Wall clock time and date at job start Tue Mar 31 2020 06:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35498 * 116.99598 * 2 1 4 4 C 1.39170 * 119.52618 * 179.97438 * 3 2 1 5 5 C 1.37950 * 119.26642 * 179.97438 * 4 3 2 6 6 C 1.40277 * 118.35746 * 359.97438 * 5 4 3 7 7 C 1.47618 * 120.49936 * 180.02562 * 6 5 4 8 8 O 1.21585 * 119.99991 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00151 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.77975 * 36.78970 * 10 9 7 12 12 C 1.55156 * 110.71794 * 160.02588 * 10 9 7 13 13 C 1.55130 * 101.48324 * 82.69757 * 12 10 9 14 14 N 1.47424 * 104.72156 * 37.29713 * 13 12 10 15 15 C 1.36934 * 125.64535 * 155.82192 * 14 13 12 16 16 H 1.08012 * 119.99766 * 192.91762 * 15 14 13 17 17 C 1.38807 * 120.00605 * 12.90828 * 15 14 13 18 18 N 1.31616 * 120.00452 * 204.24780 * 17 15 14 19 19 Si 1.86800 * 119.99884 * 24.52153 * 17 15 14 20 20 H 1.48498 * 109.47398 * 269.72901 * 19 17 15 21 21 H 1.48504 * 109.46962 * 29.72422 * 19 17 15 22 22 H 1.48500 * 109.47439 * 149.72286 * 19 17 15 23 23 C 1.47017 * 108.70268 * 335.54772 * 14 13 12 24 24 C 1.39520 * 119.00468 * 0.28084 * 6 5 4 25 25 N 1.31666 * 120.62532 * 359.42825 * 24 6 5 26 26 H 1.09002 * 109.46811 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47250 * 300.00423 * 1 2 3 28 28 H 1.09005 * 109.47033 * 60.00130 * 1 2 3 29 29 H 1.08005 * 120.36455 * 359.97438 * 4 3 2 30 30 H 1.08007 * 120.81835 * 179.97438 * 5 4 3 31 31 H 0.97003 * 119.99671 * 0.02562 * 9 7 6 32 32 H 1.08998 * 111.00575 * 200.93697 * 12 10 9 33 33 H 1.08999 * 111.00739 * 324.75094 * 12 10 9 34 34 H 1.08997 * 110.49687 * 278.45236 * 13 12 10 35 35 H 1.09000 * 110.34329 * 156.05842 * 13 12 10 36 36 H 0.96996 * 119.99877 * 354.85650 * 18 17 15 37 37 H 1.09001 * 109.88097 * 120.70582 * 23 14 13 38 38 H 1.09002 * 109.88666 * 241.87183 * 23 14 13 39 39 H 1.08006 * 119.68838 * 179.72317 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4344 1.2688 0.0005 5 6 4.0551 2.5008 0.0000 6 6 3.2523 3.6512 -0.0016 7 6 3.8667 4.9934 -0.0028 8 8 5.0772 5.1080 -0.0029 9 7 3.0859 6.0920 -0.0049 10 6 3.6957 7.4241 -0.0067 11 1 4.5990 7.4351 -0.6166 12 6 2.6842 8.4901 -0.5046 13 6 1.8802 8.7813 0.7897 14 7 2.8796 8.7258 1.8721 15 6 2.7755 9.3486 3.0871 16 1 3.6393 9.4238 3.7312 17 6 1.5601 9.8836 3.4910 18 7 1.5313 10.8599 4.3733 19 14 -0.0354 9.2128 2.7881 20 1 -0.3961 9.9738 1.5651 21 1 0.1392 7.7785 2.4451 22 1 -1.1176 9.3527 3.7954 23 6 4.0035 7.8856 1.4333 24 6 1.8645 3.5077 0.0033 25 7 1.3138 2.3118 -0.0018 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.0210 0.3619 0.0014 30 1 5.1324 2.5777 0.0008 31 1 2.1202 6.0007 -0.0053 32 1 3.1999 9.3832 -0.8574 33 1 2.0375 8.0824 -1.2815 34 1 1.1136 8.0215 0.9419 35 1 1.4289 9.7722 0.7407 36 1 2.3525 11.1551 4.7969 37 1 4.9268 8.4647 1.4476 38 1 4.0966 7.0193 2.0883 39 1 1.2360 4.3861 0.0067 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015181644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:35 Heat of formation + Delta-G solvation = -2.306159 kcal Electronic energy + Delta-G solvation = -22895.965931 eV Core-core repulsion = 19419.169624 eV Total energy + Delta-G solvation = -3476.796307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.09331 -39.73592 -38.15999 -37.35179 -34.11732 -32.81687 -32.30286 -31.10855 -29.39803 -28.15322 -27.47754 -24.60783 -23.94232 -23.37975 -21.21948 -20.86252 -19.85651 -18.82234 -17.95513 -17.50307 -17.23758 -16.38049 -15.96098 -15.29262 -15.15593 -14.79608 -14.65634 -14.23099 -14.16614 -13.63497 -13.44180 -13.36183 -13.09994 -13.01504 -12.20526 -12.13022 -12.05060 -11.51461 -11.26552 -11.17000 -11.04669 -10.90186 -10.31406 -10.27193 -10.06535 -9.75856 -9.60603 -9.26223 -9.03340 -8.78073 -8.51309 -7.08494 -6.32243 -3.20644 0.47903 0.89582 2.69998 2.78415 3.16729 3.36635 3.47350 3.62918 3.63447 3.87069 4.49850 4.57304 4.58303 4.73146 4.80105 4.94533 4.99633 5.00603 5.00882 5.27938 5.29015 5.29382 5.41720 5.50679 5.56412 5.80579 5.85548 5.98065 6.01207 6.12168 6.24323 6.48394 6.57967 6.65920 6.80746 6.85661 7.40951 7.53933 7.72664 8.22976 8.34570 9.04167 9.58337 10.25434 11.15821 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018772 B = 0.004088 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.222646 B = 6847.329948 C = 7734.309506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.305 6.305 3 C 0.338 3.662 4 C -0.197 4.197 5 C 0.017 3.983 6 C -0.221 4.221 7 C 0.568 3.432 8 O -0.539 6.539 9 N -0.709 5.709 10 C 0.132 3.868 11 H 0.096 0.904 12 C -0.138 4.138 13 C 0.102 3.898 14 N -0.607 5.607 15 C -0.326 4.326 16 H 0.075 0.925 17 C -0.022 4.022 18 N -0.923 5.923 19 Si 1.067 2.933 20 H -0.294 1.294 21 H -0.288 1.288 22 H -0.299 1.299 23 C 0.126 3.874 24 C 0.180 3.820 25 N -0.542 5.542 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.149 0.851 30 H 0.156 0.844 31 H 0.398 0.602 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.063 0.937 36 H 0.263 0.737 37 H 0.038 0.962 38 H 0.032 0.968 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -19.431 -13.263 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.211 6.211 3 C 0.160 3.840 4 C -0.218 4.218 5 C -0.009 4.009 6 C -0.227 4.227 7 C 0.355 3.645 8 O -0.417 6.417 9 N -0.360 5.360 10 C 0.027 3.973 11 H 0.114 0.886 12 C -0.177 4.177 13 C -0.023 4.023 14 N -0.335 5.335 15 C -0.453 4.453 16 H 0.093 0.907 17 C -0.222 4.222 18 N -0.564 5.564 19 Si 0.900 3.100 20 H -0.221 1.221 21 H -0.216 1.216 22 H -0.227 1.227 23 C 0.000 4.000 24 C 0.022 3.978 25 N -0.266 5.266 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.167 0.833 30 H 0.173 0.827 31 H 0.233 0.767 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.377 -19.441 -13.158 23.595 hybrid contribution 1.722 -0.127 0.185 1.736 sum -0.655 -19.568 -12.973 23.487 Atomic orbital electron populations 1.22934 0.76751 1.03175 1.02883 1.86212 1.23363 1.24476 1.87049 1.20105 0.89530 0.84753 0.89638 1.21049 0.91800 0.99634 1.09319 1.21535 1.01368 0.89623 0.88336 1.20871 0.94989 0.95026 1.11801 1.17821 0.86669 0.83631 0.76403 1.90776 1.13668 1.86961 1.50282 1.45913 1.09963 1.05761 1.74344 1.22027 0.96740 0.80397 0.98110 0.88565 1.23101 0.98119 0.98412 0.98038 1.22090 0.92869 1.00046 0.87312 1.44820 1.18579 1.56676 1.13435 1.20051 0.97311 1.33680 0.94307 0.90742 1.25882 1.00402 0.96452 0.99480 1.70893 1.31264 1.22780 1.31423 0.83807 0.75994 0.75564 0.74681 1.22149 1.21552 1.22713 1.21728 0.92331 0.93925 0.92044 1.22659 0.91691 0.93966 0.89452 1.67320 1.40521 0.98607 1.20143 0.88441 0.91906 0.92014 0.83349 0.82681 0.76704 0.89486 0.90859 0.95420 0.91881 0.92697 0.94373 0.95012 0.81915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.37 101.05 1.05 1.33 16 2 O -0.30 -3.08 10.46 -18.19 -0.19 -3.28 16 3 C 0.34 3.78 7.49 -16.96 -0.13 3.65 16 4 C -0.20 -1.96 10.02 -39.34 -0.39 -2.35 16 5 C 0.02 0.19 9.70 -38.92 -0.38 -0.19 16 6 C -0.22 -2.74 5.89 -104.83 -0.62 -3.36 16 7 C 0.57 8.44 7.77 -12.43 -0.10 8.34 16 8 O -0.54 -9.59 16.14 5.29 0.09 -9.50 16 9 N -0.71 -10.15 5.06 -53.04 -0.27 -10.42 16 10 C 0.13 2.13 3.24 -66.10 -0.21 1.91 16 11 H 0.10 1.50 7.70 -51.93 -0.40 1.10 16 12 C -0.14 -2.10 6.65 -24.46 -0.16 -2.27 16 13 C 0.10 2.08 4.68 -2.41 -0.01 2.07 16 14 N -0.61 -14.68 3.26 -169.94 -0.55 -15.23 16 15 C -0.33 -9.36 10.44 -15.06 -0.16 -9.52 16 16 H 0.07 2.28 8.06 -52.48 -0.42 1.86 16 17 C -0.02 -0.64 5.42 -17.43 -0.09 -0.74 16 18 N -0.92 -28.89 13.70 55.49 0.76 -28.13 16 19 Si 1.07 26.12 24.69 -169.99 -4.20 21.93 16 20 H -0.29 -6.71 6.63 56.52 0.37 -6.33 16 21 H -0.29 -6.56 6.20 56.52 0.35 -6.21 16 22 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 23 C 0.13 2.62 6.98 -3.07 -0.02 2.60 16 24 C 0.18 2.05 10.71 -17.14 -0.18 1.87 16 25 N -0.54 -6.39 9.18 -12.96 -0.12 -6.51 16 26 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 28 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.15 1.11 8.06 -52.48 -0.42 0.68 16 30 H 0.16 1.55 7.73 -52.48 -0.41 1.15 16 31 H 0.40 4.89 6.67 -40.82 -0.27 4.62 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.56 5.56 -51.93 -0.29 0.27 16 35 H 0.06 1.38 6.25 -51.93 -0.32 1.05 16 36 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.03 0.71 8.04 -51.93 -0.42 0.29 16 39 H 0.16 1.53 6.41 -52.48 -0.34 1.19 16 LS Contribution 323.80 15.07 4.88 4.88 Total: -1.00 -34.60 323.80 -6.07 -40.66 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.05 Total: 2.25 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -1.41 Total: 3.35 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.18 Total: -60.29 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.10 Total: -12.78 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: -4.20 Total: 21.93 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.60 -6.07 -40.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015181644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.358 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds