Wall clock time and date at job start Tue Mar 31 2020 06:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35498 * 116.99598 * 2 1 4 4 C 1.39170 * 119.52618 * 179.97438 * 3 2 1 5 5 C 1.37950 * 119.26642 * 179.97438 * 4 3 2 6 6 C 1.40277 * 118.35746 * 359.97438 * 5 4 3 7 7 C 1.47618 * 120.49936 * 180.02562 * 6 5 4 8 8 O 1.21585 * 119.99991 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00151 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.77975 * 36.78970 * 10 9 7 12 12 C 1.55156 * 110.71794 * 160.02588 * 10 9 7 13 13 C 1.55130 * 101.48324 * 82.69757 * 12 10 9 14 14 N 1.47424 * 104.72156 * 37.29713 * 13 12 10 15 15 C 1.36934 * 125.64535 * 155.82192 * 14 13 12 16 16 H 1.08012 * 119.99766 * 192.91762 * 15 14 13 17 17 C 1.38807 * 120.00605 * 12.90828 * 15 14 13 18 18 N 1.31616 * 120.00452 * 204.24780 * 17 15 14 19 19 Si 1.86800 * 119.99884 * 24.52153 * 17 15 14 20 20 H 1.48498 * 109.47398 * 269.72901 * 19 17 15 21 21 H 1.48504 * 109.46962 * 29.72422 * 19 17 15 22 22 H 1.48500 * 109.47439 * 149.72286 * 19 17 15 23 23 C 1.47017 * 108.70268 * 335.54772 * 14 13 12 24 24 C 1.39520 * 119.00468 * 0.28084 * 6 5 4 25 25 N 1.31666 * 120.62532 * 359.42825 * 24 6 5 26 26 H 1.09002 * 109.46811 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47250 * 300.00423 * 1 2 3 28 28 H 1.09005 * 109.47033 * 60.00130 * 1 2 3 29 29 H 1.08005 * 120.36455 * 359.97438 * 4 3 2 30 30 H 1.08007 * 120.81835 * 179.97438 * 5 4 3 31 31 H 0.97003 * 119.99671 * 0.02562 * 9 7 6 32 32 H 1.08998 * 111.00575 * 200.93697 * 12 10 9 33 33 H 1.08999 * 111.00739 * 324.75094 * 12 10 9 34 34 H 1.08997 * 110.49687 * 278.45236 * 13 12 10 35 35 H 1.09000 * 110.34329 * 156.05842 * 13 12 10 36 36 H 0.96996 * 119.99877 * 354.85650 * 18 17 15 37 37 H 1.09001 * 109.88097 * 120.70582 * 23 14 13 38 38 H 1.09002 * 109.88666 * 241.87183 * 23 14 13 39 39 H 1.08006 * 119.68838 * 179.72317 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4344 1.2688 0.0005 5 6 4.0551 2.5008 0.0000 6 6 3.2523 3.6512 -0.0016 7 6 3.8667 4.9934 -0.0028 8 8 5.0772 5.1080 -0.0029 9 7 3.0859 6.0920 -0.0049 10 6 3.6957 7.4241 -0.0067 11 1 4.5990 7.4351 -0.6166 12 6 2.6842 8.4901 -0.5046 13 6 1.8802 8.7813 0.7897 14 7 2.8796 8.7258 1.8721 15 6 2.7755 9.3486 3.0871 16 1 3.6393 9.4238 3.7312 17 6 1.5601 9.8836 3.4910 18 7 1.5313 10.8599 4.3733 19 14 -0.0354 9.2128 2.7881 20 1 -0.3961 9.9738 1.5651 21 1 0.1392 7.7785 2.4451 22 1 -1.1176 9.3527 3.7954 23 6 4.0035 7.8856 1.4333 24 6 1.8645 3.5077 0.0033 25 7 1.3138 2.3118 -0.0018 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.0210 0.3619 0.0014 30 1 5.1324 2.5777 0.0008 31 1 2.1202 6.0007 -0.0053 32 1 3.1999 9.3832 -0.8574 33 1 2.0375 8.0824 -1.2815 34 1 1.1136 8.0215 0.9419 35 1 1.4289 9.7722 0.7407 36 1 2.3525 11.1551 4.7969 37 1 4.9268 8.4647 1.4476 38 1 4.0966 7.0193 2.0883 39 1 1.2360 4.3861 0.0067 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015181644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:35 Heat of formation + Delta-G solvation = -30.069879 kcal Electronic energy + Delta-G solvation = -22897.169856 eV Core-core repulsion = 19419.169624 eV Total energy + Delta-G solvation = -3478.000232 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97415 -40.86517 -39.28573 -38.54406 -35.66510 -34.12135 -33.66135 -32.23655 -30.95056 -29.57430 -28.27725 -26.02568 -25.24723 -24.31822 -22.63288 -22.25665 -21.33218 -19.68997 -19.52055 -18.84875 -18.27838 -17.21219 -17.12018 -16.97834 -16.10495 -16.06055 -15.79222 -15.45712 -15.35722 -15.14156 -14.87975 -14.40411 -14.24918 -13.92981 -13.75276 -13.62051 -13.04702 -12.85513 -12.78608 -12.60352 -12.35707 -12.21929 -11.76683 -11.56048 -11.31750 -11.21773 -11.10845 -10.72666 -10.66013 -10.25449 -9.66627 -9.14649 -8.63932 -5.45355 -0.41011 0.08782 1.40908 1.56316 1.72193 1.73906 1.97148 2.07099 2.54960 2.71712 3.07083 3.09148 3.36277 3.57596 3.65673 3.74888 3.87026 3.94063 4.02789 4.19917 4.43006 4.43347 4.43619 4.51805 4.56916 4.66614 4.77948 4.79706 4.88514 4.91186 4.98641 5.02791 5.19802 5.22074 5.49211 5.56850 6.05528 6.10425 6.44459 6.58841 6.83847 7.11479 7.46777 8.12521 8.84111 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018772 B = 0.004088 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.222646 B = 6847.329948 C = 7734.309506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.331 3.669 4 C -0.192 4.192 5 C 0.015 3.985 6 C -0.236 4.236 7 C 0.570 3.430 8 O -0.574 6.574 9 N -0.702 5.702 10 C 0.147 3.853 11 H 0.108 0.892 12 C -0.118 4.118 13 C 0.090 3.910 14 N -0.626 5.626 15 C -0.322 4.322 16 H 0.032 0.968 17 C -0.079 4.079 18 N -0.957 5.957 19 Si 1.110 2.890 20 H -0.262 1.262 21 H -0.259 1.259 22 H -0.310 1.310 23 C 0.124 3.876 24 C 0.183 3.817 25 N -0.553 5.553 26 H 0.125 0.875 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.173 0.827 30 H 0.160 0.840 31 H 0.410 0.590 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.246 0.754 37 H 0.025 0.975 38 H 0.011 0.989 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.464 -21.635 -16.041 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.216 6.216 3 C 0.152 3.848 4 C -0.212 4.212 5 C -0.011 4.011 6 C -0.242 4.242 7 C 0.359 3.641 8 O -0.455 6.455 9 N -0.354 5.354 10 C 0.041 3.959 11 H 0.125 0.875 12 C -0.156 4.156 13 C -0.034 4.034 14 N -0.354 5.354 15 C -0.451 4.451 16 H 0.050 0.950 17 C -0.272 4.272 18 N -0.601 5.601 19 Si 0.934 3.066 20 H -0.188 1.188 21 H -0.184 1.184 22 H -0.239 1.239 23 C -0.003 4.003 24 C 0.025 3.975 25 N -0.277 5.277 26 H 0.143 0.857 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.190 0.810 30 H 0.178 0.822 31 H 0.248 0.752 32 H 0.114 0.886 33 H 0.138 0.862 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.043 0.957 38 H 0.029 0.971 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.023 -21.679 -15.983 27.233 hybrid contribution 2.333 0.480 1.112 2.628 sum -1.690 -21.199 -14.871 25.950 Atomic orbital electron populations 1.23153 0.75384 1.05006 1.02614 1.86217 1.24745 1.23957 1.86701 1.20406 0.90150 0.85012 0.89202 1.21275 0.91641 1.00124 1.08208 1.21677 1.01700 0.89722 0.87992 1.20732 0.95647 0.93970 1.13826 1.18152 0.86228 0.84474 0.75280 1.90759 1.15243 1.87518 1.51949 1.45801 1.10630 1.04926 1.74038 1.21787 0.97930 0.81549 0.94617 0.87461 1.23073 0.97560 0.98511 0.96498 1.22344 0.93000 0.99778 0.88304 1.44862 1.20516 1.57084 1.12936 1.19904 0.95971 1.33364 0.95849 0.95007 1.27330 1.04158 0.96024 0.99662 1.71029 1.30346 1.25180 1.33543 0.83322 0.71310 0.76857 0.75083 1.18787 1.18397 1.23868 1.21817 0.90977 0.92531 0.94961 1.22909 0.91409 0.94552 0.88630 1.67365 1.40802 0.98852 1.20701 0.85671 0.92443 0.91951 0.80952 0.82200 0.75222 0.88601 0.86166 0.93836 0.93234 0.94525 0.95687 0.97106 0.80043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.37 113.37 1.18 1.59 16 2 O -0.31 -5.54 10.46 -87.99 -0.92 -6.46 16 3 C 0.33 6.64 7.49 84.83 0.64 7.27 16 4 C -0.19 -3.37 10.02 22.43 0.22 -3.15 16 5 C 0.01 0.29 9.70 22.70 0.22 0.51 16 6 C -0.24 -5.38 5.89 -20.00 -0.12 -5.50 16 7 C 0.57 15.92 7.77 86.72 0.67 16.59 16 8 O -0.57 -19.92 16.14 -3.98 -0.06 -19.98 16 9 N -0.70 -18.10 5.06 -439.99 -2.23 -20.33 16 10 C 0.15 4.36 3.24 46.18 0.15 4.51 16 11 H 0.11 3.06 7.70 -2.39 -0.02 3.04 16 12 C -0.12 -3.10 6.65 32.06 0.21 -2.89 16 13 C 0.09 3.38 4.68 86.93 0.41 3.78 16 14 N -0.63 -30.04 3.26 -691.57 -2.26 -32.30 16 15 C -0.32 -19.06 10.44 84.03 0.88 -18.19 16 16 H 0.03 2.09 8.06 -2.90 -0.02 2.07 16 17 C -0.08 -4.68 5.42 84.86 0.46 -4.22 16 18 N -0.96 -62.02 13.70 21.65 0.30 -61.73 16 19 Si 1.11 51.51 24.69 68.60 1.69 53.21 16 20 H -0.26 -10.83 6.63 99.48 0.66 -10.17 16 21 H -0.26 -10.63 6.20 99.48 0.62 -10.01 16 22 H -0.31 -14.89 7.11 99.48 0.71 -14.18 16 23 C 0.12 5.11 6.98 86.73 0.61 5.72 16 24 C 0.18 3.69 10.71 85.03 0.91 4.60 16 25 N -0.55 -11.71 9.18 -307.81 -2.82 -14.53 16 26 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 28 H 0.06 0.78 8.10 -2.38 -0.02 0.76 16 29 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.16 3.00 7.73 -2.91 -0.02 2.98 16 31 H 0.41 8.45 6.67 -92.71 -0.62 7.84 16 32 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.04 1.54 5.56 -2.39 -0.01 1.52 16 35 H 0.05 2.02 6.25 -2.39 -0.01 2.00 16 36 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.01 0.49 8.04 -2.39 -0.02 0.47 16 39 H 0.18 2.78 6.41 -2.91 -0.02 2.76 16 Total: -1.00 -78.27 323.80 0.42 -77.86 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.28 Total: 13.64 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 6.44 Total: 10.62 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -7.01 Total: -128.88 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.99 Total: -26.44 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 1.69 Total: 53.21 kcal Total: -78.27 0.42 -77.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015181644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.790 kcal (2) G-P(sol) polarization free energy of solvation -78.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds