Wall clock time and date at job start Tue Mar 31 2020 07:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00041 * 2 1 4 4 H 1.48502 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47163 * 300.00244 * 3 2 1 6 6 H 1.48496 * 109.47223 * 60.00535 * 3 2 1 7 7 C 1.38821 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99647 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.47365 * 125.58065 * 0.02562 * 9 7 2 11 11 C 1.54858 * 104.82211 * 204.66888 * 10 9 7 12 12 C 1.54915 * 101.76866 * 322.93283 * 11 10 9 13 13 N 1.46501 * 112.32999 * 273.78263 * 12 11 10 14 14 C 1.34771 * 120.00404 * 295.64096 * 13 12 11 15 15 O 1.21556 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.47873 * 120.00265 * 180.02562 * 14 13 12 17 17 N 1.34548 * 126.04733 * 359.68038 * 16 14 13 18 18 C 1.30874 * 107.27021 * 179.89820 * 17 16 14 19 19 N 1.34581 * 107.62221 * 0.36847 * 18 17 16 20 20 H 0.97001 * 125.75045 * 179.79224 * 19 18 17 21 21 N 1.28852 * 108.50539 * 359.77040 * 19 18 17 22 22 C 1.53586 * 109.09116 * 148.11616 * 12 11 10 23 23 C 1.54402 * 106.75093 * 247.06032 * 22 12 11 24 24 C 1.54761 * 104.07426 * 24.70175 * 23 22 12 25 25 C 1.46977 * 125.57702 * 179.97438 * 9 7 2 26 26 H 1.08998 * 111.81485 * 301.92107 * 25 9 7 27 27 H 0.97003 * 120.00066 * 359.97438 * 1 2 3 28 28 H 1.08995 * 110.37426 * 323.51020 * 10 9 7 29 29 H 1.09009 * 110.36528 * 85.83535 * 10 9 7 30 30 H 1.08997 * 110.97182 * 81.05011 * 11 10 9 31 31 H 1.09000 * 110.97176 * 204.77829 * 11 10 9 32 32 H 0.97009 * 119.99599 * 115.64063 * 13 12 11 33 33 H 1.08001 * 126.18846 * 180.13409 * 18 17 16 34 34 H 1.08994 * 110.01917 * 6.22401 * 22 12 11 35 35 H 1.09000 * 110.01627 * 127.57375 * 22 12 11 36 36 H 1.09003 * 110.41899 * 266.11438 * 23 22 12 37 37 H 1.09004 * 110.64966 * 143.39971 * 23 22 12 38 38 H 1.09002 * 110.67220 * 203.89107 * 24 23 22 39 39 H 1.09001 * 110.66738 * 80.92326 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1412 -2.5314 -0.0005 11 6 -0.4032 -3.9238 0.6243 12 6 0.7720 -4.7540 0.0503 13 7 0.4651 -5.3163 -1.2672 14 6 -0.5202 -6.2264 -1.3986 15 8 -1.1545 -6.5804 -0.4240 16 6 -0.8296 -6.7944 -2.7284 17 7 -0.2124 -6.4871 -3.8837 18 6 -0.7734 -7.2014 -4.8259 19 7 -1.7406 -7.9423 -4.2543 20 1 -2.3241 -8.5654 -4.7149 21 7 -1.7607 -7.6849 -2.9919 22 6 1.1755 -5.8269 1.0725 23 6 2.5895 -5.4575 1.5707 24 6 2.6838 -3.9305 1.3371 25 6 1.9331 -3.7264 -0.0016 26 1 2.5871 -3.8736 -0.8611 27 1 -0.4850 0.8401 0.0004 28 1 -0.5987 -1.7507 0.6071 29 1 -0.5260 -2.4944 -1.0198 30 1 -0.3541 -3.8788 1.7122 31 1 -1.3619 -4.3249 0.2954 32 1 0.9711 -5.0335 -2.0451 33 1 -0.5105 -7.1946 -5.8734 34 1 0.4765 -5.8272 1.9087 35 1 1.1895 -6.8080 0.5977 36 1 3.3471 -5.9804 0.9870 37 1 2.6962 -5.6887 2.6306 38 1 3.7243 -3.6188 1.2460 39 1 2.1898 -3.3869 2.1423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992336475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:46 Heat of formation + Delta-G solvation = 61.179851 kcal Electronic energy + Delta-G solvation = -23915.269733 eV Core-core repulsion = 20473.519138 eV Total energy + Delta-G solvation = -3441.750596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.45611 -41.56267 -39.46269 -36.03641 -35.07502 -34.27936 -33.28322 -32.44369 -31.44019 -28.40164 -27.86891 -25.74408 -25.45343 -23.82937 -22.60036 -21.58158 -21.05319 -20.25146 -19.83860 -18.88441 -18.19383 -17.37355 -17.13952 -16.83438 -16.37095 -15.99494 -15.56495 -15.31778 -15.01428 -14.72895 -14.48002 -13.90845 -13.50423 -13.21078 -13.16910 -12.92059 -12.81140 -12.64927 -12.30851 -11.96685 -11.88580 -11.76865 -11.69573 -11.63559 -11.58616 -11.48811 -11.23464 -11.12251 -10.78975 -10.70862 -10.01706 -8.84328 -7.71059 -5.16026 0.29622 1.16917 1.50089 1.50767 1.54251 1.61143 2.22755 2.28279 2.53578 3.09292 3.37545 3.39891 3.63032 3.65183 3.95010 3.96975 4.05002 4.37240 4.41662 4.48871 4.61002 4.65502 4.81620 4.87158 4.89262 4.96032 5.10931 5.17927 5.24179 5.26768 5.34484 5.49381 5.54319 5.63030 5.67512 5.84327 5.96463 6.33003 6.41533 6.95244 7.12618 7.14473 7.82556 8.47051 9.30933 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019033 B = 0.004767 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.782045 B = 5872.406817 C = 6643.167309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.297 1.297 6 H -0.295 1.295 7 C -0.222 4.222 8 H 0.087 0.913 9 N -0.611 5.611 10 C 0.163 3.837 11 C -0.131 4.131 12 C 0.169 3.831 13 N -0.679 5.679 14 C 0.610 3.390 15 O -0.549 6.549 16 C 0.125 3.875 17 N -0.516 5.516 18 C 0.222 3.778 19 N -0.382 5.382 20 H 0.472 0.528 21 N -0.276 5.276 22 C -0.105 4.105 23 C -0.109 4.109 24 C -0.123 4.123 25 C 0.154 3.846 26 H 0.058 0.942 27 H 0.244 0.756 28 H 0.074 0.926 29 H -0.021 1.021 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.413 0.587 33 H 0.288 0.712 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 -17.698 -9.514 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.223 1.223 7 C -0.351 4.351 8 H 0.105 0.895 9 N -0.335 5.335 10 C 0.038 3.962 11 C -0.170 4.170 12 C 0.083 3.917 13 N -0.329 5.329 14 C 0.393 3.607 15 O -0.424 6.424 16 C -0.155 4.155 17 N -0.243 5.243 18 C -0.075 4.075 19 N -0.108 5.108 20 H 0.324 0.676 21 N -0.117 5.117 22 C -0.144 4.144 23 C -0.147 4.147 24 C -0.163 4.163 25 C 0.048 3.952 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.092 0.908 29 H -0.003 1.003 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.250 0.750 33 H 0.303 0.697 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.876 -17.658 -8.276 19.521 hybrid contribution -0.283 0.998 -1.052 1.478 sum 0.593 -16.660 -9.329 19.103 Atomic orbital electron populations 1.70073 1.06392 1.24646 1.59269 1.25598 0.96441 1.00931 1.03222 0.85003 0.78319 0.79615 0.76375 1.18700 1.22443 1.22259 1.19477 0.91086 0.83210 1.41324 0.89477 1.44724 1.01808 1.00572 1.86375 1.21620 0.84774 0.94066 0.95770 1.23166 0.97476 0.96296 1.00063 1.21592 0.95066 0.92762 0.82299 1.45532 1.35269 1.41025 1.11092 1.16562 0.80083 0.79116 0.84985 1.90779 1.51080 1.61555 1.39005 1.23506 0.96817 1.00089 0.95112 1.71294 1.28819 1.25758 0.98443 1.27661 0.87753 0.89421 1.02654 1.45242 1.28408 1.33322 1.03832 0.67622 1.74250 1.21062 1.17062 0.99357 1.22245 0.97928 0.96904 0.97343 1.22339 0.95540 0.94782 1.01993 1.22814 1.00157 0.96182 0.97173 1.22060 0.92246 0.83861 0.97079 0.92484 0.94642 0.90797 1.00331 0.90856 0.92346 0.75043 0.69725 0.91391 0.91724 0.90061 0.89916 0.91284 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.93 10.07 21.65 0.22 -57.71 16 2 C -0.07 -3.97 5.49 84.87 0.47 -3.51 16 3 Si 0.98 45.81 29.55 68.60 2.03 47.83 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.22 -12.17 10.01 84.04 0.84 -11.33 16 8 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 9 N -0.61 -31.06 3.03 -663.61 -2.01 -33.07 16 10 C 0.16 8.54 5.90 86.85 0.51 9.06 16 11 C -0.13 -5.71 5.75 31.88 0.18 -5.53 16 12 C 0.17 6.37 0.74 5.19 0.00 6.37 16 13 N -0.68 -24.12 5.24 -418.59 -2.19 -26.31 16 14 C 0.61 22.30 7.00 86.80 0.61 22.91 16 15 O -0.55 -22.86 14.96 -3.89 -0.06 -22.92 16 16 C 0.12 3.85 7.96 137.13 1.09 4.94 16 17 N -0.52 -12.81 11.09 -193.03 -2.14 -14.96 16 18 C 0.22 2.80 13.14 180.30 2.37 5.17 16 19 N -0.38 -5.16 6.93 -60.38 -0.42 -5.57 16 20 H 0.47 1.53 8.96 -219.79 -1.97 -0.44 16 21 N -0.28 -7.33 12.30 -52.44 -0.65 -7.98 16 22 C -0.11 -3.41 5.24 31.27 0.16 -3.24 16 23 C -0.11 -3.01 6.85 31.67 0.22 -2.79 16 24 C -0.12 -4.32 6.20 31.82 0.20 -4.12 16 25 C 0.15 6.22 3.65 46.26 0.17 6.39 16 26 H 0.06 2.23 8.02 -2.39 -0.02 2.22 16 27 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.07 4.41 5.83 -2.39 -0.01 4.39 16 29 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 16 30 H 0.07 3.13 7.62 -2.39 -0.02 3.11 16 31 H 0.06 2.63 6.82 -2.39 -0.02 2.61 16 32 H 0.41 13.96 8.23 -92.70 -0.76 13.20 16 33 H 0.29 -0.24 8.06 -2.91 -0.02 -0.26 16 34 H 0.07 2.26 7.37 -2.39 -0.02 2.25 16 35 H 0.06 2.05 7.43 -2.39 -0.02 2.04 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.05 2.09 8.09 -2.39 -0.02 2.07 16 Total: -1.00 -79.34 317.57 -0.03 -79.37 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -1.63 Total: 16.99 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 6.82 Total: 24.33 kcal Atomic # 7 Polarization: -138.41 SS G_CDS: -7.19 Total: -145.60 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.06 Total: -22.92 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -79.34 -0.03 -79.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992336475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.546 kcal (2) G-P(sol) polarization free energy of solvation -79.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds