Wall clock time and date at job start Tue Mar 31 2020 06:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35662 * 117.00261 * 2 1 4 4 C 1.39282 * 119.62237 * 179.97438 * 3 2 1 5 5 C 1.38332 * 119.31079 * 180.02562 * 4 3 2 6 6 C 1.38783 * 118.55484 * 0.02562 * 5 4 3 7 7 C 1.39120 * 119.19015 * 359.97438 * 6 5 4 8 8 C 1.48157 * 119.69325 * 179.97438 * 7 6 5 9 9 O 1.21521 * 119.99623 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00645 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00637 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.88119 * 328.88242 * 11 10 8 13 13 C 1.55157 * 111.00779 * 205.00634 * 11 10 8 14 14 C 1.54321 * 102.93981 * 206.42160 * 13 11 10 15 15 N 1.47020 * 107.27348 * 22.19198 * 14 13 11 16 16 C 1.36929 * 125.64817 * 181.02587 * 15 14 13 17 17 H 1.08001 * 120.00390 * 185.86016 * 16 15 14 18 18 C 1.38815 * 120.00214 * 5.85300 * 16 15 14 19 19 N 1.31620 * 119.99646 * 7.32913 * 18 16 15 20 20 Si 1.86797 * 120.00191 * 187.32803 * 18 16 15 21 21 H 1.48501 * 109.47357 * 265.01605 * 20 18 16 22 22 H 1.48499 * 109.47206 * 25.01555 * 20 18 16 23 23 H 1.48494 * 109.47172 * 145.01502 * 20 18 16 24 24 C 1.47423 * 108.70333 * 1.28517 * 15 14 13 25 25 N 1.31906 * 119.61559 * 0.25654 * 3 2 1 26 26 H 1.09002 * 109.47606 * 59.99403 * 1 2 3 27 27 H 1.09004 * 109.47550 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47149 * 299.99674 * 1 2 3 29 29 H 1.08000 * 120.34832 * 0.02998 * 4 3 2 30 30 H 1.07994 * 120.72381 * 180.02562 * 5 4 3 31 31 H 1.08004 * 120.40382 * 179.97438 * 6 5 4 32 32 H 0.97010 * 119.99831 * 0.02562 * 10 8 7 33 33 H 1.08998 * 110.72558 * 88.05281 * 13 11 10 34 34 H 1.09005 * 110.87051 * 324.85510 * 13 11 10 35 35 H 1.08997 * 109.88191 * 262.76841 * 14 13 11 36 36 H 1.09009 * 110.00926 * 141.67978 * 14 13 11 37 37 H 0.97003 * 119.99469 * 179.97438 * 19 18 16 38 38 H 1.08998 * 110.36579 * 94.48111 * 24 15 14 39 39 H 1.09002 * 110.36870 * 216.80998 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4362 1.2724 0.0005 5 6 4.0576 2.5083 0.0011 6 6 3.2664 3.6486 0.0016 7 6 1.8818 3.5137 0.0010 8 6 1.0266 4.7235 0.0022 9 8 1.5353 5.8271 0.0031 10 7 -0.3155 4.6001 0.0011 11 6 -1.1611 5.7964 0.0016 12 1 -0.6738 6.6165 0.5291 13 6 -2.5545 5.4923 0.6126 14 6 -3.4638 6.5414 -0.0613 15 7 -2.7983 6.9630 -1.3026 16 6 -3.2707 7.8992 -2.1831 17 1 -2.7547 8.0721 -3.1160 18 6 -4.4131 8.6259 -1.8768 19 7 -4.9595 8.5213 -0.6840 20 14 -5.1748 9.7524 -3.1576 21 1 -4.6712 11.1357 -2.9624 22 1 -4.8061 9.2784 -4.5157 23 1 -6.6526 9.7386 -3.0128 24 6 -1.5411 6.2064 -1.4454 25 7 1.3191 2.3102 0.0051 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 4.0239 0.3663 0.0005 30 1 5.1348 2.5843 0.0011 31 1 3.7202 4.6287 0.0024 32 1 -0.7216 3.7191 0.0000 33 1 -2.5404 5.6315 1.6936 34 1 -2.8775 4.4824 0.3595 35 1 -3.5936 7.3985 0.5994 36 1 -4.4340 6.1010 -0.2919 37 1 -5.7575 9.0295 -0.4699 38 1 -1.6984 5.3226 -2.0636 39 1 -0.7647 6.8386 -1.8764 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015928742.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:48 Heat of formation + Delta-G solvation = -3.050541 kcal Electronic energy + Delta-G solvation = -22725.397642 eV Core-core repulsion = 19248.569057 eV Total energy + Delta-G solvation = -3476.828585 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.05324 -39.48765 -38.00362 -37.09167 -34.14023 -32.92811 -31.76809 -31.04214 -29.16080 -27.72365 -27.13267 -25.02208 -24.04976 -23.14634 -21.14884 -20.34698 -19.96416 -18.66028 -17.89794 -16.92125 -16.33356 -16.29332 -15.99516 -15.85140 -14.89535 -14.63711 -14.48000 -14.24236 -14.03927 -13.61213 -13.39612 -12.86562 -12.50693 -12.43688 -12.21635 -12.03190 -11.82800 -11.44495 -11.04319 -10.84631 -10.76198 -10.57602 -10.28561 -10.27823 -10.09639 -9.90783 -9.74805 -9.63459 -8.89494 -8.69547 -8.60174 -6.81936 -5.68940 -3.05225 0.43185 0.96951 2.72293 2.75835 3.16482 3.42100 3.47390 3.49648 3.68510 3.87220 4.51499 4.60024 4.71113 4.73174 4.98085 5.04429 5.09479 5.18469 5.29472 5.41133 5.44395 5.59189 5.66475 5.75586 5.79112 5.84151 6.02198 6.18661 6.33790 6.43193 6.57368 6.69477 6.85544 6.97133 7.33498 7.44643 7.65010 7.73062 7.82735 8.25958 8.31791 9.21862 9.82595 10.47706 11.40622 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027566 B = 0.003265 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.488641 B = 8574.694511 C = 9042.868690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.308 6.308 3 C 0.319 3.681 4 C -0.171 4.171 5 C -0.048 4.048 6 C -0.149 4.149 7 C 0.126 3.874 8 C 0.566 3.434 9 O -0.528 6.528 10 N -0.694 5.694 11 C 0.124 3.876 12 H 0.100 0.900 13 C -0.147 4.147 14 C 0.173 3.827 15 N -0.602 5.602 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.129 3.871 25 N -0.517 5.517 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.406 0.594 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.032 0.968 37 H 0.252 0.748 38 H 0.021 0.979 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.834 -17.648 3.970 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.215 6.215 3 C 0.138 3.862 4 C -0.192 4.192 5 C -0.073 4.073 6 C -0.170 4.170 7 C -0.011 4.011 8 C 0.349 3.651 9 O -0.404 6.404 10 N -0.343 5.343 11 C 0.019 3.981 12 H 0.118 0.882 13 C -0.186 4.186 14 C 0.048 3.952 15 N -0.329 5.329 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.206 1.206 23 H -0.217 1.217 24 C 0.002 3.998 25 N -0.244 5.244 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.163 0.837 30 H 0.167 0.833 31 H 0.170 0.830 32 H 0.242 0.758 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.038 0.962 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.153 -16.995 3.964 22.469 hybrid contribution -0.076 0.193 -0.651 0.683 sum 14.077 -16.802 3.313 22.168 Atomic orbital electron populations 1.22930 0.76779 1.03244 1.02882 1.86237 1.23263 1.24105 1.87855 1.19768 0.89413 0.84450 0.92583 1.21278 0.91973 0.99883 1.06031 1.21456 1.00925 0.90799 0.94108 1.22031 0.93081 1.00969 1.00962 1.20934 0.92335 0.90210 0.97604 1.17851 0.82612 0.87210 0.77413 1.90814 1.73883 1.25713 1.50019 1.45882 1.05290 1.10770 1.72383 1.22478 0.90048 0.86647 0.98900 0.88203 1.23148 0.94759 1.00713 1.00009 1.21233 0.92298 0.93985 0.87726 1.44391 1.19339 1.44840 1.24314 1.19070 1.07398 1.11758 0.97359 0.90403 1.24815 0.98895 0.99772 0.96981 1.69943 1.23073 1.44843 1.18947 0.86087 0.78472 0.80526 0.80615 1.21590 1.20644 1.21652 1.21880 0.89740 0.95054 0.93145 1.67165 1.41059 0.98253 1.17949 0.91929 0.88451 0.92002 0.83663 0.83300 0.83003 0.75849 0.91495 0.92092 0.91526 0.94953 0.93760 0.96166 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.34 16 2 O -0.31 -3.11 10.47 -18.69 -0.20 -3.31 16 3 C 0.32 3.48 7.49 -17.13 -0.13 3.35 16 4 C -0.17 -1.46 10.05 -39.16 -0.39 -1.86 16 5 C -0.05 -0.38 10.16 -39.35 -0.40 -0.78 16 6 C -0.15 -1.62 9.63 -39.05 -0.38 -2.00 16 7 C 0.13 1.67 6.75 -83.02 -0.56 1.11 16 8 C 0.57 9.10 7.81 -12.19 -0.10 9.00 16 9 O -0.53 -10.08 15.96 5.35 0.09 -9.99 16 10 N -0.69 -10.87 5.18 -52.46 -0.27 -11.14 16 11 C 0.12 2.32 3.44 -65.66 -0.23 2.10 16 12 H 0.10 2.04 7.54 -51.93 -0.39 1.65 16 13 C -0.15 -2.70 6.59 -24.90 -0.16 -2.86 16 14 C 0.17 4.17 5.45 -3.07 -0.02 4.16 16 15 N -0.60 -15.75 3.39 -169.94 -0.58 -16.33 16 16 C -0.23 -6.49 10.26 -15.06 -0.15 -6.64 16 17 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 18 C -0.01 -0.24 5.45 -17.43 -0.09 -0.33 16 19 N -0.92 -27.15 10.45 55.49 0.58 -26.57 16 20 Si 0.91 22.37 29.56 -169.99 -5.02 17.34 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C 0.13 2.84 6.93 -2.41 -0.02 2.82 16 25 N -0.52 -6.38 8.39 -9.88 -0.08 -6.46 16 26 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 27 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 29 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.15 1.59 7.63 -52.48 -0.40 1.19 16 32 H 0.41 5.57 7.90 -40.82 -0.32 5.25 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.00 8.01 -51.93 -0.42 0.58 16 35 H 0.07 1.79 6.88 -51.93 -0.36 1.43 16 36 H 0.03 0.84 7.97 -51.92 -0.41 0.43 16 37 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 332.08 15.07 5.00 5.00 Total: -1.00 -33.02 332.08 -7.28 -40.30 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.23 Total: 1.73 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -1.58 Total: 9.42 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.35 Total: -60.50 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.11 Total: -13.30 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.02 -7.28 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015928742.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.249 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds