Wall clock time and date at job start Tue Mar 31 2020 06:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99409 * 2 1 4 4 O 1.21522 * 119.99360 * 182.15402 * 3 2 1 5 5 C 1.48154 * 120.00543 * 2.14209 * 3 2 1 6 6 C 1.39166 * 119.68709 * 172.81961 * 5 3 2 7 7 C 1.38742 * 119.17904 * 179.97438 * 6 5 3 8 8 C 1.38365 * 118.56287 * 0.02562 * 7 6 5 9 9 C 1.39244 * 119.30642 * 359.97438 * 8 7 6 10 10 O 1.35669 * 119.61611 * 180.02562 * 9 8 7 11 11 N 1.31928 * 120.76761 * 359.74225 * 9 8 7 12 12 C 1.46502 * 120.00221 * 179.97438 * 2 1 3 13 13 C 1.53783 * 113.61088 * 39.14559 * 12 2 1 14 14 C 1.53953 * 87.01778 * 220.04516 * 13 12 2 15 15 N 1.46497 * 113.74684 * 139.93998 * 14 13 12 16 16 C 1.36935 * 119.99980 * 107.40058 * 15 14 13 17 17 H 1.08007 * 120.00134 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00520 * 180.02562 * 16 15 14 19 19 N 1.31614 * 119.99356 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00227 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47060 * 59.99987 * 20 18 16 22 22 H 1.48508 * 109.47036 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47168 * 299.99637 * 20 18 16 24 24 C 1.53775 * 113.61507 * 301.53830 * 12 2 1 25 25 H 1.09005 * 109.47326 * 83.79468 * 1 2 3 26 26 H 1.09005 * 109.47266 * 203.79449 * 1 2 3 27 27 H 1.08996 * 109.47884 * 323.79384 * 1 2 3 28 28 H 1.07989 * 120.41305 * 359.96314 * 6 5 3 29 29 H 1.08002 * 120.71801 * 180.02562 * 7 6 5 30 30 H 1.08003 * 120.35077 * 179.97438 * 8 7 6 31 31 H 0.96701 * 114.00250 * 90.00314 * 10 9 8 32 32 H 1.08999 * 112.84854 * 170.33614 * 12 2 1 33 33 H 1.09007 * 113.61621 * 334.56161 * 13 12 2 34 34 H 1.08994 * 113.61558 * 105.46345 * 13 12 2 35 35 H 1.08996 * 113.54017 * 270.81247 * 14 13 12 36 36 H 0.97006 * 120.00397 * 287.40882 * 15 14 13 37 37 H 0.97008 * 119.99925 * 180.02562 * 19 18 16 38 38 H 1.09005 * 113.61124 * 254.52326 * 24 12 2 39 39 H 1.08997 * 113.62161 * 25.42909 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3533 1.1676 -0.0396 5 6 1.3987 2.4498 0.0480 6 6 2.0978 3.6437 0.1989 7 6 1.3943 4.8387 0.2419 8 6 0.0155 4.7990 0.1331 9 6 -0.6213 3.5697 -0.0159 10 8 -1.9729 3.5234 -0.1237 11 7 0.0749 2.4498 -0.0591 12 6 2.1976 -1.2687 0.0006 13 6 1.5592 -2.3490 -0.8885 14 6 1.9075 -3.3556 0.2230 15 7 0.8615 -4.3522 0.4653 16 6 1.0452 -5.6488 0.0650 17 1 1.9615 -5.9368 -0.4290 18 6 0.0539 -6.5932 0.2941 19 7 -1.0624 -6.2423 0.8965 20 14 0.3043 -8.3617 -0.2527 21 1 1.4997 -8.9248 0.4251 22 1 -0.8920 -9.1650 0.1064 23 1 0.5045 -8.4014 -1.7235 24 6 1.8673 -2.1702 1.2018 25 1 -0.3634 0.1111 -1.0217 26 1 -0.3634 -0.9403 0.4146 27 1 -0.3635 0.8291 0.6070 28 1 3.1745 3.6400 0.2816 29 1 1.9117 5.7796 0.3578 30 1 -0.5609 5.7118 0.1635 31 1 -2.2972 3.5814 -1.0328 32 1 3.2667 -1.1402 -0.1681 33 1 0.4875 -2.2155 -1.0365 34 1 2.0977 -2.5221 -1.8201 35 1 2.8973 -3.7988 0.1144 36 1 0.0386 -4.0937 0.9092 37 1 -1.7551 -6.9023 1.0570 38 1 2.6545 -2.1992 1.9553 39 1 0.8802 -1.9878 1.6264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998591540.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:58 Heat of formation + Delta-G solvation = -3.880819 kcal Electronic energy + Delta-G solvation = -22711.177493 eV Core-core repulsion = 19234.312904 eV Total energy + Delta-G solvation = -3476.864589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.03033 -40.83027 -39.36168 -37.85595 -36.31125 -35.00466 -33.51777 -31.96217 -31.36595 -28.04517 -26.92753 -26.51961 -25.66384 -24.36201 -23.57788 -21.36683 -20.33702 -19.46756 -19.05237 -18.70213 -17.73322 -17.28199 -17.04691 -16.71575 -16.44629 -16.12949 -15.98287 -15.38592 -14.97553 -14.63530 -14.28045 -14.24588 -13.98344 -13.49786 -13.35898 -13.23628 -13.13726 -13.06228 -12.75282 -12.59473 -12.28322 -12.16430 -12.03028 -11.75862 -11.49899 -11.32440 -10.99509 -10.87503 -10.19227 -10.04910 -9.59652 -9.00449 -7.94651 -5.23560 -0.46402 0.09798 1.48177 1.51005 1.56988 1.57523 1.84815 2.44381 2.57269 2.73194 3.26790 3.36469 3.68533 3.77347 3.80806 3.90997 3.93448 4.04129 4.17583 4.25585 4.32591 4.38966 4.53170 4.69988 4.76730 4.83946 4.85903 4.94324 5.02793 5.06363 5.10229 5.18050 5.41110 5.46429 5.52117 5.61514 6.26503 6.29128 6.50578 6.73970 6.99664 7.33283 8.07790 8.32156 9.28413 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029984 B = 0.003130 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.607966 B = 8942.784568 C = 9668.254777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.579 5.579 3 C 0.558 3.442 4 O -0.569 6.569 5 C 0.079 3.921 6 C -0.124 4.124 7 C -0.053 4.053 8 C -0.149 4.149 9 C 0.293 3.707 10 O -0.489 6.489 11 N -0.492 5.492 12 C 0.126 3.874 13 C -0.161 4.161 14 C 0.156 3.844 15 N -0.723 5.723 16 C -0.247 4.247 17 H 0.078 0.922 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.974 3.026 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.278 1.278 24 C -0.150 4.150 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.110 0.890 28 H 0.154 0.846 29 H 0.188 0.812 30 H 0.179 0.821 31 H 0.422 0.578 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.074 0.926 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 27.159 -3.104 27.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.307 5.307 3 C 0.346 3.654 4 O -0.449 6.449 5 C -0.057 4.057 6 C -0.145 4.145 7 C -0.078 4.078 8 C -0.170 4.170 9 C 0.112 3.888 10 O -0.299 6.299 11 N -0.215 5.215 12 C 0.022 3.978 13 C -0.203 4.203 14 C 0.045 3.955 15 N -0.360 5.360 16 C -0.378 4.378 17 H 0.096 0.904 18 C -0.267 4.267 19 N -0.620 5.620 20 Si 0.802 3.198 21 H -0.204 1.204 22 H -0.222 1.222 23 H -0.204 1.204 24 C -0.190 4.190 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.127 0.873 28 H 0.171 0.829 29 H 0.205 0.795 30 H 0.197 0.803 31 H 0.283 0.717 32 H 0.134 0.866 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.514 26.124 -2.711 26.384 hybrid contribution -0.275 -0.591 -0.465 0.800 sum 2.239 25.533 -3.176 25.827 Atomic orbital electron populations 1.22313 0.77280 1.03169 1.02939 1.47832 1.08404 1.05023 1.69459 1.18409 0.86472 0.83871 0.76600 1.90731 1.13942 1.87402 1.52787 1.20668 0.88826 0.93910 1.02320 1.22297 1.02895 0.91735 0.97616 1.21993 0.93366 0.99142 0.93304 1.22724 0.95828 0.98936 0.99541 1.19614 0.84940 0.88153 0.96107 1.84778 1.14352 1.95574 1.35213 1.67473 1.07586 1.32068 1.14381 1.22447 0.97296 0.80599 0.97427 1.24125 1.00910 0.96143 0.99115 1.21651 0.92663 0.87190 0.94004 1.42499 1.17915 1.05777 1.69850 1.19681 1.01119 0.86713 1.30333 0.90396 1.25571 0.96540 1.02312 1.02258 1.69810 1.08157 1.34747 1.49258 0.85214 0.76543 0.79909 0.78103 1.20383 1.22226 1.20397 1.23768 1.02006 0.95808 0.97390 0.92419 0.92574 0.87283 0.82866 0.79452 0.80326 0.71709 0.86585 0.90629 0.91463 0.89900 0.79350 0.93987 0.90734 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.43 8.02 127.77 1.02 3.45 16 2 N -0.58 -17.92 3.08 -822.70 -2.54 -20.45 16 3 C 0.56 17.21 7.66 86.88 0.67 17.87 16 4 O -0.57 -19.95 15.81 -3.78 -0.06 -20.01 16 5 C 0.08 1.94 6.62 41.85 0.28 2.21 16 6 C -0.12 -2.20 9.63 22.61 0.22 -1.98 16 7 C -0.05 -0.52 10.16 22.42 0.23 -0.29 16 8 C -0.15 -1.53 10.04 22.54 0.23 -1.30 16 9 C 0.29 4.92 7.74 84.92 0.66 5.58 16 10 O -0.49 -6.92 13.56 -89.86 -1.22 -8.14 16 11 N -0.49 -11.22 6.07 -298.19 -1.81 -13.03 16 12 C 0.13 4.12 4.22 45.52 0.19 4.32 16 13 C -0.16 -5.76 7.31 31.18 0.23 -5.53 16 14 C 0.16 6.26 4.48 45.58 0.20 6.47 16 15 N -0.72 -36.84 5.41 -320.17 -1.73 -38.57 16 16 C -0.25 -13.77 9.97 84.03 0.84 -12.93 16 17 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 19 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 20 Si 0.97 46.33 29.55 68.60 2.03 48.35 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 C -0.15 -5.23 7.34 31.12 0.23 -5.00 16 25 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.06 1.73 6.10 -2.38 -0.01 1.71 16 27 H 0.11 3.03 5.26 -2.68 -0.01 3.01 16 28 H 0.15 2.60 7.65 -2.92 -0.02 2.58 16 29 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 30 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 31 H 0.42 1.88 9.06 -74.06 -0.67 1.21 16 32 H 0.12 3.82 7.20 -2.39 -0.02 3.81 16 33 H 0.08 2.85 6.67 -2.38 -0.02 2.83 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.08 3.27 8.10 -2.39 -0.02 3.25 16 36 H 0.37 20.42 7.92 -92.70 -0.73 19.68 16 37 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 38 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 39 H 0.08 2.79 6.88 -2.39 -0.02 2.77 16 Total: -1.00 -73.37 328.08 0.10 -73.26 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: -0.30 Total: 28.83 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 5.45 Total: 9.03 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -5.79 Total: -131.33 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -1.28 Total: -28.15 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -73.37 0.10 -73.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998591540.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.381 kcal (2) G-P(sol) polarization free energy of solvation -73.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds