Wall clock time and date at job start Tue Mar 31 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34777 * 120.00220 * 2 1 4 4 O 1.21510 * 120.00511 * 176.36181 * 3 2 1 5 5 C 1.48172 * 119.99732 * 356.36150 * 3 2 1 6 6 C 1.39962 * 120.88958 * 35.61985 * 5 3 2 7 7 C 1.37982 * 119.13231 * 179.97438 * 6 5 3 8 8 N 1.31903 * 120.97565 * 359.97438 * 7 6 5 9 9 C 1.32177 * 121.97474 * 0.02562 * 8 7 6 10 10 O 1.35678 * 119.62277 * 180.02562 * 9 8 7 11 11 C 1.38890 * 120.74948 * 359.73677 * 9 8 7 12 12 C 1.46498 * 120.00223 * 180.02562 * 2 1 3 13 13 C 1.53775 * 113.61626 * 59.99582 * 12 2 1 14 14 C 1.53782 * 87.08328 * 220.02140 * 13 12 2 15 15 N 1.46502 * 113.61735 * 139.97769 * 14 13 12 16 16 C 1.36937 * 120.00035 * 154.99815 * 15 14 13 17 17 H 1.07998 * 119.99847 * 0.02562 * 16 15 14 18 18 C 1.38806 * 119.99891 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99844 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00089 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47150 * 90.00346 * 20 18 16 22 22 H 1.48500 * 109.47131 * 210.00025 * 20 18 16 23 23 H 1.48499 * 109.47258 * 329.99995 * 20 18 16 24 24 C 1.53786 * 87.08152 * 25.43109 * 14 13 12 25 25 H 1.08999 * 109.47134 * 275.32517 * 1 2 3 26 26 H 1.08997 * 109.47343 * 35.32399 * 1 2 3 27 27 H 1.09002 * 109.47089 * 155.32531 * 1 2 3 28 28 H 1.07997 * 120.43587 * 359.95826 * 6 5 3 29 29 H 1.07996 * 119.51273 * 179.97438 * 7 6 5 30 30 H 0.96701 * 114.00509 * 89.99888 * 10 9 8 31 31 H 1.08005 * 120.52777 * 180.28790 * 11 9 8 32 32 H 1.08999 * 112.90874 * 191.25632 * 12 2 1 33 33 H 1.08998 * 113.61633 * 105.47542 * 13 12 2 34 34 H 1.09005 * 113.61684 * 334.56762 * 13 12 2 35 35 H 1.08999 * 113.61397 * 270.88735 * 14 13 12 36 36 H 0.96996 * 119.99986 * 335.00922 * 15 14 13 37 37 H 0.97001 * 119.99870 * 179.97438 * 19 18 16 38 38 H 1.09001 * 113.61065 * 89.11562 * 24 14 13 39 39 H 1.08992 * 113.61644 * 220.02159 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3521 1.1683 0.0668 5 6 1.4002 2.4491 -0.0814 6 6 0.1589 2.6042 0.5462 7 6 -0.4973 3.8140 0.4474 8 7 0.0287 4.8185 -0.2266 9 6 1.1978 4.7173 -0.8349 10 8 1.6944 5.7813 -1.5147 11 6 1.9264 3.5361 -0.7810 12 6 2.1975 -1.2687 -0.0006 13 6 1.8954 -2.1539 -1.2211 14 6 1.9129 -3.3524 -0.2576 15 7 0.8716 -4.3446 -0.5360 16 6 1.0455 -5.6466 -0.1492 17 1 1.9502 -5.9420 0.3615 18 6 0.0591 -6.5868 -0.4134 19 7 0.2261 -7.8381 -0.0411 20 14 -1.5052 -6.0761 -1.2974 21 1 -1.3175 -6.2267 -2.7627 22 1 -2.6296 -6.9375 -0.8513 23 1 -1.8123 -4.6581 -0.9808 24 6 1.5374 -2.3615 0.8568 25 1 -0.3633 0.0954 1.0232 26 1 -0.3634 0.8384 -0.5942 27 1 -0.3633 -0.9338 -0.4290 28 1 -0.2798 1.7877 1.1004 29 1 -1.4556 3.9404 0.9289 30 1 2.2441 6.3690 -0.9784 31 1 2.8835 3.4589 -1.2755 32 1 3.2624 -1.1438 0.1955 33 1 2.6997 -2.1731 -1.9564 34 1 0.9182 -1.9657 -1.6660 35 1 2.9001 -3.7971 -0.1320 36 1 0.0591 -4.0793 -0.9945 37 1 -0.4634 -8.4951 -0.2254 38 1 0.4624 -2.2299 0.9801 39 1 2.0528 -2.5481 1.7989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998615161.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:10 Heat of formation + Delta-G solvation = 19.633966 kcal Electronic energy + Delta-G solvation = -22636.047611 eV Core-core repulsion = 19160.202699 eV Total energy + Delta-G solvation = -3475.844911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26640 -40.00542 -38.27500 -37.37413 -35.20435 -33.51931 -32.63355 -30.84269 -30.47040 -27.42499 -25.89417 -25.32061 -24.04606 -23.78019 -22.13567 -20.38560 -19.23910 -18.82117 -17.71459 -17.47187 -16.95259 -16.66341 -16.28494 -15.65790 -15.50707 -14.88177 -14.70315 -14.37213 -13.97418 -13.54455 -13.45401 -13.29751 -12.77739 -12.72666 -12.32324 -12.29657 -12.05841 -11.89482 -11.82483 -11.07408 -10.85940 -10.64618 -10.47667 -10.29996 -10.24744 -10.09176 -9.73622 -9.63213 -9.39336 -9.00189 -8.72245 -7.36955 -5.85419 -3.22117 0.34338 0.53671 2.39787 2.70884 3.10140 3.28463 3.32210 3.37839 3.38706 3.97914 4.25197 4.45761 4.50253 4.55484 4.80015 4.85605 4.90657 4.94621 5.12921 5.20227 5.23377 5.29217 5.33713 5.43815 5.55290 5.59054 5.67443 5.92903 5.94608 6.03620 6.10165 6.17009 6.38122 6.53338 6.79393 7.02462 7.19223 7.42311 7.85227 7.90244 8.33881 9.10632 9.82874 10.01882 11.32642 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030593 B = 0.003163 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.034979 B = 8850.986462 C = 9342.282096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.587 5.587 3 C 0.556 3.444 4 O -0.529 6.529 5 C -0.063 4.063 6 C -0.162 4.162 7 C 0.121 3.879 8 N -0.492 5.492 9 C 0.308 3.692 10 O -0.479 6.479 11 C -0.134 4.134 12 C 0.115 3.885 13 C -0.167 4.167 14 C 0.176 3.824 15 N -0.733 5.733 16 C -0.250 4.250 17 H 0.092 0.908 18 C 0.006 3.994 19 N -0.931 5.931 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.278 1.278 24 C -0.174 4.174 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.156 0.844 29 H 0.168 0.832 30 H 0.403 0.597 31 H 0.150 0.850 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.083 0.917 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.425 24.851 0.933 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.318 5.318 3 C 0.343 3.657 4 O -0.406 6.406 5 C -0.074 4.074 6 C -0.182 4.182 7 C -0.035 4.035 8 N -0.212 5.212 9 C 0.129 3.871 10 O -0.287 6.287 11 C -0.156 4.156 12 C 0.013 3.987 13 C -0.207 4.207 14 C 0.064 3.936 15 N -0.373 5.373 16 C -0.380 4.380 17 H 0.110 0.890 18 C -0.190 4.190 19 N -0.578 5.578 20 Si 0.715 3.285 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.204 1.204 24 C -0.216 4.216 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.173 0.827 29 H 0.185 0.815 30 H 0.261 0.739 31 H 0.168 0.832 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.195 0.805 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.394 25.117 0.492 25.125 hybrid contribution -0.662 -0.228 -0.216 0.732 sum -1.055 24.889 0.275 24.913 Atomic orbital electron populations 1.22224 0.79626 1.04166 1.01785 1.47758 1.07048 1.05700 1.71303 1.18215 0.87043 0.83314 0.77168 1.90790 1.13197 1.87026 1.49614 1.20294 0.94763 0.94571 0.97819 1.22851 0.94569 1.00193 1.00626 1.22546 0.99484 0.87278 0.94225 1.67041 1.12362 1.33991 1.07761 1.19008 0.89140 0.87586 0.91336 1.84798 1.69220 1.37553 1.37094 1.22207 1.01362 0.92450 0.99551 1.22717 0.97579 0.79741 0.98700 1.23979 1.02012 0.97229 0.97449 1.21313 0.93805 0.86731 0.91732 1.42697 1.18185 1.06577 1.69833 1.19133 1.04109 0.83008 1.31782 0.89000 1.24702 0.98249 0.95326 1.00728 1.69700 1.34932 1.01446 1.51718 0.86553 0.84384 0.77504 0.80023 1.21010 1.21645 1.20433 1.24322 1.01045 0.96185 1.00043 0.91709 0.90730 0.89716 0.82658 0.81462 0.73948 0.83206 0.86264 0.91165 0.90214 0.89247 0.80496 0.92940 0.89890 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 7.55 59.84 0.45 1.04 16 2 N -0.59 -7.08 3.08 -174.00 -0.54 -7.61 16 3 C 0.56 7.22 7.44 -12.18 -0.09 7.13 16 4 O -0.53 -8.59 16.38 5.36 0.09 -8.50 16 5 C -0.06 -0.67 5.34 -104.67 -0.56 -1.22 16 6 C -0.16 -1.29 7.68 -39.03 -0.30 -1.59 16 7 C 0.12 0.94 11.17 -17.61 -0.20 0.74 16 8 N -0.49 -4.99 10.36 -13.38 -0.14 -5.13 16 9 C 0.31 3.07 7.74 -17.16 -0.13 2.94 16 10 O -0.48 -4.07 13.56 -18.74 -0.25 -4.32 16 11 C -0.13 -1.37 9.66 -38.84 -0.38 -1.74 16 12 C 0.12 1.58 4.22 -67.12 -0.28 1.30 16 13 C -0.17 -2.44 7.35 -25.92 -0.19 -2.63 16 14 C 0.18 3.12 4.48 -67.11 -0.30 2.82 16 15 N -0.73 -16.28 5.21 -52.63 -0.27 -16.56 16 16 C -0.25 -6.78 10.45 -15.06 -0.16 -6.94 16 17 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 19 N -0.93 -28.54 13.97 55.49 0.78 -27.76 16 20 Si 0.89 21.22 27.74 -169.99 -4.71 16.51 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 24 C -0.17 -2.62 7.28 -25.91 -0.19 -2.81 16 25 H 0.06 0.47 6.81 -51.93 -0.35 0.12 16 26 H 0.07 0.58 5.83 -51.93 -0.30 0.27 16 27 H 0.08 0.84 6.13 -51.93 -0.32 0.53 16 28 H 0.16 0.93 5.07 -52.49 -0.27 0.66 16 29 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 30 H 0.40 1.34 9.06 45.56 0.41 1.75 16 31 H 0.15 1.48 8.05 -52.48 -0.42 1.06 16 32 H 0.12 1.73 7.22 -51.93 -0.37 1.35 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.14 6.98 -51.93 -0.36 0.78 16 35 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 36 H 0.36 7.83 5.78 -40.82 -0.24 7.59 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.08 1.23 6.60 -51.93 -0.34 0.89 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 323.21 15.07 4.87 4.87 Total: -1.00 -34.60 323.21 -6.45 -41.05 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -3.85 Total: 8.35 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.42 Total: -0.89 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.17 Total: -57.06 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.17 Total: -12.82 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.51 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.60 -6.45 -41.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998615161.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.680 kcal (2) G-P(sol) polarization free energy of solvation -34.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds