Wall clock time and date at job start Tue Mar 31 2020 06:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35503 * 117.00245 * 2 1 4 4 C 1.39163 * 119.52891 * 179.97438 * 3 2 1 5 5 C 1.37951 * 119.26404 * 179.97438 * 4 3 2 6 6 C 1.40292 * 118.35670 * 359.97438 * 5 4 3 7 7 C 1.47616 * 120.49607 * 180.02562 * 6 5 4 8 8 O 1.21579 * 120.00327 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99656 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99823 * 179.97438 * 9 7 6 11 11 H 1.08992 * 110.78141 * 323.21146 * 10 9 7 12 12 C 1.55402 * 110.69614 * 199.81662 * 10 9 7 13 13 C 1.54912 * 101.66710 * 277.05274 * 12 10 9 14 14 N 1.47422 * 104.83277 * 323.07103 * 13 12 10 15 15 C 1.36938 * 125.65356 * 204.16946 * 14 13 12 16 16 H 1.07998 * 120.00117 * 161.47874 * 15 14 13 17 17 C 1.38813 * 119.99506 * 341.47432 * 15 14 13 18 18 N 1.31618 * 119.99951 * 157.61423 * 17 15 14 19 19 Si 1.86794 * 120.00222 * 337.61816 * 17 15 14 20 20 H 1.48507 * 109.47423 * 84.53407 * 19 17 15 21 21 H 1.48497 * 109.47192 * 204.53458 * 19 17 15 22 22 H 1.48505 * 109.47132 * 324.53466 * 19 17 15 23 23 C 1.47031 * 108.70183 * 24.12999 * 14 13 12 24 24 C 1.39518 * 119.00032 * 0.27434 * 6 5 4 25 25 N 1.31668 * 120.63002 * 359.42961 * 24 6 5 26 26 H 1.09000 * 109.46993 * 180.02562 * 1 2 3 27 27 H 1.08988 * 109.47380 * 299.99878 * 1 2 3 28 28 H 1.08998 * 109.47076 * 60.00358 * 1 2 3 29 29 H 1.08001 * 120.37007 * 359.97438 * 4 3 2 30 30 H 1.07999 * 120.82511 * 179.97438 * 5 4 3 31 31 H 0.96998 * 120.00000 * 359.97438 * 9 7 6 32 32 H 1.09000 * 110.89391 * 158.97742 * 12 10 9 33 33 H 1.09002 * 111.03507 * 35.18398 * 12 10 9 34 34 H 1.08998 * 110.36339 * 204.23690 * 13 12 10 35 35 H 1.09001 * 110.46205 * 81.95945 * 13 12 10 36 36 H 0.96997 * 120.00534 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.88159 * 118.35686 * 23 14 13 38 38 H 1.08994 * 109.88220 * 239.36696 * 23 14 13 39 39 H 1.08002 * 119.68652 * 179.72998 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2687 0.0005 5 6 4.0551 2.5007 0.0000 6 6 3.2523 3.6512 -0.0016 7 6 3.8668 4.9934 -0.0028 8 8 5.0772 5.1079 -0.0020 9 7 3.0859 6.0919 -0.0039 10 6 3.6957 7.4240 -0.0045 11 1 4.5984 7.4363 0.6061 12 6 2.6806 8.4929 0.4872 13 6 1.8835 8.7873 -0.8081 14 7 2.8836 8.7235 -1.8894 15 6 2.7852 9.3453 -3.1055 16 1 3.6683 9.4939 -3.7090 17 6 1.5502 9.7844 -3.5624 18 7 1.4844 10.7369 -4.4683 19 14 -0.0184 9.0237 -2.8914 20 1 -0.3946 9.7012 -1.6245 21 1 -1.1113 9.1868 -3.8834 22 1 0.2037 7.5783 -2.6327 23 6 4.0049 7.8823 -1.4454 24 6 1.8645 3.5077 0.0032 25 7 1.3138 2.3117 -0.0021 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.0210 0.3618 0.0014 30 1 5.1323 2.5777 0.0008 31 1 2.1203 6.0005 -0.0042 32 1 3.1966 9.3859 0.8399 33 1 2.0303 8.0876 1.2624 34 1 1.4380 9.7810 -0.7618 35 1 1.1116 8.0329 -0.9603 36 1 0.6214 11.0441 -4.7874 37 1 4.0985 7.0146 -2.0983 38 1 4.9296 8.4590 -1.4606 39 1 1.2360 4.3859 0.0064 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015181636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:33 Heat of formation + Delta-G solvation = 0.173662 kcal Electronic energy + Delta-G solvation = -22900.392522 eV Core-core repulsion = 19423.703748 eV Total energy + Delta-G solvation = -3476.688774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.09266 -39.73548 -38.16184 -37.35824 -34.10757 -32.81508 -32.23973 -31.12243 -29.52429 -28.16583 -27.49602 -24.71507 -24.15091 -23.43830 -21.20898 -20.93752 -19.94840 -18.82218 -17.93212 -17.44525 -16.81814 -16.38117 -15.95569 -15.27241 -15.15649 -14.88527 -14.66041 -14.24840 -14.13013 -13.65174 -13.46950 -13.29648 -13.07428 -13.00414 -12.26654 -12.20300 -11.69405 -11.59879 -11.47121 -11.18492 -11.06659 -10.98379 -10.32927 -10.26918 -10.15806 -10.05207 -9.73771 -9.47035 -9.02531 -8.77528 -8.71096 -7.06567 -5.95652 -3.26034 0.47969 0.89698 2.69994 2.78515 3.16657 3.29902 3.42940 3.46243 3.63164 3.86987 4.49840 4.52069 4.58304 4.73036 4.79788 4.93283 4.96964 4.99281 5.00265 5.26698 5.27987 5.28821 5.38407 5.49763 5.54123 5.80408 5.84149 5.97781 6.01177 6.11387 6.23942 6.50643 6.58238 6.64642 6.80708 6.85172 7.40990 7.53582 7.70433 8.22909 8.30351 8.82614 9.67325 10.15253 11.20682 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018460 B = 0.004145 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.389571 B = 6753.024148 C = 7668.936552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.305 6.305 3 C 0.338 3.662 4 C -0.197 4.197 5 C 0.017 3.983 6 C -0.221 4.221 7 C 0.569 3.431 8 O -0.538 6.538 9 N -0.710 5.710 10 C 0.131 3.869 11 H 0.098 0.902 12 C -0.138 4.138 13 C 0.108 3.892 14 N -0.608 5.608 15 C -0.241 4.241 16 H 0.092 0.908 17 C 0.021 3.979 18 N -0.909 5.909 19 Si 0.884 3.116 20 H -0.285 1.285 21 H -0.303 1.303 22 H -0.278 1.278 23 C 0.126 3.874 24 C 0.180 3.820 25 N -0.543 5.543 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.149 0.851 30 H 0.156 0.844 31 H 0.397 0.603 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.022 0.978 36 H 0.263 0.737 37 H 0.036 0.964 38 H 0.043 0.957 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 -18.821 13.353 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.211 6.211 3 C 0.160 3.840 4 C -0.218 4.218 5 C -0.008 4.008 6 C -0.227 4.227 7 C 0.355 3.645 8 O -0.416 6.416 9 N -0.360 5.360 10 C 0.027 3.973 11 H 0.116 0.884 12 C -0.177 4.177 13 C -0.017 4.017 14 N -0.335 5.335 15 C -0.368 4.368 16 H 0.110 0.890 17 C -0.178 4.178 18 N -0.553 5.553 19 Si 0.714 3.286 20 H -0.212 1.212 21 H -0.231 1.231 22 H -0.204 1.204 23 C 0.000 4.000 24 C 0.022 3.978 25 N -0.266 5.266 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.167 0.833 30 H 0.174 0.826 31 H 0.232 0.768 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.706 -18.941 13.141 23.064 hybrid contribution -1.001 -0.265 0.103 1.041 sum -1.707 -19.206 13.244 23.392 Atomic orbital electron populations 1.22928 0.76772 1.03171 1.02864 1.86211 1.23342 1.24485 1.87057 1.20106 0.89540 0.84743 0.89656 1.21048 0.91782 0.99651 1.09294 1.21541 1.01378 0.89603 0.88313 1.20876 0.94961 0.95066 1.11769 1.17808 0.86669 0.83610 0.76402 1.90776 1.13622 1.86943 1.50238 1.45920 1.09953 1.05797 1.74379 1.22090 0.96747 0.80350 0.98135 0.88373 1.23111 0.98111 0.98457 0.98021 1.21982 0.92615 0.99857 0.87263 1.44797 1.19100 1.56360 1.13239 1.18658 0.94826 1.29986 0.93296 0.89010 1.25003 0.97237 0.98277 0.97245 1.69841 1.24932 1.27053 1.33428 0.86957 0.84254 0.80149 0.77194 1.21219 1.23074 1.20435 1.21754 0.92192 0.94012 0.92042 1.22649 0.91714 0.93946 0.89502 1.67320 1.40538 0.98619 1.20145 0.88437 0.92034 0.91926 0.83331 0.82636 0.76755 0.89373 0.90937 0.91951 0.96019 0.92712 0.94639 0.93860 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.37 101.05 1.05 1.33 16 2 O -0.30 -3.12 10.46 -18.20 -0.19 -3.31 16 3 C 0.34 3.81 7.49 -16.96 -0.13 3.69 16 4 C -0.20 -1.96 10.02 -39.34 -0.39 -2.36 16 5 C 0.02 0.19 9.70 -38.91 -0.38 -0.19 16 6 C -0.22 -2.74 5.89 -104.82 -0.62 -3.36 16 7 C 0.57 8.39 7.77 -12.43 -0.10 8.30 16 8 O -0.54 -9.46 16.14 5.30 0.09 -9.37 16 9 N -0.71 -10.12 5.07 -52.92 -0.27 -10.39 16 10 C 0.13 2.08 3.27 -65.96 -0.22 1.87 16 11 H 0.10 1.49 7.70 -51.93 -0.40 1.09 16 12 C -0.14 -2.08 6.65 -24.45 -0.16 -2.25 16 13 C 0.11 2.20 4.68 -2.53 -0.01 2.19 16 14 N -0.61 -14.43 3.21 -170.07 -0.55 -14.98 16 15 C -0.24 -6.83 10.57 -15.06 -0.16 -6.98 16 16 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 17 C 0.02 0.60 5.43 -17.43 -0.09 0.51 16 18 N -0.91 -28.01 13.97 55.49 0.78 -27.24 16 19 Si 0.88 22.14 24.27 -169.99 -4.13 18.01 16 20 H -0.29 -6.77 6.49 56.52 0.37 -6.41 16 21 H -0.30 -7.76 7.11 56.52 0.40 -7.35 16 22 H -0.28 -6.78 6.66 56.52 0.38 -6.40 16 23 C 0.13 2.55 6.97 -3.06 -0.02 2.53 16 24 C 0.18 2.07 10.71 -17.15 -0.18 1.89 16 25 N -0.54 -6.49 9.18 -12.97 -0.12 -6.61 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.46 8.10 -51.94 -0.42 0.04 16 28 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 29 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.16 1.55 7.73 -52.49 -0.41 1.14 16 31 H 0.40 4.95 6.67 -40.82 -0.27 4.68 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.37 6.64 -51.93 -0.34 1.02 16 35 H 0.02 0.45 5.57 -51.93 -0.29 0.16 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.04 0.77 8.04 -51.93 -0.42 0.35 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.16 1.57 6.41 -52.49 -0.34 1.23 16 LS Contribution 324.03 15.07 4.88 4.88 Total: -1.00 -34.04 324.03 -5.96 -40.00 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.04 Total: 1.85 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -1.41 Total: 7.15 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.16 Total: -59.21 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.10 Total: -12.68 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.13 Total: 18.01 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.04 -5.96 -40.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015181636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.174 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds