Wall clock time and date at job start Tue Mar 31 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34777 * 120.00220 * 2 1 4 4 O 1.21510 * 120.00511 * 176.36181 * 3 2 1 5 5 C 1.48172 * 119.99732 * 356.36150 * 3 2 1 6 6 C 1.39962 * 120.88958 * 35.61985 * 5 3 2 7 7 C 1.37982 * 119.13231 * 179.97438 * 6 5 3 8 8 N 1.31903 * 120.97565 * 359.97438 * 7 6 5 9 9 C 1.32177 * 121.97474 * 0.02562 * 8 7 6 10 10 O 1.35678 * 119.62277 * 180.02562 * 9 8 7 11 11 C 1.38890 * 120.74948 * 359.73677 * 9 8 7 12 12 C 1.46498 * 120.00223 * 180.02562 * 2 1 3 13 13 C 1.53775 * 113.61626 * 59.99582 * 12 2 1 14 14 C 1.53782 * 87.08328 * 220.02140 * 13 12 2 15 15 N 1.46502 * 113.61735 * 139.97769 * 14 13 12 16 16 C 1.36937 * 120.00035 * 154.99815 * 15 14 13 17 17 H 1.07998 * 119.99847 * 0.02562 * 16 15 14 18 18 C 1.38806 * 119.99891 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99844 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00089 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47150 * 90.00346 * 20 18 16 22 22 H 1.48500 * 109.47131 * 210.00025 * 20 18 16 23 23 H 1.48499 * 109.47258 * 329.99995 * 20 18 16 24 24 C 1.53786 * 87.08152 * 25.43109 * 14 13 12 25 25 H 1.08999 * 109.47134 * 275.32517 * 1 2 3 26 26 H 1.08997 * 109.47343 * 35.32399 * 1 2 3 27 27 H 1.09002 * 109.47089 * 155.32531 * 1 2 3 28 28 H 1.07997 * 120.43587 * 359.95826 * 6 5 3 29 29 H 1.07996 * 119.51273 * 179.97438 * 7 6 5 30 30 H 0.96701 * 114.00509 * 89.99888 * 10 9 8 31 31 H 1.08005 * 120.52777 * 180.28790 * 11 9 8 32 32 H 1.08999 * 112.90874 * 191.25632 * 12 2 1 33 33 H 1.08998 * 113.61633 * 105.47542 * 13 12 2 34 34 H 1.09005 * 113.61684 * 334.56762 * 13 12 2 35 35 H 1.08999 * 113.61397 * 270.88735 * 14 13 12 36 36 H 0.96996 * 119.99986 * 335.00922 * 15 14 13 37 37 H 0.97001 * 119.99870 * 179.97438 * 19 18 16 38 38 H 1.09001 * 113.61065 * 89.11562 * 24 14 13 39 39 H 1.08992 * 113.61644 * 220.02159 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3521 1.1683 0.0668 5 6 1.4002 2.4491 -0.0814 6 6 0.1589 2.6042 0.5462 7 6 -0.4973 3.8140 0.4474 8 7 0.0287 4.8185 -0.2266 9 6 1.1978 4.7173 -0.8349 10 8 1.6944 5.7813 -1.5147 11 6 1.9264 3.5361 -0.7810 12 6 2.1975 -1.2687 -0.0006 13 6 1.8954 -2.1539 -1.2211 14 6 1.9129 -3.3524 -0.2576 15 7 0.8716 -4.3446 -0.5360 16 6 1.0455 -5.6466 -0.1492 17 1 1.9502 -5.9420 0.3615 18 6 0.0591 -6.5868 -0.4134 19 7 0.2261 -7.8381 -0.0411 20 14 -1.5052 -6.0761 -1.2974 21 1 -1.3175 -6.2267 -2.7627 22 1 -2.6296 -6.9375 -0.8513 23 1 -1.8123 -4.6581 -0.9808 24 6 1.5374 -2.3615 0.8568 25 1 -0.3633 0.0954 1.0232 26 1 -0.3634 0.8384 -0.5942 27 1 -0.3633 -0.9338 -0.4290 28 1 -0.2798 1.7877 1.1004 29 1 -1.4556 3.9404 0.9289 30 1 2.2441 6.3690 -0.9784 31 1 2.8835 3.4589 -1.2755 32 1 3.2624 -1.1438 0.1955 33 1 2.6997 -2.1731 -1.9564 34 1 0.9182 -1.9657 -1.6660 35 1 2.9001 -3.7971 -0.1320 36 1 0.0591 -4.0793 -0.9945 37 1 -0.4634 -8.4951 -0.2254 38 1 0.4624 -2.2299 0.9801 39 1 2.0528 -2.5481 1.7989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998615161.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:10 Heat of formation + Delta-G solvation = -8.855568 kcal Electronic energy + Delta-G solvation = -22637.283010 eV Core-core repulsion = 19160.202699 eV Total energy + Delta-G solvation = -3477.080310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.07870 -40.94398 -39.44994 -38.04795 -36.42679 -35.08624 -33.62101 -32.49401 -31.35878 -28.25089 -27.06905 -26.53883 -25.51410 -24.44431 -23.48303 -21.47352 -20.55736 -19.62935 -19.32894 -18.52592 -17.79436 -17.52757 -17.11939 -16.57859 -16.46370 -16.32437 -15.87977 -15.58512 -15.06115 -14.69551 -14.56432 -14.30017 -14.20024 -13.67184 -13.61659 -13.47186 -13.25186 -12.95288 -12.85141 -12.56807 -12.26510 -12.13752 -11.83825 -11.75853 -11.62264 -11.33427 -11.03950 -10.92730 -10.47911 -10.02541 -9.72994 -9.28894 -8.01104 -5.35372 -0.39175 -0.10198 1.38785 1.44247 1.49128 1.51366 1.78570 2.47150 2.50283 2.72028 3.16461 3.28758 3.58847 3.65751 3.73600 3.75772 3.84119 3.88315 4.05266 4.17032 4.20409 4.29775 4.56007 4.58194 4.63695 4.72511 4.76890 4.82264 4.89813 4.91562 5.02261 5.13222 5.31257 5.39705 5.55619 5.78578 6.21153 6.24595 6.53639 6.81494 6.88293 7.08618 7.83770 8.04025 9.20395 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030593 B = 0.003163 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.034979 B = 8850.986462 C = 9342.282096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.585 5.585 3 C 0.554 3.446 4 O -0.571 6.571 5 C -0.075 4.075 6 C -0.150 4.150 7 C 0.128 3.872 8 N -0.512 5.512 9 C 0.304 3.696 10 O -0.490 6.490 11 C -0.145 4.145 12 C 0.129 3.871 13 C -0.151 4.151 14 C 0.155 3.845 15 N -0.736 5.736 16 C -0.235 4.235 17 H 0.056 0.944 18 C -0.067 4.067 19 N -0.986 5.986 20 Si 0.957 3.043 21 H -0.282 1.282 22 H -0.298 1.298 23 H -0.242 1.242 24 C -0.160 4.160 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.181 0.819 29 H 0.205 0.795 30 H 0.422 0.578 31 H 0.143 0.857 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.369 0.631 37 H 0.257 0.743 38 H 0.094 0.906 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 27.533 0.805 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.315 5.315 3 C 0.343 3.657 4 O -0.451 6.451 5 C -0.086 4.086 6 C -0.169 4.169 7 C -0.029 4.029 8 N -0.231 5.231 9 C 0.126 3.874 10 O -0.301 6.301 11 C -0.167 4.167 12 C 0.025 3.975 13 C -0.191 4.191 14 C 0.045 3.955 15 N -0.377 5.377 16 C -0.366 4.366 17 H 0.074 0.926 18 C -0.258 4.258 19 N -0.636 5.636 20 Si 0.784 3.216 21 H -0.208 1.208 22 H -0.225 1.225 23 H -0.166 1.166 24 C -0.201 4.201 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.100 0.900 28 H 0.198 0.802 29 H 0.221 0.779 30 H 0.283 0.717 31 H 0.161 0.839 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.203 0.797 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.770 27.894 0.368 28.034 hybrid contribution 0.189 -1.003 -0.124 1.029 sum -2.582 26.890 0.243 27.015 Atomic orbital electron populations 1.22532 0.77433 1.04852 1.03818 1.47760 1.08333 1.04670 1.70691 1.18587 0.86667 0.84213 0.76221 1.90768 1.15121 1.87669 1.51580 1.20157 0.95875 0.93314 0.99296 1.23081 0.93188 1.01050 0.99622 1.23175 1.00335 0.86392 0.92993 1.67133 1.12443 1.35123 1.08441 1.19040 0.89273 0.87735 0.91367 1.84742 1.69691 1.37666 1.37981 1.22191 1.01433 0.92873 1.00252 1.22352 0.97237 0.80488 0.97456 1.23836 1.02880 0.95111 0.97300 1.21580 0.92268 0.86963 0.94674 1.42615 1.19530 1.05422 1.70162 1.19083 1.02410 0.85222 1.29842 0.92633 1.25569 1.02415 0.95223 1.02591 1.69898 1.36350 1.03042 1.54314 0.85383 0.79115 0.78824 0.78272 1.20810 1.22541 1.16607 1.24115 1.01787 0.95163 0.99010 0.89170 0.88904 0.90023 0.80235 0.77878 0.71668 0.83898 0.87309 0.90875 0.88930 0.90674 0.79749 0.93387 0.88772 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.77 7.55 127.77 0.96 1.74 16 2 N -0.58 -12.58 3.08 -822.72 -2.54 -15.12 16 3 C 0.55 13.55 7.44 86.88 0.65 14.20 16 4 O -0.57 -18.43 16.38 -3.75 -0.06 -18.50 16 5 C -0.08 -1.43 5.34 -19.90 -0.11 -1.53 16 6 C -0.15 -1.82 7.68 22.63 0.17 -1.64 16 7 C 0.13 1.48 11.17 84.62 0.94 2.42 16 8 N -0.51 -9.03 10.36 -309.15 -3.20 -12.23 16 9 C 0.30 5.59 7.74 84.80 0.66 6.24 16 10 O -0.49 -7.74 13.56 -89.96 -1.22 -8.96 16 11 C -0.15 -2.83 9.66 22.75 0.22 -2.61 16 12 C 0.13 3.30 4.22 45.52 0.19 3.50 16 13 C -0.15 -4.14 7.35 31.12 0.23 -3.91 16 14 C 0.16 5.36 4.48 45.52 0.20 5.56 16 15 N -0.74 -31.79 5.21 -320.44 -1.67 -33.46 16 16 C -0.23 -12.86 10.45 84.03 0.88 -11.98 16 17 H 0.06 3.38 8.06 -2.91 -0.02 3.35 16 18 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 19 N -0.99 -62.18 13.97 21.65 0.30 -61.88 16 20 Si 0.96 43.24 27.74 68.60 1.90 45.14 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.24 -9.37 6.52 99.48 0.65 -8.72 16 24 C -0.16 -4.50 7.28 31.12 0.23 -4.28 16 25 H 0.09 0.85 6.81 -2.39 -0.02 0.83 16 26 H 0.09 1.01 5.83 -2.39 -0.01 0.99 16 27 H 0.08 1.26 6.13 -2.39 -0.01 1.24 16 28 H 0.18 1.23 5.07 -2.91 -0.01 1.21 16 29 H 0.20 0.78 8.06 -2.91 -0.02 0.76 16 30 H 0.42 2.33 9.06 -74.06 -0.67 1.66 16 31 H 0.14 2.86 8.05 -2.91 -0.02 2.83 16 32 H 0.11 3.09 7.22 -2.39 -0.02 3.07 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.09 2.33 6.98 -2.38 -0.02 2.32 16 35 H 0.08 2.78 8.10 -2.39 -0.02 2.76 16 36 H 0.37 14.89 5.78 -92.71 -0.54 14.35 16 37 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.09 2.48 6.60 -2.39 -0.02 2.47 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -77.04 323.21 -0.94 -77.98 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -0.15 Total: 22.67 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 5.70 Total: 4.36 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -7.10 Total: -122.68 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -1.28 Total: -27.45 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.90 Total: 45.14 kcal Total: -77.04 -0.94 -77.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998615161.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.121 kcal (2) G-P(sol) polarization free energy of solvation -77.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds