Wall clock time and date at job start Tue Mar 31 2020 06:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 119.99998 * 2 1 4 4 O 1.21580 * 120.00073 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99865 * 179.97438 * 3 2 1 6 6 C 1.39432 * 119.99855 * 185.31538 * 5 3 2 7 7 C 1.39139 * 119.92665 * 33.69075 * 6 5 3 8 8 C 1.37660 * 120.07482 * 180.23312 * 7 6 5 9 9 C 1.39748 * 119.92502 * 359.46874 * 8 7 6 10 10 C 1.47582 * 120.07377 * 180.30013 * 9 8 7 11 11 O 1.21585 * 120.00226 * 0.02562 * 10 9 8 12 12 N 1.34786 * 120.00052 * 179.97438 * 10 9 8 13 13 C 1.46494 * 119.99967 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47227 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.47347 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99986 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00035 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99961 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00085 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47255 * 59.99693 * 19 17 15 21 21 H 1.48496 * 109.46903 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46802 * 299.99660 * 19 17 15 23 23 C 1.39762 * 119.85344 * 0.27416 * 9 8 7 24 24 C 1.37656 * 119.92262 * 0.02562 * 23 9 8 25 25 H 1.09000 * 109.46931 * 60.00165 * 1 2 3 26 26 H 1.08999 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47552 * 299.99882 * 1 2 3 28 28 H 0.97003 * 119.99748 * 179.97438 * 2 1 3 29 29 H 0.97000 * 120.00172 * 5.32307 * 5 3 2 30 30 H 1.08005 * 119.96135 * 0.02562 * 7 6 5 31 31 H 1.07998 * 120.03781 * 179.74757 * 8 7 6 32 32 H 0.96998 * 119.99780 * 359.97438 * 12 10 9 33 33 H 1.09002 * 109.46799 * 299.99657 * 13 12 10 34 34 H 1.08997 * 109.47498 * 59.99488 * 13 12 10 35 35 H 1.09002 * 109.46351 * 299.99789 * 14 13 12 36 36 H 1.09002 * 109.46676 * 59.99598 * 14 13 12 37 37 H 0.97000 * 120.00082 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.04009 * 180.02562 * 23 9 8 39 39 H 1.08001 * 119.96285 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4866 1.1672 0.0005 6 6 4.1837 2.3695 0.1124 7 6 3.6616 3.4058 0.8801 8 6 4.3449 4.5959 0.9888 9 6 5.5698 4.7586 0.3359 10 6 6.3084 6.0307 0.4556 11 8 5.8515 6.9384 1.1231 12 7 7.4898 6.1858 -0.1743 13 6 8.2232 7.4484 -0.0551 14 6 9.5214 7.3621 -0.8603 15 6 10.2755 8.6611 -0.7382 16 1 9.8693 9.4677 -0.1458 17 6 11.4840 8.8198 -1.3825 18 7 11.9789 7.8374 -2.1034 19 14 12.4192 10.4298 -1.2306 20 1 12.7378 10.6843 0.1972 21 1 13.6796 10.3456 -2.0112 22 1 11.5837 11.5390 -1.7567 23 6 6.0940 3.7137 -0.4301 24 6 5.4025 2.5285 -0.5396 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.9499 -0.8401 0.0004 29 1 3.9716 0.3307 -0.0770 30 1 2.7174 3.2775 1.3887 31 1 3.9371 5.4012 1.5816 32 1 7.8548 5.4612 -0.7059 33 1 7.6100 8.2626 -0.4413 34 1 8.4570 7.6352 0.9930 35 1 10.1347 6.5478 -0.4744 36 1 9.2871 7.1755 -1.9083 37 1 12.8289 7.9492 -2.5571 38 1 7.0406 3.8361 -0.9356 39 1 5.8069 1.7208 -1.1317 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935340496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:59 Heat of formation + Delta-G solvation = -70.131129 kcal Electronic energy + Delta-G solvation = -21600.227480 eV Core-core repulsion = 18120.490062 eV Total energy + Delta-G solvation = -3479.737418 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.84268 -40.92969 -39.23428 -36.64220 -35.93298 -35.71350 -34.84139 -32.28021 -31.78126 -30.56503 -27.70022 -26.70195 -24.55188 -23.93314 -22.77869 -22.17987 -21.42861 -19.78196 -19.14125 -18.66055 -18.35031 -17.06797 -16.70495 -16.48941 -16.46849 -16.24397 -15.74816 -15.68170 -15.23320 -14.91508 -14.79831 -14.42210 -14.28678 -14.11037 -13.67314 -13.56600 -13.21257 -13.04537 -12.92418 -12.54870 -12.32926 -12.22782 -11.68636 -11.62721 -11.47948 -11.32705 -10.94270 -10.58977 -10.23841 -10.07295 -10.02945 -9.15082 -8.22919 -6.33053 -0.24531 0.37520 1.42671 1.44927 1.50600 1.52842 1.71410 2.09440 2.22242 2.45753 2.87620 3.11654 3.18196 3.77289 3.81983 3.93517 4.28600 4.34294 4.46396 4.48773 4.49381 4.52501 4.66137 4.85185 4.96530 5.00147 5.07670 5.16844 5.25193 5.33347 5.34831 5.44782 5.49683 5.59176 5.79263 5.86670 5.92348 6.17185 6.60040 6.79270 6.92400 7.22216 7.35795 7.40556 8.88619 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.048373 B = 0.002294 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.694098 B =12201.859520 C =12649.135801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.727 5.727 3 C 0.692 3.308 4 O -0.616 6.616 5 N -0.668 5.668 6 C 0.193 3.807 7 C -0.141 4.141 8 C -0.051 4.051 9 C -0.168 4.168 10 C 0.549 3.451 11 O -0.592 6.592 12 N -0.710 5.710 13 C 0.139 3.861 14 C 0.023 3.977 15 C -0.548 4.548 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.924 5.924 19 Si 0.965 3.035 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.270 1.270 23 C -0.058 4.058 24 C -0.140 4.140 25 H 0.047 0.953 26 H 0.117 0.883 27 H 0.048 0.952 28 H 0.420 0.580 29 H 0.430 0.570 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.411 0.589 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.012 0.988 36 H 0.011 0.989 37 H 0.266 0.734 38 H 0.152 0.848 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.476 -24.529 2.347 30.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.383 5.383 3 C 0.393 3.607 4 O -0.495 6.495 5 N -0.317 5.317 6 C 0.096 3.904 7 C -0.162 4.162 8 C -0.071 4.071 9 C -0.172 4.172 10 C 0.339 3.661 11 O -0.475 6.475 12 N -0.361 5.361 13 C 0.015 3.985 14 C -0.014 4.014 15 C -0.587 4.587 16 H 0.076 0.924 17 C -0.191 4.191 18 N -0.564 5.564 19 Si 0.789 3.211 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.195 1.195 23 C -0.077 4.077 24 C -0.161 4.161 25 H 0.066 0.934 26 H 0.135 0.865 27 H 0.066 0.934 28 H 0.257 0.743 29 H 0.270 0.730 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.248 0.752 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.170 0.830 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -19.264 -23.092 2.702 30.193 hybrid contribution 1.088 0.138 -0.190 1.113 sum -18.176 -22.954 2.513 29.387 Atomic orbital electron populations 1.21604 0.76883 1.04446 1.01393 1.44821 1.08462 1.06568 1.78441 1.16249 0.81697 0.85034 0.77753 1.90977 1.68428 1.32079 1.58041 1.42313 1.04696 1.08850 1.75821 1.17735 0.92279 0.86406 0.94025 1.21033 1.01147 0.93404 1.00570 1.21064 0.92548 0.97155 0.96312 1.19837 0.97559 0.94335 1.05420 1.18749 0.80912 0.87802 0.78655 1.90712 1.69320 1.44346 1.43079 1.46028 1.20931 1.18015 1.51114 1.21284 0.92939 0.84542 0.99696 1.19136 0.90786 0.96823 0.94653 1.21433 1.05555 1.00505 1.31195 0.92407 1.25852 0.98288 1.00409 0.94557 1.70043 1.20158 1.33665 1.32512 0.85507 0.77713 0.79357 0.78519 1.19416 1.20475 1.19491 1.21380 0.99764 0.91491 0.95065 1.21083 0.94770 0.99149 1.01075 0.93409 0.86466 0.93356 0.74343 0.72998 0.85164 0.85921 0.75207 0.93562 0.93378 0.96957 0.97101 0.92511 0.83007 0.80877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 10.70 127.77 1.37 2.10 16 2 N -0.73 -5.84 5.72 -500.22 -2.86 -8.70 16 3 C 0.69 11.78 8.29 179.06 1.48 13.26 16 4 O -0.62 -17.03 14.03 -3.97 -0.06 -17.08 16 5 N -0.67 -8.31 5.32 -317.17 -1.69 -10.00 16 6 C 0.19 3.70 6.27 38.36 0.24 3.94 16 7 C -0.14 -3.59 8.62 22.35 0.19 -3.40 16 8 C -0.05 -1.50 9.58 22.50 0.22 -1.29 16 9 C -0.17 -4.98 5.88 -20.08 -0.12 -5.10 16 10 C 0.55 20.76 7.76 86.71 0.67 21.43 16 11 O -0.59 -27.13 16.34 -3.98 -0.07 -27.20 16 12 N -0.71 -26.14 5.51 -466.22 -2.57 -28.71 16 13 C 0.14 6.20 5.61 86.38 0.48 6.68 16 14 C 0.02 1.19 5.09 29.85 0.15 1.35 16 15 C -0.55 -30.94 9.11 25.60 0.23 -30.71 16 16 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 17 C 0.01 0.44 5.46 84.65 0.46 0.91 16 18 N -0.92 -54.02 13.29 21.45 0.28 -53.73 16 19 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 C -0.06 -1.24 9.53 22.50 0.21 -1.03 16 24 C -0.14 -2.28 9.94 22.35 0.22 -2.05 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.42 -0.01 8.85 -92.71 -0.82 -0.83 16 29 H 0.43 1.44 8.83 -92.71 -0.82 0.62 16 30 H 0.13 3.53 6.42 -2.91 -0.02 3.52 16 31 H 0.12 3.87 7.64 -2.91 -0.02 3.85 16 32 H 0.41 12.54 6.49 -92.71 -0.60 11.94 16 33 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.15 2.67 6.39 -2.91 -0.02 2.65 16 39 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -80.70 338.63 -0.23 -80.93 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -1.13 Total: 12.48 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 5.82 Total: 6.09 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -6.83 Total: -101.14 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -0.12 Total: -44.28 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -80.70 -0.23 -80.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935340496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.801 kcal (2) G-P(sol) polarization free energy of solvation -80.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds