Wall clock time and date at job start Tue Mar 31 2020 06:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99409 * 2 1 4 4 O 1.21522 * 119.99360 * 182.15402 * 3 2 1 5 5 C 1.48154 * 120.00543 * 2.14209 * 3 2 1 6 6 C 1.39166 * 119.68709 * 172.81961 * 5 3 2 7 7 C 1.38742 * 119.17904 * 179.97438 * 6 5 3 8 8 C 1.38365 * 118.56287 * 0.02562 * 7 6 5 9 9 C 1.39244 * 119.30642 * 359.97438 * 8 7 6 10 10 O 1.35669 * 119.61611 * 180.02562 * 9 8 7 11 11 N 1.31928 * 120.76761 * 359.74225 * 9 8 7 12 12 C 1.46502 * 120.00221 * 179.97438 * 2 1 3 13 13 C 1.53783 * 113.61088 * 39.14559 * 12 2 1 14 14 C 1.53953 * 87.01778 * 220.04516 * 13 12 2 15 15 N 1.46497 * 113.74684 * 139.93998 * 14 13 12 16 16 C 1.36935 * 119.99980 * 107.40058 * 15 14 13 17 17 H 1.08007 * 120.00134 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00520 * 180.02562 * 16 15 14 19 19 N 1.31614 * 119.99356 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00227 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47060 * 59.99987 * 20 18 16 22 22 H 1.48508 * 109.47036 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47168 * 299.99637 * 20 18 16 24 24 C 1.53775 * 113.61507 * 301.53830 * 12 2 1 25 25 H 1.09005 * 109.47326 * 83.79468 * 1 2 3 26 26 H 1.09005 * 109.47266 * 203.79449 * 1 2 3 27 27 H 1.08996 * 109.47884 * 323.79384 * 1 2 3 28 28 H 1.07989 * 120.41305 * 359.96314 * 6 5 3 29 29 H 1.08002 * 120.71801 * 180.02562 * 7 6 5 30 30 H 1.08003 * 120.35077 * 179.97438 * 8 7 6 31 31 H 0.96701 * 114.00250 * 90.00314 * 10 9 8 32 32 H 1.08999 * 112.84854 * 170.33614 * 12 2 1 33 33 H 1.09007 * 113.61621 * 334.56161 * 13 12 2 34 34 H 1.08994 * 113.61558 * 105.46345 * 13 12 2 35 35 H 1.08996 * 113.54017 * 270.81247 * 14 13 12 36 36 H 0.97006 * 120.00397 * 287.40882 * 15 14 13 37 37 H 0.97008 * 119.99925 * 180.02562 * 19 18 16 38 38 H 1.09005 * 113.61124 * 254.52326 * 24 12 2 39 39 H 1.08997 * 113.62161 * 25.42909 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3533 1.1676 -0.0396 5 6 1.3987 2.4498 0.0480 6 6 2.0978 3.6437 0.1989 7 6 1.3943 4.8387 0.2419 8 6 0.0155 4.7990 0.1331 9 6 -0.6213 3.5697 -0.0159 10 8 -1.9729 3.5234 -0.1237 11 7 0.0749 2.4498 -0.0591 12 6 2.1976 -1.2687 0.0006 13 6 1.5592 -2.3490 -0.8885 14 6 1.9075 -3.3556 0.2230 15 7 0.8615 -4.3522 0.4653 16 6 1.0452 -5.6488 0.0650 17 1 1.9615 -5.9368 -0.4290 18 6 0.0539 -6.5932 0.2941 19 7 -1.0624 -6.2423 0.8965 20 14 0.3043 -8.3617 -0.2527 21 1 1.4997 -8.9248 0.4251 22 1 -0.8920 -9.1650 0.1064 23 1 0.5045 -8.4014 -1.7235 24 6 1.8673 -2.1702 1.2018 25 1 -0.3634 0.1111 -1.0217 26 1 -0.3634 -0.9403 0.4146 27 1 -0.3635 0.8291 0.6070 28 1 3.1745 3.6400 0.2816 29 1 1.9117 5.7796 0.3578 30 1 -0.5609 5.7118 0.1635 31 1 -2.2972 3.5814 -1.0328 32 1 3.2667 -1.1402 -0.1681 33 1 0.4875 -2.2155 -1.0365 34 1 2.0977 -2.5221 -1.8201 35 1 2.8973 -3.7988 0.1144 36 1 0.0386 -4.0937 0.9092 37 1 -1.7551 -6.9023 1.0570 38 1 2.6545 -2.1992 1.9553 39 1 0.8802 -1.9878 1.6264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998591540.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:59 Heat of formation + Delta-G solvation = 21.654703 kcal Electronic energy + Delta-G solvation = -22710.070190 eV Core-core repulsion = 19234.312904 eV Total energy + Delta-G solvation = -3475.757286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.15135 -39.71139 -38.07719 -37.12197 -34.89064 -33.36436 -32.55643 -30.75244 -29.88253 -26.83898 -25.62894 -25.07687 -24.06523 -23.62785 -22.25795 -20.18948 -18.91373 -18.64268 -17.65055 -17.06931 -16.81673 -16.32649 -16.18037 -15.69910 -15.21416 -14.65701 -14.47666 -13.99416 -13.83179 -13.42553 -13.01330 -12.84383 -12.76449 -12.60439 -12.28635 -12.00208 -11.84373 -11.71994 -11.22286 -10.87299 -10.61001 -10.52127 -10.37273 -10.29915 -10.15395 -9.92166 -9.61789 -9.37088 -9.23734 -8.87703 -8.35155 -6.97227 -5.78348 -3.07242 0.28673 0.72783 2.53357 2.92827 3.19091 3.44232 3.48651 3.49600 3.55127 4.11201 4.40335 4.56417 4.59691 4.64452 4.94826 5.09922 5.16274 5.20791 5.41013 5.48021 5.53146 5.53729 5.67740 5.86819 5.90900 5.98063 6.00883 6.17564 6.25817 6.34140 6.39371 6.51207 6.59531 6.82861 7.04561 7.08837 7.34600 7.53968 7.69684 8.13937 8.40061 9.51252 10.08242 10.43027 11.43976 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029984 B = 0.003130 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.607966 B = 8942.784568 C = 9668.254777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.573 5.573 3 C 0.562 3.438 4 O -0.541 6.541 5 C 0.110 3.890 6 C -0.123 4.123 7 C -0.066 4.066 8 C -0.168 4.168 9 C 0.304 3.696 10 O -0.479 6.479 11 N -0.467 5.467 12 C 0.111 3.889 13 C -0.173 4.173 14 C 0.170 3.830 15 N -0.709 5.709 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.162 4.162 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.153 0.847 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.403 0.597 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.065 0.935 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 24.759 -2.670 24.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.302 5.302 3 C 0.348 3.652 4 O -0.418 6.418 5 C -0.028 4.028 6 C -0.144 4.144 7 C -0.092 4.092 8 C -0.189 4.189 9 C 0.123 3.877 10 O -0.286 6.286 11 N -0.189 5.189 12 C 0.008 3.992 13 C -0.215 4.215 14 C 0.057 3.943 15 N -0.347 5.347 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.202 4.202 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.121 0.879 28 H 0.170 0.830 29 H 0.165 0.835 30 H 0.162 0.838 31 H 0.261 0.739 32 H 0.133 0.867 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.109 23.685 -2.245 23.885 hybrid contribution -0.144 -0.029 -0.580 0.598 sum 1.964 23.657 -2.824 23.906 Atomic orbital electron populations 1.22360 0.77966 1.03716 1.02755 1.47812 1.08048 1.05213 1.69082 1.17911 0.86552 0.83005 0.77763 1.90767 1.12740 1.86791 1.51537 1.21050 0.88317 0.94641 0.98830 1.22147 1.02655 0.91548 0.98015 1.21551 0.93419 0.98816 0.95396 1.22345 0.95541 0.98751 1.02252 1.19318 0.84567 0.87826 0.95980 1.84812 1.14948 1.95589 1.33290 1.67733 1.07683 1.30201 1.13296 1.22734 0.97300 0.80162 0.98959 1.24357 1.01250 0.96521 0.99397 1.21367 0.93758 0.87237 0.91927 1.42350 1.17205 1.05546 1.69616 1.19272 1.01225 0.85531 1.31559 0.91044 1.24764 0.96521 0.98296 1.01255 1.69651 1.07286 1.33801 1.47328 0.86254 0.76827 0.84724 0.78295 1.21212 1.21696 1.21222 1.23930 1.01953 0.97064 0.97235 0.92668 0.91223 0.87917 0.82972 0.83524 0.83772 0.73924 0.86706 0.89754 0.92097 0.90224 0.78067 0.93396 0.91662 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 8.02 59.85 0.48 1.53 16 2 N -0.57 -8.80 3.08 -174.00 -0.54 -9.34 16 3 C 0.56 8.63 7.66 -12.19 -0.09 8.53 16 4 O -0.54 -9.43 15.81 5.35 0.08 -9.34 16 5 C 0.11 1.38 6.62 -83.02 -0.55 0.83 16 6 C -0.12 -1.20 9.63 -39.05 -0.38 -1.57 16 7 C -0.07 -0.45 10.16 -39.35 -0.40 -0.85 16 8 C -0.17 -1.18 10.04 -39.16 -0.39 -1.58 16 9 C 0.30 2.88 7.74 -17.14 -0.13 2.75 16 10 O -0.48 -3.88 13.56 -18.71 -0.25 -4.14 16 11 N -0.47 -5.54 6.07 -9.88 -0.06 -5.60 16 12 C 0.11 1.82 4.22 -67.12 -0.28 1.54 16 13 C -0.17 -3.08 7.31 -25.83 -0.19 -3.27 16 14 C 0.17 3.40 4.48 -67.03 -0.30 3.10 16 15 N -0.71 -17.75 5.41 -52.55 -0.28 -18.04 16 16 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 20 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C -0.16 -2.80 7.34 -25.92 -0.19 -2.99 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.04 6.10 -51.93 -0.32 0.72 16 27 H 0.10 1.41 5.26 -52.08 -0.27 1.14 16 28 H 0.15 1.39 7.65 -52.49 -0.40 0.99 16 29 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 30 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 31 H 0.40 1.30 9.06 45.56 0.41 1.72 16 32 H 0.12 1.90 7.20 -51.93 -0.37 1.53 16 33 H 0.08 1.56 6.67 -51.92 -0.35 1.22 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 36 H 0.39 10.19 7.92 -40.82 -0.32 9.87 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.47 6.88 -51.93 -0.36 1.11 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -33.60 328.08 -7.14 -40.74 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.06 Total: 10.15 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -2.67 Total: 0.63 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.16 Total: -60.32 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.17 Total: -13.48 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.60 -7.14 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998591540.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.390 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds