Wall clock time and date at job start Tue Mar 31 2020 07:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00636 * 2 1 4 4 H 1.48507 * 109.46812 * 0.02562 * 3 2 1 5 5 H 1.48492 * 109.47251 * 119.99872 * 3 2 1 6 6 H 1.48499 * 109.47440 * 240.00545 * 3 2 1 7 7 C 1.38820 * 119.99748 * 180.27500 * 2 1 3 8 8 H 1.07996 * 119.99859 * 208.32145 * 7 2 1 9 9 N 1.36938 * 119.99647 * 28.32310 * 7 2 1 10 10 C 1.47365 * 125.58024 * 19.13720 * 9 7 2 11 11 C 1.55131 * 104.69213 * 155.20648 * 10 9 7 12 12 C 1.54915 * 101.65552 * 37.40255 * 11 10 9 13 13 N 1.46497 * 112.78003 * 86.25376 * 12 11 10 14 14 C 1.34779 * 119.99737 * 64.06997 * 13 12 11 15 15 O 1.21560 * 119.99818 * 359.97438 * 14 13 12 16 16 C 1.47865 * 120.00154 * 179.97438 * 14 13 12 17 17 N 1.34556 * 126.04940 * 179.97438 * 16 14 13 18 18 C 1.30865 * 107.26798 * 180.02562 * 17 16 14 19 19 N 1.34588 * 107.62887 * 0.02562 * 18 17 16 20 20 H 0.96997 * 125.74529 * 180.02562 * 19 18 17 21 21 N 1.28852 * 108.49898 * 359.73050 * 19 18 17 22 22 C 1.53588 * 109.09360 * 211.69718 * 12 11 10 23 23 C 1.54221 * 106.67651 * 113.07742 * 22 12 11 24 24 C 1.55957 * 104.71189 * 335.63605 * 23 22 12 25 25 C 1.46977 * 125.57711 * 199.44580 * 9 7 2 26 26 H 1.09000 * 111.81496 * 59.06458 * 25 9 7 27 27 H 0.97002 * 120.00520 * 185.69647 * 1 2 3 28 28 H 1.08997 * 110.37182 * 274.14352 * 10 9 7 29 29 H 1.09003 * 110.36958 * 36.47843 * 10 9 7 30 30 H 1.09004 * 111.18180 * 279.25632 * 11 10 9 31 31 H 1.08993 * 110.89418 * 155.42869 * 11 10 9 32 32 H 0.96997 * 120.00694 * 244.06182 * 13 12 11 33 33 H 1.07999 * 126.18744 * 180.02562 * 18 17 16 34 34 H 1.08999 * 110.01457 * 232.38552 * 22 12 11 35 35 H 1.08992 * 110.01552 * 353.72750 * 22 12 11 36 36 H 1.09005 * 110.49308 * 93.72499 * 23 22 12 37 37 H 1.08999 * 110.49228 * 216.25731 * 23 22 12 38 38 H 1.08996 * 110.35336 * 278.70806 * 24 23 22 39 39 H 1.08994 * 111.51264 * 155.19478 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2124 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 2.9932 -1.2604 0.4377 9 7 1.4483 -2.3144 -0.5738 10 6 0.3361 -2.3145 -1.5406 11 6 0.4997 -3.6408 -2.3283 12 6 0.9720 -4.6096 -1.2155 13 7 -0.1412 -5.2159 -0.4812 14 6 -1.0033 -6.0329 -1.1184 15 8 -0.8573 -6.2661 -2.3024 16 6 -2.1266 -6.6454 -0.3772 17 7 -3.0547 -7.4742 -0.8891 18 6 -3.8698 -7.7931 0.0838 19 7 -3.4458 -7.1616 1.1942 20 1 -3.8604 -7.2147 2.0695 21 7 -2.3928 -6.4798 0.8999 22 6 1.9060 -5.6630 -1.8296 23 6 3.3082 -5.4087 -1.2400 24 6 3.2978 -3.9045 -0.8280 25 6 1.8517 -3.7037 -0.3141 26 1 1.7558 -3.9629 0.7403 27 1 -0.4851 -0.8359 0.0834 28 1 -0.6205 -2.2958 -1.0184 29 1 0.4186 -1.4613 -2.2139 30 1 1.2550 -3.5450 -3.1084 31 1 -0.4530 -3.9637 -2.7480 32 1 -0.2579 -5.0296 0.4635 33 1 -4.7276 -8.4450 0.0093 34 1 1.5653 -6.6637 -1.5640 35 1 1.9307 -5.5530 -2.9136 36 1 3.4704 -6.0304 -0.3595 37 1 4.0772 -5.6002 -1.9884 38 1 3.4891 -3.2726 -1.6953 39 1 4.0190 -3.7020 -0.0363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992336492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:49 Heat of formation + Delta-G solvation = 54.631514 kcal Electronic energy + Delta-G solvation = -23971.783190 eV Core-core repulsion = 20529.748637 eV Total energy + Delta-G solvation = -3442.034553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.49882 -41.67697 -39.56179 -36.30533 -34.95944 -34.47277 -33.49993 -32.55281 -31.39011 -28.27766 -27.95327 -25.71387 -25.60109 -23.89207 -22.64635 -21.73113 -21.20305 -20.35857 -19.81546 -19.39630 -18.44330 -17.45741 -17.42717 -16.70438 -15.96248 -15.82207 -15.68815 -15.54138 -15.27555 -15.06592 -14.65619 -14.24851 -13.58072 -13.26587 -13.20520 -13.17354 -12.69403 -12.43018 -12.26852 -12.03499 -11.95290 -11.87613 -11.80286 -11.71758 -11.59656 -11.51666 -11.32959 -11.23025 -10.81658 -10.46415 -10.15154 -8.98637 -8.28243 -5.31875 0.21931 1.14088 1.57440 1.59186 1.67161 1.85144 1.98546 2.21359 2.65362 3.08920 3.22616 3.28666 3.47589 3.51333 3.77670 3.85337 4.02188 4.22383 4.24284 4.35955 4.42984 4.53017 4.68814 4.76229 4.80660 4.83546 4.93259 5.03521 5.06518 5.15483 5.23027 5.24084 5.28660 5.49978 5.52731 5.75419 5.92239 6.28946 6.33895 6.88632 6.90996 7.06071 7.72713 8.32755 9.02204 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.004905 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.549438 B = 5707.503440 C = 6590.916164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.079 4.079 3 Si 1.114 2.886 4 H -0.296 1.296 5 H -0.272 1.272 6 H -0.282 1.282 7 C -0.335 4.335 8 H 0.065 0.935 9 N -0.609 5.609 10 C 0.155 3.845 11 C -0.121 4.121 12 C 0.169 3.831 13 N -0.686 5.686 14 C 0.611 3.389 15 O -0.540 6.540 16 C 0.124 3.876 17 N -0.510 5.510 18 C 0.220 3.780 19 N -0.379 5.379 20 H 0.473 0.527 21 N -0.283 5.283 22 C -0.105 4.105 23 C -0.109 4.109 24 C -0.119 4.119 25 C 0.153 3.847 26 H 0.045 0.955 27 H 0.252 0.748 28 H -0.002 1.002 29 H 0.019 0.981 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.410 0.590 33 H 0.288 0.712 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.280 -17.865 3.504 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.275 4.275 3 Si 0.939 3.061 4 H -0.222 1.222 5 H -0.198 1.198 6 H -0.208 1.208 7 C -0.463 4.463 8 H 0.083 0.917 9 N -0.334 5.334 10 C 0.029 3.971 11 C -0.161 4.161 12 C 0.083 3.917 13 N -0.337 5.337 14 C 0.394 3.606 15 O -0.414 6.414 16 C -0.156 4.156 17 N -0.236 5.236 18 C -0.077 4.077 19 N -0.105 5.105 20 H 0.324 0.676 21 N -0.127 5.127 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.159 4.159 25 C 0.046 3.954 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.015 0.985 29 H 0.038 0.962 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.246 0.754 33 H 0.303 0.697 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.836 -15.999 2.555 16.650 hybrid contribution -0.876 -1.327 1.191 1.987 sum -4.712 -17.327 3.746 18.343 Atomic orbital electron populations 1.70894 1.07843 1.29247 1.50948 1.27097 0.96409 1.04571 0.99418 0.82869 0.73837 0.72083 0.77356 1.22234 1.19769 1.20822 1.19954 0.99402 0.89216 1.37750 0.91698 1.44762 1.39773 1.01223 1.47663 1.21372 0.90145 0.95213 0.90366 1.23080 1.01715 0.94291 0.96974 1.21570 0.85673 0.92503 0.91990 1.45628 1.27814 1.46408 1.13811 1.16566 0.80058 0.78473 0.85524 1.90775 1.73487 1.61868 1.15249 1.23542 1.00346 1.02981 0.88691 1.71239 1.05294 1.14871 1.32200 1.27742 1.01084 0.98425 0.80401 1.45159 1.18455 1.31892 1.14965 0.67592 1.74223 1.05269 1.16963 1.16218 1.22219 0.94465 0.97180 1.00500 1.22498 0.95863 0.95070 1.01218 1.22932 0.95956 0.96511 1.00530 1.22053 0.93857 0.83829 0.95643 0.93765 0.93753 0.98453 0.96247 0.89600 0.91524 0.75416 0.69659 0.91626 0.90780 0.90490 0.89505 0.92403 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.31 12.99 21.65 0.28 -59.03 16 2 C -0.08 -4.57 5.08 84.86 0.43 -4.13 16 3 Si 1.11 51.68 30.00 68.60 2.06 53.73 16 4 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.33 -18.74 9.71 84.04 0.82 -17.92 16 8 H 0.07 3.56 7.97 -2.91 -0.02 3.54 16 9 N -0.61 -30.84 2.91 -663.16 -1.93 -32.77 16 10 C 0.15 7.77 5.36 86.94 0.47 8.24 16 11 C -0.12 -5.01 5.80 31.98 0.19 -4.82 16 12 C 0.17 6.20 0.74 5.19 0.00 6.21 16 13 N -0.69 -23.97 5.24 -418.57 -2.19 -26.17 16 14 C 0.61 22.06 7.00 86.79 0.61 22.67 16 15 O -0.54 -22.18 14.97 -3.90 -0.06 -22.24 16 16 C 0.12 3.84 7.96 137.12 1.09 4.93 16 17 N -0.51 -13.87 11.41 -193.03 -2.20 -16.07 16 18 C 0.22 2.94 13.14 180.30 2.37 5.31 16 19 N -0.38 -5.05 6.93 -60.38 -0.42 -5.47 16 20 H 0.47 1.58 8.96 -219.80 -1.97 -0.39 16 21 N -0.28 -7.01 11.98 -52.44 -0.63 -7.64 16 22 C -0.10 -3.27 5.24 31.21 0.16 -3.11 16 23 C -0.11 -2.94 6.85 32.03 0.22 -2.72 16 24 C -0.12 -4.15 6.33 32.23 0.20 -3.95 16 25 C 0.15 6.20 3.61 46.24 0.17 6.37 16 26 H 0.04 1.84 7.97 -2.39 -0.02 1.82 16 27 H 0.25 16.18 6.19 -92.71 -0.57 15.61 16 28 H 0.00 -0.12 6.83 -2.39 -0.02 -0.14 16 29 H 0.02 1.06 8.04 -2.39 -0.02 1.05 16 30 H 0.09 3.35 7.62 -2.38 -0.02 3.33 16 31 H 0.07 2.82 6.84 -2.39 -0.02 2.80 16 32 H 0.41 13.77 8.19 -92.71 -0.76 13.01 16 33 H 0.29 -0.09 8.06 -2.91 -0.02 -0.11 16 34 H 0.07 2.03 7.40 -2.39 -0.02 2.02 16 35 H 0.07 2.32 7.37 -2.39 -0.02 2.30 16 36 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 2.20 8.09 -2.39 -0.02 2.18 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -81.73 318.53 0.20 -81.52 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -1.43 Total: 17.06 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 6.72 Total: 17.07 kcal Atomic # 7 Polarization: -140.06 SS G_CDS: -7.09 Total: -147.15 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.06 Total: -22.24 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.06 Total: 53.73 kcal Total: -81.73 0.20 -81.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992336492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.153 kcal (2) G-P(sol) polarization free energy of solvation -81.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds