Wall clock time and date at job start Tue Mar 31 2020 07:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00636 * 2 1 4 4 H 1.48507 * 109.46812 * 0.02562 * 3 2 1 5 5 H 1.48492 * 109.47251 * 119.99872 * 3 2 1 6 6 H 1.48499 * 109.47440 * 240.00545 * 3 2 1 7 7 C 1.38820 * 119.99748 * 180.27500 * 2 1 3 8 8 H 1.07996 * 119.99859 * 208.32145 * 7 2 1 9 9 N 1.36938 * 119.99647 * 28.32310 * 7 2 1 10 10 C 1.47365 * 125.58024 * 19.13720 * 9 7 2 11 11 C 1.55131 * 104.69213 * 155.20648 * 10 9 7 12 12 C 1.54915 * 101.65552 * 37.40255 * 11 10 9 13 13 N 1.46497 * 112.78003 * 86.25376 * 12 11 10 14 14 C 1.34779 * 119.99737 * 64.06997 * 13 12 11 15 15 O 1.21560 * 119.99818 * 359.97438 * 14 13 12 16 16 C 1.47865 * 120.00154 * 179.97438 * 14 13 12 17 17 N 1.34556 * 126.04940 * 179.97438 * 16 14 13 18 18 C 1.30865 * 107.26798 * 180.02562 * 17 16 14 19 19 N 1.34588 * 107.62887 * 0.02562 * 18 17 16 20 20 H 0.96997 * 125.74529 * 180.02562 * 19 18 17 21 21 N 1.28852 * 108.49898 * 359.73050 * 19 18 17 22 22 C 1.53588 * 109.09360 * 211.69718 * 12 11 10 23 23 C 1.54221 * 106.67651 * 113.07742 * 22 12 11 24 24 C 1.55957 * 104.71189 * 335.63605 * 23 22 12 25 25 C 1.46977 * 125.57711 * 199.44580 * 9 7 2 26 26 H 1.09000 * 111.81496 * 59.06458 * 25 9 7 27 27 H 0.97002 * 120.00520 * 185.69647 * 1 2 3 28 28 H 1.08997 * 110.37182 * 274.14352 * 10 9 7 29 29 H 1.09003 * 110.36958 * 36.47843 * 10 9 7 30 30 H 1.09004 * 111.18180 * 279.25632 * 11 10 9 31 31 H 1.08993 * 110.89418 * 155.42869 * 11 10 9 32 32 H 0.96997 * 120.00694 * 244.06182 * 13 12 11 33 33 H 1.07999 * 126.18744 * 180.02562 * 18 17 16 34 34 H 1.08999 * 110.01457 * 232.38552 * 22 12 11 35 35 H 1.08992 * 110.01552 * 353.72750 * 22 12 11 36 36 H 1.09005 * 110.49308 * 93.72499 * 23 22 12 37 37 H 1.08999 * 110.49228 * 216.25731 * 23 22 12 38 38 H 1.08996 * 110.35336 * 278.70806 * 24 23 22 39 39 H 1.08994 * 111.51264 * 155.19478 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2124 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 2.9932 -1.2604 0.4377 9 7 1.4483 -2.3144 -0.5738 10 6 0.3361 -2.3145 -1.5406 11 6 0.4997 -3.6408 -2.3283 12 6 0.9720 -4.6096 -1.2155 13 7 -0.1412 -5.2159 -0.4812 14 6 -1.0033 -6.0329 -1.1184 15 8 -0.8573 -6.2661 -2.3024 16 6 -2.1266 -6.6454 -0.3772 17 7 -3.0547 -7.4742 -0.8891 18 6 -3.8698 -7.7931 0.0838 19 7 -3.4458 -7.1616 1.1942 20 1 -3.8604 -7.2147 2.0695 21 7 -2.3928 -6.4798 0.8999 22 6 1.9060 -5.6630 -1.8296 23 6 3.3082 -5.4087 -1.2400 24 6 3.2978 -3.9045 -0.8280 25 6 1.8517 -3.7037 -0.3141 26 1 1.7558 -3.9629 0.7403 27 1 -0.4851 -0.8359 0.0834 28 1 -0.6205 -2.2958 -1.0184 29 1 0.4186 -1.4613 -2.2139 30 1 1.2550 -3.5450 -3.1084 31 1 -0.4530 -3.9637 -2.7480 32 1 -0.2579 -5.0296 0.4635 33 1 -4.7276 -8.4450 0.0093 34 1 1.5653 -6.6637 -1.5640 35 1 1.9307 -5.5530 -2.9136 36 1 3.4704 -6.0304 -0.3595 37 1 4.0772 -5.6002 -1.9884 38 1 3.4891 -3.2726 -1.6953 39 1 4.0190 -3.7020 -0.0363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992336492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:50 Heat of formation + Delta-G solvation = 80.321518 kcal Electronic energy + Delta-G solvation = -23970.669188 eV Core-core repulsion = 20529.748637 eV Total energy + Delta-G solvation = -3440.920551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.61950 -40.16956 -38.05044 -34.47947 -33.62401 -33.50829 -31.83462 -31.27873 -29.72310 -26.59024 -26.41532 -24.40546 -23.75572 -23.07538 -21.14428 -20.13633 -19.79649 -19.01541 -18.75890 -17.44153 -17.20623 -16.48365 -15.98913 -15.00907 -14.89858 -14.49069 -14.27953 -13.71219 -13.58037 -13.45910 -12.97380 -12.58932 -12.37185 -11.90250 -11.68935 -11.48828 -10.95872 -10.88982 -10.68311 -10.65630 -10.59681 -10.43212 -10.29628 -10.14402 -9.97149 -9.91038 -9.89140 -9.76415 -9.47383 -8.70242 -8.34941 -6.90758 -6.06397 -3.12992 1.24059 2.01349 2.42214 3.02344 3.44702 3.51443 3.56449 3.73615 4.18128 4.29649 4.59554 4.69563 4.89389 5.08053 5.24436 5.36972 5.60825 5.68079 5.76570 5.81013 5.86557 6.02820 6.05942 6.07802 6.17500 6.21824 6.35122 6.39078 6.47406 6.49849 6.61240 6.72209 6.87758 6.97562 7.10768 7.14388 7.57391 7.85942 7.90347 8.34877 8.52442 9.04692 9.84657 10.40983 11.25089 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.004905 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.549438 B = 5707.503440 C = 6590.916164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.024 4.024 3 Si 1.063 2.937 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.334 4.334 8 H 0.064 0.936 9 N -0.594 5.594 10 C 0.145 3.855 11 C -0.134 4.134 12 C 0.162 3.838 13 N -0.687 5.687 14 C 0.611 3.389 15 O -0.508 6.508 16 C 0.156 3.844 17 N -0.462 5.462 18 C 0.192 3.808 19 N -0.400 5.400 20 H 0.451 0.549 21 N -0.274 5.274 22 C -0.111 4.111 23 C -0.125 4.125 24 C -0.125 4.125 25 C 0.161 3.839 26 H 0.047 0.953 27 H 0.268 0.732 28 H 0.024 0.976 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.407 0.593 33 H 0.230 0.770 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.672 -15.899 2.705 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.226 4.226 3 Si 0.893 3.107 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.462 4.462 8 H 0.082 0.918 9 N -0.319 5.319 10 C 0.019 3.981 11 C -0.174 4.174 12 C 0.076 3.924 13 N -0.338 5.338 14 C 0.392 3.608 15 O -0.380 6.380 16 C -0.125 4.125 17 N -0.187 5.187 18 C -0.106 4.106 19 N -0.123 5.123 20 H 0.297 0.703 21 N -0.115 5.115 22 C -0.150 4.150 23 C -0.163 4.163 24 C -0.165 4.165 25 C 0.053 3.947 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.243 0.757 33 H 0.246 0.754 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.238 -13.987 1.707 14.714 hybrid contribution -0.630 -1.848 1.351 2.374 sum -4.868 -15.835 3.058 16.846 Atomic orbital electron populations 1.70772 1.06742 1.30218 1.47751 1.25732 0.96376 1.01108 0.99381 0.83553 0.74838 0.76176 0.76158 1.21215 1.22081 1.22091 1.19680 0.99523 0.88109 1.38910 0.91821 1.44584 1.39931 0.99801 1.47559 1.21601 0.91294 0.94362 0.90811 1.23208 1.01558 0.96001 0.96589 1.21665 0.85258 0.92304 0.93156 1.45680 1.27860 1.46485 1.13809 1.16276 0.79749 0.79032 0.85720 1.90815 1.72507 1.60693 1.13951 1.24036 0.99703 1.00933 0.87794 1.71311 1.04101 1.13715 1.29551 1.26735 1.01639 1.00116 0.82121 1.45137 1.19978 1.33461 1.13700 0.70257 1.74328 1.03646 1.16299 1.17262 1.22266 0.94210 0.97990 1.00551 1.22561 0.96293 0.97561 0.99861 1.23063 0.98007 0.94278 1.01168 1.21817 0.91816 0.85817 0.95253 0.93526 0.92047 0.95803 0.93087 0.90553 0.91037 0.75712 0.75390 0.92004 0.90847 0.92355 0.92010 0.90807 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.63 12.99 55.49 0.72 -26.91 16 2 C -0.02 -0.67 5.08 -17.43 -0.09 -0.76 16 3 Si 1.06 25.34 30.00 -169.99 -5.10 20.24 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.33 -9.22 9.71 -15.06 -0.15 -9.37 16 8 H 0.06 1.75 7.97 -52.49 -0.42 1.33 16 9 N -0.59 -14.67 2.91 -160.96 -0.47 -15.13 16 10 C 0.14 3.46 5.36 -2.44 -0.01 3.45 16 11 C -0.13 -2.70 5.80 -24.59 -0.14 -2.84 16 12 C 0.16 2.98 0.74 -129.37 -0.10 2.88 16 13 N -0.69 -11.86 5.24 -46.27 -0.24 -12.10 16 14 C 0.61 10.89 7.00 -12.32 -0.09 10.81 16 15 O -0.51 -10.28 14.97 5.31 0.08 -10.20 16 16 C 0.16 2.44 7.96 -156.35 -1.24 1.20 16 17 N -0.46 -6.58 11.41 -12.37 -0.14 -6.72 16 18 C 0.19 1.59 13.14 -90.48 -1.19 0.40 16 19 N -0.40 -3.20 6.93 29.56 0.20 -3.00 16 20 H 0.45 1.50 8.96 -190.21 -1.70 -0.20 16 21 N -0.27 -3.54 11.98 32.07 0.38 -3.16 16 22 C -0.11 -1.83 5.24 -25.79 -0.14 -1.96 16 23 C -0.12 -1.87 6.85 -24.51 -0.17 -2.03 16 24 C -0.13 -2.26 6.33 -24.21 -0.15 -2.42 16 25 C 0.16 3.27 3.61 -65.60 -0.24 3.03 16 26 H 0.05 0.97 7.97 -51.93 -0.41 0.56 16 27 H 0.27 8.17 6.19 -40.82 -0.25 7.92 16 28 H 0.02 0.62 6.83 -51.93 -0.35 0.26 16 29 H 0.05 1.33 8.04 -51.93 -0.42 0.91 16 30 H 0.08 1.48 7.62 -51.93 -0.40 1.08 16 31 H 0.07 1.46 6.84 -51.93 -0.36 1.10 16 32 H 0.41 6.71 8.19 -40.82 -0.33 6.38 16 33 H 0.23 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.06 1.01 7.40 -51.93 -0.38 0.63 16 35 H 0.07 1.21 7.37 -51.93 -0.38 0.83 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.44 8.09 -51.93 -0.42 1.02 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 318.53 15.07 4.80 4.80 Total: -1.00 -35.82 318.53 -9.78 -45.60 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.32 Total: 4.20 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -3.70 Total: 2.38 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: 0.46 Total: -67.02 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.10 Total: 20.24 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.82 -9.78 -45.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992336492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.920 kcal (2) G-P(sol) polarization free energy of solvation -35.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds