Wall clock time and date at job start Tue Mar 31 2020 07:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00041 * 2 1 4 4 H 1.48502 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47163 * 300.00244 * 3 2 1 6 6 H 1.48496 * 109.47223 * 60.00535 * 3 2 1 7 7 C 1.38821 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99647 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.47365 * 125.58065 * 0.02562 * 9 7 2 11 11 C 1.54858 * 104.82211 * 204.66888 * 10 9 7 12 12 C 1.54915 * 101.76866 * 322.93283 * 11 10 9 13 13 N 1.46501 * 112.32999 * 273.78263 * 12 11 10 14 14 C 1.34771 * 120.00404 * 295.64096 * 13 12 11 15 15 O 1.21556 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.47873 * 120.00265 * 180.02562 * 14 13 12 17 17 N 1.34548 * 126.04733 * 359.68038 * 16 14 13 18 18 C 1.30874 * 107.27021 * 179.89820 * 17 16 14 19 19 N 1.34581 * 107.62221 * 0.36847 * 18 17 16 20 20 H 0.97001 * 125.75045 * 179.79224 * 19 18 17 21 21 N 1.28852 * 108.50539 * 359.77040 * 19 18 17 22 22 C 1.53586 * 109.09116 * 148.11616 * 12 11 10 23 23 C 1.54402 * 106.75093 * 247.06032 * 22 12 11 24 24 C 1.54761 * 104.07426 * 24.70175 * 23 22 12 25 25 C 1.46977 * 125.57702 * 179.97438 * 9 7 2 26 26 H 1.08998 * 111.81485 * 301.92107 * 25 9 7 27 27 H 0.97003 * 120.00066 * 359.97438 * 1 2 3 28 28 H 1.08995 * 110.37426 * 323.51020 * 10 9 7 29 29 H 1.09009 * 110.36528 * 85.83535 * 10 9 7 30 30 H 1.08997 * 110.97182 * 81.05011 * 11 10 9 31 31 H 1.09000 * 110.97176 * 204.77829 * 11 10 9 32 32 H 0.97009 * 119.99599 * 115.64063 * 13 12 11 33 33 H 1.08001 * 126.18846 * 180.13409 * 18 17 16 34 34 H 1.08994 * 110.01917 * 6.22401 * 22 12 11 35 35 H 1.09000 * 110.01627 * 127.57375 * 22 12 11 36 36 H 1.09003 * 110.41899 * 266.11438 * 23 22 12 37 37 H 1.09004 * 110.64966 * 143.39971 * 23 22 12 38 38 H 1.09002 * 110.67220 * 203.89107 * 24 23 22 39 39 H 1.09001 * 110.66738 * 80.92326 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1412 -2.5314 -0.0005 11 6 -0.4032 -3.9238 0.6243 12 6 0.7720 -4.7540 0.0503 13 7 0.4651 -5.3163 -1.2672 14 6 -0.5202 -6.2264 -1.3986 15 8 -1.1545 -6.5804 -0.4240 16 6 -0.8296 -6.7944 -2.7284 17 7 -0.2124 -6.4871 -3.8837 18 6 -0.7734 -7.2014 -4.8259 19 7 -1.7406 -7.9423 -4.2543 20 1 -2.3241 -8.5654 -4.7149 21 7 -1.7607 -7.6849 -2.9919 22 6 1.1755 -5.8269 1.0725 23 6 2.5895 -5.4575 1.5707 24 6 2.6838 -3.9305 1.3371 25 6 1.9331 -3.7264 -0.0016 26 1 2.5871 -3.8736 -0.8611 27 1 -0.4850 0.8401 0.0004 28 1 -0.5987 -1.7507 0.6071 29 1 -0.5260 -2.4944 -1.0198 30 1 -0.3541 -3.8788 1.7122 31 1 -1.3619 -4.3249 0.2954 32 1 0.9711 -5.0335 -2.0451 33 1 -0.5105 -7.1946 -5.8734 34 1 0.4765 -5.8272 1.9087 35 1 1.1895 -6.8080 0.5977 36 1 3.3471 -5.9804 0.9870 37 1 2.6962 -5.6887 2.6306 38 1 3.7243 -3.6188 1.2460 39 1 2.1898 -3.3869 2.1423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992336475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:47 Heat of formation + Delta-G solvation = 85.851701 kcal Electronic energy + Delta-G solvation = -23914.199881 eV Core-core repulsion = 20473.519138 eV Total energy + Delta-G solvation = -3440.680744 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.57994 -40.03990 -37.94042 -34.22750 -33.89116 -33.10475 -31.55701 -31.30961 -29.70793 -26.67043 -26.34258 -24.27365 -23.76481 -23.04661 -21.07873 -19.93453 -19.73688 -18.92054 -18.69261 -17.04438 -16.83183 -16.43234 -15.72823 -15.28970 -14.89586 -14.44177 -14.16693 -13.86359 -13.45461 -13.10825 -12.75481 -12.31823 -12.13989 -11.78138 -11.63292 -11.12314 -10.94988 -10.86434 -10.80792 -10.65309 -10.62699 -10.47030 -10.15817 -10.04628 -9.92691 -9.85197 -9.78333 -9.60039 -9.45391 -8.61389 -8.50851 -6.80157 -5.59893 -3.02830 1.32442 2.02618 2.39997 3.24962 3.42463 3.47887 3.50419 3.52101 4.05180 4.51038 4.55175 4.72260 4.99811 5.21326 5.37811 5.56909 5.70520 5.81743 5.88557 5.91253 6.05118 6.08762 6.14995 6.20538 6.31100 6.42175 6.47408 6.50627 6.59783 6.65588 6.83021 6.84632 7.03240 7.16245 7.60687 7.67679 7.70363 7.92250 7.97943 8.41461 8.45890 9.26257 9.87303 10.51670 11.42819 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019033 B = 0.004767 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.782045 B = 5872.406817 C = 6643.167309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.152 3.848 11 C -0.143 4.143 12 C 0.162 3.838 13 N -0.681 5.681 14 C 0.611 3.389 15 O -0.517 6.517 16 C 0.155 3.845 17 N -0.482 5.482 18 C 0.195 3.805 19 N -0.405 5.405 20 H 0.451 0.549 21 N -0.253 5.253 22 C -0.111 4.111 23 C -0.124 4.124 24 C -0.129 4.129 25 C 0.162 3.838 26 H 0.049 0.951 27 H 0.251 0.749 28 H 0.108 0.892 29 H 0.010 0.990 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.409 0.591 33 H 0.229 0.771 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 -15.893 -8.146 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.027 3.973 11 C -0.182 4.182 12 C 0.076 3.924 13 N -0.331 5.331 14 C 0.392 3.608 15 O -0.389 6.389 16 C -0.126 4.126 17 N -0.208 5.208 18 C -0.103 4.103 19 N -0.127 5.127 20 H 0.297 0.703 21 N -0.092 5.092 22 C -0.150 4.150 23 C -0.162 4.162 24 C -0.169 4.169 25 C 0.054 3.946 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.126 0.874 29 H 0.028 0.972 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.245 0.755 33 H 0.245 0.755 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.785 -15.798 -6.879 17.248 hybrid contribution 0.284 0.513 -1.328 1.452 sum -0.502 -15.284 -8.207 17.355 Atomic orbital electron populations 1.69816 1.04879 1.24532 1.57667 1.24775 0.95651 0.97635 1.02554 0.86030 0.78654 0.83828 0.77171 1.20551 1.21900 1.21835 1.19090 0.90483 0.82279 1.42774 0.90414 1.44536 1.01809 0.99191 1.86427 1.21979 0.84381 0.92892 0.98013 1.23358 0.96599 0.98095 1.00167 1.21709 0.97086 0.92477 0.81143 1.45605 1.34987 1.41053 1.11483 1.16247 0.80851 0.79667 0.84022 1.90817 1.50157 1.60460 1.37501 1.24047 0.94899 0.98300 0.95382 1.71346 1.27363 1.23750 0.98340 1.26619 0.89955 0.92250 1.01472 1.45260 1.28413 1.33618 1.05445 0.70287 1.74372 1.21162 1.17141 0.96559 1.22301 0.96859 0.97608 0.98242 1.22395 0.96308 0.97357 1.00184 1.22962 1.00402 0.93944 0.99627 1.21808 0.91514 0.85759 0.95535 0.93310 0.93852 0.87394 0.97228 0.91117 0.91554 0.75459 0.75455 0.90955 0.92220 0.92320 0.92147 0.92312 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.07 55.49 0.56 -26.32 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 7 C -0.22 -5.92 10.01 -15.06 -0.15 -6.07 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.85 3.03 -161.10 -0.49 -15.33 16 10 C 0.15 3.79 5.90 -2.59 -0.02 3.78 16 11 C -0.14 -3.01 5.75 -24.74 -0.14 -3.16 16 12 C 0.16 3.04 0.74 -129.37 -0.10 2.95 16 13 N -0.68 -12.02 5.24 -46.27 -0.24 -12.26 16 14 C 0.61 11.05 7.00 -12.32 -0.09 10.96 16 15 O -0.52 -10.55 14.96 5.32 0.08 -10.47 16 16 C 0.15 2.43 7.96 -156.36 -1.24 1.18 16 17 N -0.48 -6.38 11.09 -12.36 -0.14 -6.52 16 18 C 0.20 1.57 13.14 -90.48 -1.19 0.38 16 19 N -0.40 -3.29 6.93 29.56 0.20 -3.09 16 20 H 0.45 1.48 8.96 -190.21 -1.71 -0.22 16 21 N -0.25 -3.51 12.30 32.07 0.39 -3.12 16 22 C -0.11 -1.87 5.24 -25.69 -0.13 -2.01 16 23 C -0.12 -1.90 6.85 -25.07 -0.17 -2.07 16 24 C -0.13 -2.36 6.20 -24.84 -0.15 -2.52 16 25 C 0.16 3.30 3.65 -65.57 -0.24 3.06 16 26 H 0.05 0.99 8.02 -51.93 -0.42 0.57 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.11 3.03 5.83 -51.93 -0.30 2.73 16 29 H 0.01 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.07 1.46 7.62 -51.93 -0.40 1.07 16 31 H 0.07 1.43 6.82 -51.93 -0.35 1.07 16 32 H 0.41 6.89 8.23 -40.82 -0.34 6.55 16 33 H 0.23 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.07 1.24 7.37 -51.93 -0.38 0.86 16 35 H 0.06 1.00 7.43 -51.93 -0.39 0.61 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 LS Contribution 317.57 15.07 4.79 4.79 Total: -1.00 -34.72 317.57 -9.94 -44.66 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.36 Total: 4.59 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -3.72 Total: 6.10 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: 0.29 Total: -66.63 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.72 -9.94 -44.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992336475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.512 kcal (2) G-P(sol) polarization free energy of solvation -34.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds