Wall clock time and date at job start Tue Mar 31 2020 06:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35503 * 117.00245 * 2 1 4 4 C 1.39163 * 119.52891 * 179.97438 * 3 2 1 5 5 C 1.37951 * 119.26404 * 179.97438 * 4 3 2 6 6 C 1.40292 * 118.35670 * 359.97438 * 5 4 3 7 7 C 1.47616 * 120.49607 * 180.02562 * 6 5 4 8 8 O 1.21579 * 120.00327 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99656 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99823 * 179.97438 * 9 7 6 11 11 H 1.08992 * 110.78141 * 323.21146 * 10 9 7 12 12 C 1.55402 * 110.69614 * 199.81662 * 10 9 7 13 13 C 1.54912 * 101.66710 * 277.05274 * 12 10 9 14 14 N 1.47422 * 104.83277 * 323.07103 * 13 12 10 15 15 C 1.36938 * 125.65356 * 204.16946 * 14 13 12 16 16 H 1.07998 * 120.00117 * 161.47874 * 15 14 13 17 17 C 1.38813 * 119.99506 * 341.47432 * 15 14 13 18 18 N 1.31618 * 119.99951 * 157.61423 * 17 15 14 19 19 Si 1.86794 * 120.00222 * 337.61816 * 17 15 14 20 20 H 1.48507 * 109.47423 * 84.53407 * 19 17 15 21 21 H 1.48497 * 109.47192 * 204.53458 * 19 17 15 22 22 H 1.48505 * 109.47132 * 324.53466 * 19 17 15 23 23 C 1.47031 * 108.70183 * 24.12999 * 14 13 12 24 24 C 1.39518 * 119.00032 * 0.27434 * 6 5 4 25 25 N 1.31668 * 120.63002 * 359.42961 * 24 6 5 26 26 H 1.09000 * 109.46993 * 180.02562 * 1 2 3 27 27 H 1.08988 * 109.47380 * 299.99878 * 1 2 3 28 28 H 1.08998 * 109.47076 * 60.00358 * 1 2 3 29 29 H 1.08001 * 120.37007 * 359.97438 * 4 3 2 30 30 H 1.07999 * 120.82511 * 179.97438 * 5 4 3 31 31 H 0.96998 * 120.00000 * 359.97438 * 9 7 6 32 32 H 1.09000 * 110.89391 * 158.97742 * 12 10 9 33 33 H 1.09002 * 111.03507 * 35.18398 * 12 10 9 34 34 H 1.08998 * 110.36339 * 204.23690 * 13 12 10 35 35 H 1.09001 * 110.46205 * 81.95945 * 13 12 10 36 36 H 0.96997 * 120.00534 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.88159 * 118.35686 * 23 14 13 38 38 H 1.08994 * 109.88220 * 239.36696 * 23 14 13 39 39 H 1.08002 * 119.68652 * 179.72998 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2687 0.0005 5 6 4.0551 2.5007 0.0000 6 6 3.2523 3.6512 -0.0016 7 6 3.8668 4.9934 -0.0028 8 8 5.0772 5.1079 -0.0020 9 7 3.0859 6.0919 -0.0039 10 6 3.6957 7.4240 -0.0045 11 1 4.5984 7.4363 0.6061 12 6 2.6806 8.4929 0.4872 13 6 1.8835 8.7873 -0.8081 14 7 2.8836 8.7235 -1.8894 15 6 2.7852 9.3453 -3.1055 16 1 3.6683 9.4939 -3.7090 17 6 1.5502 9.7844 -3.5624 18 7 1.4844 10.7369 -4.4683 19 14 -0.0184 9.0237 -2.8914 20 1 -0.3946 9.7012 -1.6245 21 1 -1.1113 9.1868 -3.8834 22 1 0.2037 7.5783 -2.6327 23 6 4.0049 7.8823 -1.4454 24 6 1.8645 3.5077 0.0032 25 7 1.3138 2.3117 -0.0021 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.0210 0.3618 0.0014 30 1 5.1323 2.5777 0.0008 31 1 2.1203 6.0005 -0.0042 32 1 3.1966 9.3859 0.8399 33 1 2.0303 8.0876 1.2624 34 1 1.4380 9.7810 -0.7618 35 1 1.1116 8.0329 -0.9603 36 1 0.6214 11.0441 -4.7874 37 1 4.0985 7.0146 -2.0983 38 1 4.9296 8.4590 -1.4606 39 1 1.2360 4.3859 0.0064 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015181636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:32 Heat of formation + Delta-G solvation = -26.886551 kcal Electronic energy + Delta-G solvation = -22901.565941 eV Core-core repulsion = 19423.703748 eV Total energy + Delta-G solvation = -3477.862192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97710 -40.85820 -39.28200 -38.54499 -35.60614 -34.05675 -33.66632 -32.27851 -31.04976 -29.57961 -28.29993 -26.32062 -25.29708 -24.33321 -22.65922 -22.28113 -21.35805 -19.64083 -19.16706 -18.68368 -18.24608 -17.23266 -17.14813 -17.12539 -16.13946 -16.07535 -15.74086 -15.45012 -15.21559 -15.15217 -14.89901 -14.33739 -14.25649 -13.95093 -13.89514 -13.41198 -13.26256 -12.97328 -12.79889 -12.67555 -12.35354 -12.23151 -12.01797 -11.82987 -11.44006 -11.31029 -11.11161 -10.81994 -10.72622 -10.22681 -9.67050 -9.06505 -8.17865 -5.45539 -0.41449 0.08234 1.30328 1.40383 1.49585 1.74319 1.96617 2.07545 2.41943 2.71323 3.04370 3.07817 3.31719 3.57410 3.65932 3.74186 3.87175 3.93759 4.02494 4.20226 4.41515 4.41685 4.42203 4.52619 4.57502 4.65955 4.77434 4.81403 4.90338 4.94321 4.98560 5.03097 5.18803 5.21652 5.50656 5.66737 6.04504 6.09146 6.43964 6.57938 6.75781 7.11640 7.52900 8.08050 9.02284 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018460 B = 0.004145 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.389571 B = 6753.024148 C = 7668.936552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.330 3.670 4 C -0.191 4.191 5 C 0.015 3.985 6 C -0.235 4.235 7 C 0.571 3.429 8 O -0.571 6.571 9 N -0.704 5.704 10 C 0.145 3.855 11 H 0.112 0.888 12 C -0.118 4.118 13 C 0.097 3.903 14 N -0.624 5.624 15 C -0.240 4.240 16 H 0.050 0.950 17 C -0.040 4.040 18 N -0.960 5.960 19 Si 0.953 3.047 20 H -0.259 1.259 21 H -0.312 1.312 22 H -0.264 1.264 23 C 0.123 3.877 24 C 0.181 3.819 25 N -0.555 5.555 26 H 0.126 0.874 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.174 0.826 30 H 0.162 0.838 31 H 0.408 0.592 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.046 0.954 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.015 0.985 38 H 0.035 0.965 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 -20.938 15.989 26.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.216 6.216 3 C 0.151 3.849 4 C -0.212 4.212 5 C -0.010 4.010 6 C -0.241 4.241 7 C 0.359 3.641 8 O -0.452 6.452 9 N -0.356 5.356 10 C 0.040 3.960 11 H 0.129 0.871 12 C -0.156 4.156 13 C -0.027 4.027 14 N -0.351 5.351 15 C -0.369 4.369 16 H 0.068 0.932 17 C -0.234 4.234 18 N -0.606 5.606 19 Si 0.781 3.219 20 H -0.184 1.184 21 H -0.241 1.241 22 H -0.189 1.189 23 C -0.003 4.003 24 C 0.023 3.977 25 N -0.279 5.279 26 H 0.144 0.856 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.191 0.809 30 H 0.180 0.820 31 H 0.246 0.754 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.053 0.947 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.127 -21.096 15.828 26.459 hybrid contribution -0.477 0.338 -0.768 0.965 sum -2.603 -20.759 15.060 25.778 Atomic orbital electron populations 1.23142 0.75440 1.05004 1.02548 1.86215 1.24691 1.23964 1.86729 1.20414 0.90190 0.84973 0.89274 1.21283 0.91578 1.00186 1.08117 1.21693 1.01753 0.89645 0.87915 1.20751 0.95557 0.94126 1.13688 1.18115 0.86245 0.84400 0.75328 1.90759 1.15094 1.87474 1.51840 1.45831 1.10557 1.05089 1.74085 1.21882 0.97901 0.81330 0.94877 0.87052 1.23074 0.97576 0.98713 0.96255 1.22183 0.92726 0.99223 0.88585 1.44854 1.20889 1.56726 1.12668 1.18552 0.93660 1.29718 0.94964 0.93202 1.25720 1.00801 0.98567 0.98317 1.69986 1.25692 1.28916 1.36027 0.85853 0.79013 0.79838 0.77245 1.18447 1.24086 1.18910 1.21862 0.90975 0.92694 0.94755 1.22875 0.91498 0.94477 0.88826 1.67356 1.40879 0.98891 1.20735 0.85631 0.91999 0.92535 0.80875 0.82026 0.75442 0.88222 0.86562 0.93533 0.95158 0.92847 0.96639 0.94665 0.80322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.37 113.37 1.18 1.60 16 2 O -0.31 -5.63 10.46 -88.05 -0.92 -6.55 16 3 C 0.33 6.73 7.49 84.83 0.64 7.36 16 4 C -0.19 -3.38 10.02 22.42 0.22 -3.15 16 5 C 0.02 0.31 9.70 22.70 0.22 0.53 16 6 C -0.24 -5.41 5.89 -19.99 -0.12 -5.53 16 7 C 0.57 15.86 7.77 86.72 0.67 16.54 16 8 O -0.57 -19.52 16.14 -3.96 -0.06 -19.58 16 9 N -0.70 -18.20 5.07 -439.59 -2.23 -20.42 16 10 C 0.15 4.24 3.27 46.27 0.15 4.39 16 11 H 0.11 3.07 7.70 -2.39 -0.02 3.05 16 12 C -0.12 -3.08 6.65 32.07 0.21 -2.87 16 13 C 0.10 3.69 4.68 86.86 0.41 4.10 16 14 N -0.62 -29.51 3.21 -691.97 -2.22 -31.73 16 15 C -0.24 -14.06 10.57 84.03 0.89 -13.17 16 16 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 17 C -0.04 -2.35 5.43 84.86 0.46 -1.89 16 18 N -0.96 -61.12 13.97 21.65 0.30 -60.82 16 19 Si 0.95 45.49 24.27 68.60 1.66 47.16 16 20 H -0.26 -11.22 6.49 99.48 0.65 -10.58 16 21 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 22 H -0.26 -11.85 6.66 99.48 0.66 -11.19 16 23 C 0.12 4.94 6.97 86.73 0.60 5.55 16 24 C 0.18 3.76 10.71 85.03 0.91 4.67 16 25 N -0.55 -12.05 9.18 -307.82 -2.82 -14.88 16 26 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.80 8.10 -2.39 -0.02 0.78 16 28 H 0.06 0.80 8.10 -2.39 -0.02 0.78 16 29 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 30 H 0.16 2.99 7.73 -2.91 -0.02 2.97 16 31 H 0.41 8.70 6.67 -92.71 -0.62 8.08 16 32 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 1.93 6.64 -2.39 -0.02 1.91 16 35 H 0.03 1.13 5.57 -2.39 -0.01 1.12 16 36 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.02 0.68 8.04 -2.39 -0.02 0.66 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.18 2.91 6.41 -2.91 -0.02 2.89 16 Total: -1.00 -76.17 324.03 0.51 -75.66 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.35 Total: 13.04 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 6.45 Total: 18.11 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -6.97 Total: -127.85 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.99 Total: -26.13 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.66 Total: 47.16 kcal Total: -76.17 0.51 -75.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015181636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.776 kcal (2) G-P(sol) polarization free energy of solvation -76.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds