Wall clock time and date at job start Tue Mar 31 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35743 * 117.00085 * 2 1 4 4 C 1.39213 * 120.81310 * 0.02562 * 3 2 1 5 5 C 1.38318 * 119.28581 * 179.97438 * 4 3 2 6 6 N 1.31614 * 120.96977 * 0.28180 * 5 4 3 7 7 C 1.32794 * 121.78369 * 359.42551 * 6 5 4 8 8 C 1.48184 * 119.70028 * 180.29359 * 7 6 5 9 9 O 1.21509 * 120.00011 * 180.27298 * 8 7 6 10 10 N 1.34774 * 119.99870 * 0.27555 * 8 7 6 11 11 C 1.46503 * 120.00119 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.88369 * 31.11728 * 11 10 8 13 13 C 1.55158 * 111.00328 * 154.99907 * 11 10 8 14 14 C 1.54322 * 102.93969 * 153.57911 * 13 11 10 15 15 N 1.47030 * 107.26947 * 337.80145 * 14 13 11 16 16 C 1.36939 * 125.64372 * 178.89595 * 15 14 13 17 17 H 1.08001 * 119.99638 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00359 * 0.03187 * 16 15 14 19 19 N 1.31622 * 119.99578 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99988 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47341 * 89.99640 * 20 18 16 22 22 H 1.48501 * 109.47125 * 209.99637 * 20 18 16 23 23 H 1.48502 * 109.47170 * 329.99453 * 20 18 16 24 24 C 1.47422 * 108.70463 * 358.94659 * 15 14 13 25 25 C 1.39101 * 120.60240 * 0.56943 * 7 6 5 26 26 H 1.09001 * 109.47214 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47346 * 299.99911 * 1 2 3 28 28 H 1.08998 * 109.47429 * 60.00007 * 1 2 3 29 29 H 1.07997 * 120.35516 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.51019 * 179.97438 * 5 4 3 31 31 H 0.97007 * 120.00134 * 359.97438 * 10 8 7 32 32 H 1.09005 * 110.71861 * 271.93693 * 13 11 10 33 33 H 1.08996 * 110.71976 * 35.21046 * 13 11 10 34 34 H 1.08994 * 109.88532 * 97.22325 * 14 13 11 35 35 H 1.09001 * 109.88347 * 218.23622 * 14 13 11 36 36 H 0.97002 * 119.99160 * 180.02562 * 19 18 16 37 37 H 1.09003 * 110.36379 * 265.29022 * 24 15 14 38 38 H 1.08988 * 110.36849 * 142.96315 * 24 15 14 39 39 H 1.08004 * 120.51159 * 179.70212 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3037 2.3877 0.0005 5 6 1.9643 3.6029 0.0011 6 7 3.2793 3.6590 -0.0045 7 6 4.0262 2.5610 0.0005 8 6 5.5034 2.6780 0.0005 9 8 6.1921 1.6769 0.0000 10 7 6.0830 3.8947 0.0010 11 6 7.5435 4.0104 0.0004 12 1 7.9994 3.1723 -0.5266 13 6 7.9939 5.3634 -0.6111 14 6 9.3603 5.6093 0.0626 15 7 9.3827 4.8223 1.3044 16 6 10.4295 4.7493 2.1842 17 1 10.3471 4.1398 3.0720 18 6 11.5963 5.4587 1.9351 19 7 11.6967 6.2011 0.8528 20 14 13.0239 5.3596 3.1356 21 1 13.9179 4.2381 2.7503 22 1 13.7864 6.6336 3.1043 23 1 12.5025 5.1285 4.5067 24 6 8.0920 4.1238 1.4447 25 6 3.4346 1.3021 0.0000 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 0.2243 2.3532 0.0005 30 1 1.3926 4.5192 0.0011 31 1 5.5332 4.6939 0.0010 32 1 8.1065 5.2796 -1.6921 33 1 7.2899 6.1554 -0.3559 34 1 10.1635 5.2826 -0.5978 35 1 9.4759 6.6689 0.2906 36 1 12.5123 6.6965 0.6786 37 1 7.4107 4.7068 2.0645 38 1 8.2416 3.1327 1.8725 39 1 4.0435 0.4101 -0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015484934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:37 Heat of formation + Delta-G solvation = -28.244355 kcal Electronic energy + Delta-G solvation = -22395.867707 eV Core-core repulsion = 18917.946636 eV Total energy + Delta-G solvation = -3477.921071 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.93293 -40.73581 -39.28997 -38.70800 -35.70216 -33.86205 -32.70603 -32.43654 -30.97618 -29.00874 -28.45380 -26.63858 -25.09642 -24.42349 -22.34602 -21.98101 -21.55047 -19.82297 -18.92046 -18.45739 -17.39303 -17.25608 -16.90964 -16.72326 -16.67809 -16.21903 -15.88788 -15.73360 -15.29640 -14.80146 -14.65618 -14.40622 -14.17025 -13.94897 -13.70366 -13.39340 -12.96394 -12.77069 -12.53321 -12.44588 -12.31905 -12.15191 -12.03412 -11.82505 -11.60541 -11.39670 -10.72393 -10.71654 -10.42527 -10.11727 -9.98780 -8.92928 -7.86543 -5.23003 -0.48056 0.20944 1.45661 1.48415 1.56836 1.63043 1.77366 2.26755 2.50247 2.78491 3.06621 3.31987 3.58863 3.66161 3.75221 3.84971 3.96597 4.03224 4.15635 4.19823 4.34616 4.39807 4.49000 4.57983 4.70357 4.71096 4.76853 4.85234 4.93092 4.96388 5.04039 5.35318 5.41787 5.47042 5.63514 5.73311 6.14959 6.17801 6.37912 6.78862 7.07869 7.10217 7.73502 8.37427 9.23723 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.039367 B = 0.002822 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.082155 B = 9917.905066 C =10241.583842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.328 6.328 3 C 0.159 3.841 4 C -0.224 4.224 5 C 0.137 3.863 6 N -0.495 5.495 7 C 0.103 3.897 8 C 0.566 3.434 9 O -0.570 6.570 10 N -0.680 5.680 11 C 0.142 3.858 12 H 0.081 0.919 13 C -0.128 4.128 14 C 0.185 3.815 15 N -0.625 5.625 16 C -0.247 4.247 17 H 0.078 0.922 18 C -0.064 4.064 19 N -0.949 5.949 20 Si 0.982 3.018 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.270 1.270 24 C 0.129 3.871 25 C -0.163 4.163 26 H 0.120 0.880 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.185 0.815 30 H 0.206 0.794 31 H 0.421 0.579 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.016 0.984 35 H 0.019 0.981 36 H 0.249 0.751 37 H 0.031 0.969 38 H 0.028 0.972 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.914 -6.312 -4.223 29.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.105 3.895 4 C -0.245 4.245 5 C -0.022 4.022 6 N -0.211 5.211 7 C -0.033 4.033 8 C 0.351 3.649 9 O -0.449 6.449 10 N -0.331 5.331 11 C 0.036 3.964 12 H 0.099 0.901 13 C -0.166 4.166 14 C 0.060 3.940 15 N -0.352 5.352 16 C -0.376 4.376 17 H 0.096 0.904 18 C -0.257 4.257 19 N -0.597 5.597 20 Si 0.809 3.191 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.195 1.195 24 C 0.002 3.998 25 C -0.185 4.185 26 H 0.138 0.862 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.202 0.798 30 H 0.223 0.777 31 H 0.260 0.740 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.034 0.966 35 H 0.037 0.963 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -27.712 -6.359 -4.206 28.741 hybrid contribution 0.493 -0.498 0.600 0.922 sum -27.219 -6.856 -3.605 28.300 Atomic orbital electron populations 1.23550 0.74999 1.06320 1.03276 1.86095 1.24651 1.25714 1.87486 1.19247 0.91350 0.86230 0.92692 1.22824 1.03654 0.91704 1.06298 1.23323 0.88599 0.99185 0.91102 1.67593 1.08982 1.30395 1.14096 1.20530 0.92834 0.89656 1.00284 1.18260 0.86963 0.83528 0.76108 1.90781 1.64616 1.37768 1.51705 1.45611 1.06725 1.08535 1.72223 1.21945 0.79204 0.98984 0.96295 0.90092 1.23010 0.97506 0.95385 1.00723 1.20945 0.92656 0.94223 0.86206 1.44677 1.12356 1.53940 1.24250 1.19430 0.92582 1.23973 1.01631 0.90429 1.25670 1.00616 0.99452 0.99933 1.70164 1.27402 1.34302 1.27879 0.85037 0.78846 0.76709 0.78461 1.21299 1.21565 1.19513 1.21913 0.87457 0.94925 0.95505 1.21368 0.93548 0.98963 1.04642 0.86180 0.90592 0.90488 0.79788 0.77694 0.74012 0.89083 0.89112 0.96603 0.96264 0.94158 0.95126 0.95390 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.84 113.37 1.12 1.18 16 2 O -0.33 -5.34 10.51 -90.67 -0.95 -6.29 16 3 C 0.16 2.91 6.73 22.75 0.15 3.06 16 4 C -0.22 -2.58 9.12 22.52 0.21 -2.37 16 5 C 0.14 1.83 11.17 84.74 0.95 2.78 16 6 N -0.49 -10.77 9.54 -185.14 -1.77 -12.53 16 7 C 0.10 2.79 6.75 41.85 0.28 3.08 16 8 C 0.57 19.06 7.81 86.89 0.68 19.73 16 9 O -0.57 -23.43 15.96 -3.74 -0.06 -23.49 16 10 N -0.68 -21.48 5.19 -438.50 -2.27 -23.75 16 11 C 0.14 5.42 3.42 46.38 0.16 5.58 16 12 H 0.08 3.43 7.54 -2.39 -0.02 3.41 16 13 C -0.13 -4.66 6.60 31.78 0.21 -4.45 16 14 C 0.18 9.31 5.37 86.73 0.47 9.77 16 15 N -0.63 -34.02 3.39 -691.99 -2.35 -36.36 16 16 C -0.25 -14.60 10.28 84.03 0.86 -13.73 16 17 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.06 -3.73 5.49 84.86 0.47 -3.27 16 19 N -0.95 -58.05 10.31 21.65 0.22 -57.82 16 20 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 24 C 0.13 5.85 6.93 86.86 0.60 6.45 16 25 C -0.16 -4.10 9.60 22.72 0.22 -3.88 16 26 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.08 0.19 7.71 -2.39 -0.02 0.17 16 28 H 0.08 0.17 7.71 -2.39 -0.02 0.15 16 29 H 0.18 0.53 6.45 -2.91 -0.02 0.52 16 30 H 0.21 1.01 8.06 -2.91 -0.02 0.99 16 31 H 0.42 11.17 7.89 -92.70 -0.73 10.43 16 32 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 33 H 0.09 2.85 8.00 -2.39 -0.02 2.83 16 34 H 0.02 0.89 7.38 -2.39 -0.02 0.87 16 35 H 0.02 1.06 7.51 -2.39 -0.02 1.04 16 36 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.14 3.83 7.64 -2.91 -0.02 3.81 16 Total: -1.00 -77.84 329.46 1.56 -76.28 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.34 Total: 10.84 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 6.36 Total: 23.93 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -6.17 Total: -130.47 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -1.01 Total: -29.78 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -77.84 1.56 -76.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015484934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.038 kcal (2) G-P(sol) polarization free energy of solvation -77.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds