Wall clock time and date at job start Tue Mar 31 2020 06:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35743 * 117.00085 * 2 1 4 4 C 1.39213 * 120.81310 * 0.02562 * 3 2 1 5 5 C 1.38318 * 119.28581 * 179.97438 * 4 3 2 6 6 N 1.31614 * 120.96977 * 0.28180 * 5 4 3 7 7 C 1.32794 * 121.78369 * 359.42551 * 6 5 4 8 8 C 1.48184 * 119.70028 * 180.29359 * 7 6 5 9 9 O 1.21509 * 120.00011 * 180.27298 * 8 7 6 10 10 N 1.34774 * 119.99870 * 0.27555 * 8 7 6 11 11 C 1.46503 * 120.00119 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.88369 * 31.11728 * 11 10 8 13 13 C 1.55158 * 111.00328 * 154.99907 * 11 10 8 14 14 C 1.54322 * 102.93969 * 153.57911 * 13 11 10 15 15 N 1.47030 * 107.26947 * 337.80145 * 14 13 11 16 16 C 1.36939 * 125.64372 * 178.89595 * 15 14 13 17 17 H 1.08001 * 119.99638 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00359 * 0.03187 * 16 15 14 19 19 N 1.31622 * 119.99578 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99988 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47341 * 89.99640 * 20 18 16 22 22 H 1.48501 * 109.47125 * 209.99637 * 20 18 16 23 23 H 1.48502 * 109.47170 * 329.99453 * 20 18 16 24 24 C 1.47422 * 108.70463 * 358.94659 * 15 14 13 25 25 C 1.39101 * 120.60240 * 0.56943 * 7 6 5 26 26 H 1.09001 * 109.47214 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47346 * 299.99911 * 1 2 3 28 28 H 1.08998 * 109.47429 * 60.00007 * 1 2 3 29 29 H 1.07997 * 120.35516 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.51019 * 179.97438 * 5 4 3 31 31 H 0.97007 * 120.00134 * 359.97438 * 10 8 7 32 32 H 1.09005 * 110.71861 * 271.93693 * 13 11 10 33 33 H 1.08996 * 110.71976 * 35.21046 * 13 11 10 34 34 H 1.08994 * 109.88532 * 97.22325 * 14 13 11 35 35 H 1.09001 * 109.88347 * 218.23622 * 14 13 11 36 36 H 0.97002 * 119.99160 * 180.02562 * 19 18 16 37 37 H 1.09003 * 110.36379 * 265.29022 * 24 15 14 38 38 H 1.08988 * 110.36849 * 142.96315 * 24 15 14 39 39 H 1.08004 * 120.51159 * 179.70212 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3037 2.3877 0.0005 5 6 1.9643 3.6029 0.0011 6 7 3.2793 3.6590 -0.0045 7 6 4.0262 2.5610 0.0005 8 6 5.5034 2.6780 0.0005 9 8 6.1921 1.6769 0.0000 10 7 6.0830 3.8947 0.0010 11 6 7.5435 4.0104 0.0004 12 1 7.9994 3.1723 -0.5266 13 6 7.9939 5.3634 -0.6111 14 6 9.3603 5.6093 0.0626 15 7 9.3827 4.8223 1.3044 16 6 10.4295 4.7493 2.1842 17 1 10.3471 4.1398 3.0720 18 6 11.5963 5.4587 1.9351 19 7 11.6967 6.2011 0.8528 20 14 13.0239 5.3596 3.1356 21 1 13.9179 4.2381 2.7503 22 1 13.7864 6.6336 3.1043 23 1 12.5025 5.1285 4.5067 24 6 8.0920 4.1238 1.4447 25 6 3.4346 1.3021 0.0000 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 0.2243 2.3532 0.0005 30 1 1.3926 4.5192 0.0011 31 1 5.5332 4.6939 0.0010 32 1 8.1065 5.2796 -1.6921 33 1 7.2899 6.1554 -0.3559 34 1 10.1635 5.2826 -0.5978 35 1 9.4759 6.6689 0.2906 36 1 12.5123 6.6965 0.6786 37 1 7.4107 4.7068 2.0645 38 1 8.2416 3.1327 1.8725 39 1 4.0435 0.4101 -0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015484934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:38 Heat of formation + Delta-G solvation = -3.104305 kcal Electronic energy + Delta-G solvation = -22394.777553 eV Core-core repulsion = 18917.946636 eV Total energy + Delta-G solvation = -3476.830917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.08565 -39.56635 -38.34036 -37.11680 -34.03924 -32.15576 -31.90432 -31.36026 -29.11059 -28.11616 -27.14589 -24.86774 -23.82863 -23.67757 -21.01047 -20.29093 -19.92666 -18.82480 -17.61879 -16.98467 -16.35430 -16.33377 -15.96480 -15.82745 -15.05954 -14.88995 -14.57081 -14.19231 -14.11754 -13.90839 -13.53052 -12.97425 -12.69519 -12.36631 -12.18222 -12.03722 -11.77580 -11.74609 -10.98265 -10.86805 -10.72285 -10.42041 -10.17956 -10.05933 -9.84963 -9.72627 -9.63155 -9.57196 -9.27908 -8.69448 -8.54939 -6.79446 -5.67164 -3.00497 0.39441 0.96384 2.56988 2.72826 3.30130 3.44809 3.49548 3.51510 3.70921 4.01298 4.22208 4.45071 4.55580 4.61741 4.63378 4.78165 4.96726 4.99328 5.28560 5.34959 5.45245 5.49071 5.65001 5.66348 5.80531 5.84430 6.06148 6.24187 6.38739 6.48269 6.62613 6.73319 6.74568 7.00699 7.45383 7.58921 7.62707 7.79320 7.87124 8.28426 8.36301 9.26197 9.86005 10.51216 11.44814 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.039367 B = 0.002822 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.082155 B = 9917.905066 C =10241.583842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.162 3.838 4 C -0.248 4.248 5 C 0.137 3.863 6 N -0.481 5.481 7 C 0.122 3.878 8 C 0.567 3.433 9 O -0.529 6.529 10 N -0.692 5.692 11 C 0.124 3.876 12 H 0.099 0.901 13 C -0.149 4.149 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.225 4.225 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.924 5.924 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.129 3.871 25 C -0.145 4.145 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.143 0.857 30 H 0.166 0.834 31 H 0.409 0.591 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.252 0.748 37 H 0.021 0.979 38 H 0.044 0.956 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.555 -6.755 -4.299 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.108 3.892 4 C -0.269 4.269 5 C -0.023 4.023 6 N -0.196 5.196 7 C -0.015 4.015 8 C 0.350 3.650 9 O -0.405 6.405 10 N -0.341 5.341 11 C 0.019 3.981 12 H 0.117 0.883 13 C -0.188 4.188 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.354 4.354 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.572 5.572 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.002 3.998 25 C -0.167 4.167 26 H 0.123 0.877 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.161 0.839 30 H 0.183 0.817 31 H 0.245 0.755 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -24.292 -6.800 -4.282 25.587 hybrid contribution -0.360 -0.290 0.611 0.766 sum -24.651 -7.090 -3.671 25.912 Atomic orbital electron populations 1.23173 0.77563 1.04595 1.01710 1.86106 1.22013 1.25993 1.87757 1.19210 0.92127 0.84838 0.92982 1.22398 1.01756 0.93228 1.09478 1.22592 0.89680 0.97191 0.92797 1.67633 1.07313 1.31283 1.13418 1.21096 0.94619 0.88546 0.97219 1.17766 0.85446 0.84285 0.77492 1.90811 1.63190 1.36541 1.49991 1.45854 1.08196 1.07848 1.72242 1.22419 0.77412 0.99377 0.98890 0.88312 1.23190 1.00588 0.95054 0.99956 1.21149 0.90193 0.96251 0.86992 1.44393 1.11487 1.53195 1.23991 1.19078 0.91401 1.23884 1.00990 0.90373 1.24805 0.98101 0.99601 0.98052 1.69954 1.27046 1.33756 1.26403 0.86089 0.82354 0.76945 0.80204 1.21581 1.21705 1.20710 1.21825 0.88637 0.96157 0.93200 1.21432 0.91958 0.99932 1.03346 0.87681 0.92192 0.92226 0.83942 0.81714 0.75530 0.91514 0.91852 0.93216 0.93526 0.93762 0.96106 0.93812 0.82583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.10 16 2 O -0.31 -2.80 10.51 -18.94 -0.20 -3.00 16 3 C 0.16 1.64 6.73 -38.85 -0.26 1.38 16 4 C -0.25 -1.93 9.12 -39.19 -0.36 -2.29 16 5 C 0.14 1.19 11.17 -17.62 -0.20 0.99 16 6 N -0.48 -5.75 9.54 -9.87 -0.09 -5.85 16 7 C 0.12 1.68 6.75 -83.05 -0.56 1.12 16 8 C 0.57 9.38 7.81 -12.18 -0.10 9.29 16 9 O -0.53 -10.40 15.96 5.36 0.09 -10.31 16 10 N -0.69 -11.08 5.19 -52.56 -0.27 -11.35 16 11 C 0.12 2.35 3.42 -65.78 -0.23 2.13 16 12 H 0.10 2.03 7.54 -51.93 -0.39 1.64 16 13 C -0.15 -2.78 6.60 -24.90 -0.16 -2.94 16 14 C 0.18 4.39 5.37 -3.06 -0.02 4.37 16 15 N -0.60 -15.96 3.39 -170.07 -0.58 -16.54 16 16 C -0.23 -6.48 10.28 -15.06 -0.15 -6.63 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -27.49 10.31 55.49 0.57 -26.91 16 20 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.13 2.88 6.93 -2.53 -0.02 2.86 16 25 C -0.14 -1.82 9.60 -38.89 -0.37 -2.19 16 26 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.20 7.71 -51.93 -0.40 -0.20 16 28 H 0.06 0.19 7.71 -51.93 -0.40 -0.21 16 29 H 0.14 0.64 6.45 -52.49 -0.34 0.30 16 30 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 31 H 0.41 5.74 7.89 -40.82 -0.32 5.42 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.06 8.00 -51.93 -0.42 0.65 16 34 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 35 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.04 1.01 8.14 -51.94 -0.42 0.59 16 39 H 0.16 2.01 7.64 -52.48 -0.40 1.61 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -34.00 329.46 -7.17 -41.17 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.10 Total: 1.44 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -1.52 Total: 8.82 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.37 Total: -60.65 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.11 Total: -13.31 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.00 -7.17 -41.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015484934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.064 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds