12 7 7.4898 6.1858 -0.1743 13 6 8.2232 7.4484 -0.0551 14 6 9.5214 7.3621 -0.8603 15 6 10.2755 8.6611 -0.7382 16 1 9.8693 9.4677 -0.1458 17 6 11.4840 8.8198 -1.3825 18 7 11.9789 7.8374 -2.1034 19 14 12.4192 10.4298 -1.2306 20 1 12.7378 10.6843 0.1972 21 1 13.6796 10.3456 -2.0112 22 1 11.5837 11.5390 -1.7567 23 6 6.0940 3.7137 -0.4301 24 6 5.4025 2.5285 -0.5396 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.9499 -0.8401 0.0004 29 1 3.9716 0.3307 -0.0770 30 1 2.7174 3.2775 1.3887 31 1 3.9371 5.4012 1.5816 32 1 7.8548 5.4612 -0.7059 33 1 7.6100 8.2626 -0.4413 34 1 8.4570 7.6352 0.9930 35 1 10.1347 6.5478 -0.4744 36 1 9.2871 7.1755 -1.9083 37 1 12.8289 7.9492 -2.5571 38 1 7.0406 3.8361 -0.9356 39 1 5.8069 1.7208 -1.1317 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935340496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:59 Heat of formation + Delta-G solvation = -42.498027 kcal Electronic energy + Delta-G solvation = -21599.029219 eV Core-core repulsion = 18120.490062 eV Total energy + Delta-G solvation = -3478.539157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02528 -39.67637 -38.13006 -35.18377 -34.98401 -34.84851 -32.86670 -31.11739 -30.51385 -29.13709 -27.02786 -24.92393 -23.49776 -22.80439 -21.37501 -20.98475 -20.14122 -19.09209 -18.17126 -17.39265 -16.40817 -16.09897 -15.58514 -15.50463 -14.96370 -14.84797 -14.62907 -14.39733 -14.31211 -13.73756 -13.49148 -13.29924 -13.19752 -12.73097 -12.59909 -12.48078 -12.25727 -11.38563 -11.17685 -11.00830 -10.73672 -10.64526 -10.43874 -10.29050 -9.82134 -9.66324 -9.45964 -9.20506 -9.07808 -8.55857 -8.38943 -8.18774 -6.07832 -4.10488 0.80325 1.31597 2.15152 2.62781 3.16935 3.32845 3.36341 3.39580 3.68138 3.71917 3.98602 4.43497 4.66353 4.73150 4.80840 5.04444 5.06556 5.24784 5.25590 5.29169 5.36770 5.40140 5.85014 5.90339 5.94983 6.03511 6.28160 6.31201 6.38096 6.45610 6.48853 6.76570 6.82169 6.94552 7.40429 7.53303 7.63404 7.90422 8.04138 8.05187 8.29698 8.67592 8.95200 9.54157 11.03738 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.048373 B = 0.002294 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.694098 B =12201.859520 C =12649.135801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.746 5.746 3 C 0.700 3.300 4 O -0.566 6.566 5 N -0.684 5.684 6 C 0.182 3.818 7 C -0.131 4.131 8 C -0.041 4.041 9 C -0.144 4.144 10 C 0.549 3.451 11 O -0.549 6.549 12 N -0.717 5.717 13 C 0.121 3.879 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.064 4.064 24 C -0.155 4.155 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.399 0.601 29 H 0.408 0.592 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.396 0.604 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.262 0.738 38 H 0.134 0.866 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.676 -22.044 3.078 29.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.402 5.402 3 C 0.400 3.600 4 O -0.441 6.441 5 N -0.331 5.331 6 C 0.086 3.914 7 C -0.151 4.151 8 C -0.060 4.060 9 C -0.148 4.148 10 C 0.336 3.664 11 O -0.428 6.428 12 N -0.367 5.367 13 C -0.001 4.001 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.084 4.084 24 C -0.176 4.176 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.232 0.768 29 H 0.243 0.757 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.231 0.769 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.152 0.848 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.471 -20.493 3.446 28.478 hybrid contribution 1.256 -0.477 -0.406 1.403 sum -18.215 -20.970 3.039 27.942 Atomic orbital electron populations 1.21460 0.77525 1.02282 1.02668 1.44920 1.08095 1.06918 1.80248 1.15959 0.81364 0.84680 0.77977 1.90996 1.67374 1.29944 1.55819 1.42493 1.05107 1.08830 1.76704 1.17617 0.92121 0.86093 0.95564 1.21089 1.01376 0.93068 0.99564 1.21159 0.92244 0.96746 0.95886 1.20121 0.97130 0.95011 1.02517 1.18205 0.81347 0.86950 0.79918 1.90745 1.68357 1.42497 1.41204 1.46264 1.20957 1.18792 1.50677 1.21755 0.94157 0.83129 1.01075 1.19329 0.89880 0.98183 0.95121 1.21018 1.04708 0.99385 1.30900 0.92259 1.24996 0.97407 0.96857 0.95048 1.69946 1.19664 1.31797 1.31942 0.86562 0.79002 0.83670 0.78241 1.20119 1.21269 1.20109 1.21154 0.99175 0.91812 0.96244 1.20730 0.95861 0.98986 1.02011 0.92064 0.90392 0.92051 0.76752 0.75688 0.84329 0.84324 0.76908 0.92398 0.92392 0.95910 0.95908 0.92815 0.84827 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.48 10.70 59.85 0.64 1.12 16 2 N -0.75 -3.97 5.72 -72.08 -0.41 -4.38 16 3 C 0.70 6.59 8.29 -86.92 -0.72 5.87 16 4 O -0.57 -7.88 14.03 5.30 0.07 -7.81 16 5 N -0.68 -5.27 5.32 -14.22 -0.08 -5.34 16 6 C 0.18 1.95 6.27 -83.74 -0.53 1.42 16 7 C -0.13 -1.66 8.62 -39.46 -0.34 -2.01 16 8 C -0.04 -0.58 9.58 -39.23 -0.38 -0.95 16 9 C -0.14 -2.13 5.88 -104.95 -0.62 -2.75 16 10 C 0.55 10.11 7.76 -12.44 -0.10 10.01 16 11 O -0.55 -12.01 16.34 5.29 0.09 -11.92 16 12 N -0.72 -13.07 5.51 -61.33 -0.34 -13.40 16 13 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 15 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 16 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 19 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.06 -0.76 9.53 -39.22 -0.37 -1.14 16 24 C -0.16 -1.53 9.94 -39.46 -0.39 -1.93 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.40 0.74 8.85 -40.82 -0.36 0.38 16 29 H 0.41 1.55 8.83 -40.82 -0.36 1.19 16 30 H 0.14 1.81 6.42 -52.48 -0.34 1.48 16 31 H 0.14 2.00 7.64 -52.49 -0.40 1.60 16 32 H 0.40 6.16 6.49 -40.82 -0.27 5.90 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.13 1.36 6.39 -52.49 -0.34 1.03 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -36.17 338.63 -8.21 -44.37 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.98 Total: 3.20 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -3.38 Total: -0.89 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.09 Total: -48.54 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.16 Total: -19.73 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.17 -8.21 -44.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935340496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.875 kcal (2) G-P(sol) polarization free energy of solvation -36.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds