Wall clock time and date at job start Tue Mar 31 2020 06:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35662 * 117.00261 * 2 1 4 4 C 1.39282 * 119.62237 * 179.97438 * 3 2 1 5 5 C 1.38332 * 119.31079 * 180.02562 * 4 3 2 6 6 C 1.38783 * 118.55484 * 0.02562 * 5 4 3 7 7 C 1.39120 * 119.19015 * 359.97438 * 6 5 4 8 8 C 1.48157 * 119.69325 * 179.97438 * 7 6 5 9 9 O 1.21521 * 119.99623 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00645 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00637 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.88119 * 328.88242 * 11 10 8 13 13 C 1.55157 * 111.00779 * 205.00634 * 11 10 8 14 14 C 1.54321 * 102.93981 * 206.42160 * 13 11 10 15 15 N 1.47020 * 107.27348 * 22.19198 * 14 13 11 16 16 C 1.36929 * 125.64817 * 181.02587 * 15 14 13 17 17 H 1.08001 * 120.00390 * 185.86016 * 16 15 14 18 18 C 1.38815 * 120.00214 * 5.85300 * 16 15 14 19 19 N 1.31620 * 119.99646 * 7.32913 * 18 16 15 20 20 Si 1.86797 * 120.00191 * 187.32803 * 18 16 15 21 21 H 1.48501 * 109.47357 * 265.01605 * 20 18 16 22 22 H 1.48499 * 109.47206 * 25.01555 * 20 18 16 23 23 H 1.48494 * 109.47172 * 145.01502 * 20 18 16 24 24 C 1.47423 * 108.70333 * 1.28517 * 15 14 13 25 25 N 1.31906 * 119.61559 * 0.25654 * 3 2 1 26 26 H 1.09002 * 109.47606 * 59.99403 * 1 2 3 27 27 H 1.09004 * 109.47550 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47149 * 299.99674 * 1 2 3 29 29 H 1.08000 * 120.34832 * 0.02998 * 4 3 2 30 30 H 1.07994 * 120.72381 * 180.02562 * 5 4 3 31 31 H 1.08004 * 120.40382 * 179.97438 * 6 5 4 32 32 H 0.97010 * 119.99831 * 0.02562 * 10 8 7 33 33 H 1.08998 * 110.72558 * 88.05281 * 13 11 10 34 34 H 1.09005 * 110.87051 * 324.85510 * 13 11 10 35 35 H 1.08997 * 109.88191 * 262.76841 * 14 13 11 36 36 H 1.09009 * 110.00926 * 141.67978 * 14 13 11 37 37 H 0.97003 * 119.99469 * 179.97438 * 19 18 16 38 38 H 1.08998 * 110.36579 * 94.48111 * 24 15 14 39 39 H 1.09002 * 110.36870 * 216.80998 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4362 1.2724 0.0005 5 6 4.0576 2.5083 0.0011 6 6 3.2664 3.6486 0.0016 7 6 1.8818 3.5137 0.0010 8 6 1.0266 4.7235 0.0022 9 8 1.5353 5.8271 0.0031 10 7 -0.3155 4.6001 0.0011 11 6 -1.1611 5.7964 0.0016 12 1 -0.6738 6.6165 0.5291 13 6 -2.5545 5.4923 0.6126 14 6 -3.4638 6.5414 -0.0613 15 7 -2.7983 6.9630 -1.3026 16 6 -3.2707 7.8992 -2.1831 17 1 -2.7547 8.0721 -3.1160 18 6 -4.4131 8.6259 -1.8768 19 7 -4.9595 8.5213 -0.6840 20 14 -5.1748 9.7524 -3.1576 21 1 -4.6712 11.1357 -2.9624 22 1 -4.8061 9.2784 -4.5157 23 1 -6.6526 9.7386 -3.0128 24 6 -1.5411 6.2064 -1.4454 25 7 1.3191 2.3102 0.0051 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 4.0239 0.3663 0.0005 30 1 5.1348 2.5843 0.0011 31 1 3.7202 4.6287 0.0024 32 1 -0.7216 3.7191 0.0000 33 1 -2.5404 5.6315 1.6936 34 1 -2.8775 4.4824 0.3595 35 1 -3.5936 7.3985 0.5994 36 1 -4.4340 6.1010 -0.2919 37 1 -5.7575 9.0295 -0.4699 38 1 -1.6984 5.3226 -2.0636 39 1 -0.7647 6.8386 -1.8764 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015928742.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:46 Heat of formation + Delta-G solvation = -27.739991 kcal Electronic energy + Delta-G solvation = -22726.468257 eV Core-core repulsion = 19248.569057 eV Total energy + Delta-G solvation = -3477.899200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.93185 -40.69755 -39.13434 -38.47441 -35.73351 -34.09709 -33.33942 -31.91492 -31.00685 -29.02699 -28.24139 -26.67556 -25.37639 -23.90578 -22.48533 -22.03602 -21.60203 -19.68576 -18.94029 -18.76525 -17.36409 -17.08738 -17.00436 -16.92002 -16.70554 -16.16913 -15.82022 -15.59920 -15.14808 -14.71197 -14.37325 -14.22873 -14.16806 -13.93860 -13.76959 -13.21352 -12.97057 -12.76508 -12.67731 -12.45819 -12.16863 -12.15900 -12.04556 -11.85097 -11.70498 -11.54292 -11.01375 -10.75689 -10.72096 -10.21073 -9.61730 -8.93445 -7.86030 -5.25724 -0.43037 0.23300 1.45463 1.47251 1.56799 1.63817 1.91381 2.09168 2.48896 2.76966 2.93467 3.30020 3.63376 3.69188 3.90175 3.93944 4.00231 4.03336 4.15573 4.26547 4.47123 4.47251 4.48826 4.54327 4.68351 4.82212 4.82806 4.92809 4.94125 5.00760 5.12868 5.34453 5.37254 5.45065 5.56468 5.74141 6.10577 6.18099 6.34509 6.65518 7.05403 7.07783 7.71952 8.35990 9.21646 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027566 B = 0.003265 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.488641 B = 8574.694511 C = 9042.868690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.312 6.312 3 C 0.302 3.698 4 C -0.156 4.156 5 C -0.034 4.034 6 C -0.150 4.150 7 C 0.098 3.902 8 C 0.566 3.434 9 O -0.566 6.566 10 N -0.685 5.685 11 C 0.143 3.857 12 H 0.081 0.919 13 C -0.127 4.127 14 C 0.178 3.822 15 N -0.624 5.624 16 C -0.250 4.250 17 H 0.078 0.922 18 C -0.062 4.062 19 N -0.946 5.946 20 Si 0.981 3.019 21 H -0.286 1.286 22 H -0.270 1.270 23 H -0.289 1.289 24 C 0.129 3.871 25 N -0.529 5.529 26 H 0.054 0.946 27 H 0.123 0.877 28 H 0.058 0.942 29 H 0.178 0.822 30 H 0.192 0.808 31 H 0.151 0.849 32 H 0.418 0.582 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.032 0.968 36 H 0.007 0.993 37 H 0.249 0.751 38 H 0.031 0.969 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.575 -19.840 3.848 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.219 6.219 3 C 0.120 3.880 4 C -0.177 4.177 5 C -0.059 4.059 6 C -0.172 4.172 7 C -0.037 4.037 8 C 0.351 3.649 9 O -0.444 6.444 10 N -0.335 5.335 11 C 0.036 3.964 12 H 0.100 0.900 13 C -0.165 4.165 14 C 0.053 3.947 15 N -0.351 5.351 16 C -0.379 4.379 17 H 0.096 0.904 18 C -0.255 4.255 19 N -0.594 5.594 20 Si 0.808 3.192 21 H -0.213 1.213 22 H -0.195 1.195 23 H -0.216 1.216 24 C 0.002 3.998 25 N -0.257 5.257 26 H 0.073 0.927 27 H 0.141 0.859 28 H 0.077 0.923 29 H 0.195 0.805 30 H 0.209 0.791 31 H 0.169 0.831 32 H 0.255 0.745 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.051 0.949 36 H 0.025 0.975 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 15.913 -19.232 3.841 25.256 hybrid contribution -0.527 0.780 -0.624 1.129 sum 15.386 -18.452 3.217 24.240 Atomic orbital electron populations 1.23082 0.75968 1.04817 1.02312 1.86243 1.24144 1.23675 1.87855 1.20172 0.90535 0.84211 0.93097 1.21741 0.91177 1.01364 1.03375 1.21897 1.02653 0.89283 0.92041 1.22204 0.92366 1.02249 1.00376 1.20509 0.92685 0.89399 1.01155 1.18333 0.82595 0.87909 0.76017 1.90786 1.74482 1.27492 1.51663 1.45660 1.05194 1.10161 1.72471 1.21987 0.90611 0.87460 0.96294 0.90046 1.22969 0.92707 1.00149 1.00698 1.21031 0.92619 0.94175 0.86903 1.44671 1.20918 1.44892 1.24570 1.19423 1.07894 1.12522 0.98033 0.90449 1.25673 0.99354 1.01463 0.99017 1.70155 1.23155 1.45600 1.20524 0.85039 0.77221 0.78363 0.78542 1.21276 1.19491 1.21561 1.21962 0.87836 0.94540 0.95423 1.66994 1.41826 0.98324 1.18533 0.92700 0.85885 0.92345 0.80505 0.79109 0.83118 0.74458 0.89197 0.89318 0.94939 0.97516 0.94153 0.95142 0.95377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.38 113.37 1.18 1.65 16 2 O -0.31 -5.60 10.47 -89.78 -0.94 -6.54 16 3 C 0.30 5.88 7.49 84.93 0.64 6.51 16 4 C -0.16 -2.08 10.05 22.54 0.23 -1.86 16 5 C -0.03 -0.41 10.16 22.42 0.23 -0.19 16 6 C -0.15 -3.00 9.63 22.61 0.22 -2.78 16 7 C 0.10 2.51 6.75 41.84 0.28 2.80 16 8 C 0.57 18.23 7.81 86.88 0.68 18.90 16 9 O -0.57 -22.03 15.96 -3.78 -0.06 -22.09 16 10 N -0.68 -21.17 5.18 -438.17 -2.27 -23.44 16 11 C 0.14 5.37 3.44 46.46 0.16 5.53 16 12 H 0.08 3.41 7.54 -2.38 -0.02 3.39 16 13 C -0.13 -4.56 6.59 31.78 0.21 -4.35 16 14 C 0.18 8.84 5.45 86.73 0.47 9.32 16 15 N -0.62 -33.55 3.39 -691.56 -2.35 -35.90 16 16 C -0.25 -14.61 10.26 84.04 0.86 -13.75 16 17 H 0.08 4.39 7.84 -2.91 -0.02 4.37 16 18 C -0.06 -3.58 5.45 84.86 0.46 -3.12 16 19 N -0.95 -57.41 10.45 21.65 0.23 -57.18 16 20 Si 0.98 46.67 29.56 68.60 2.03 48.70 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 C 0.13 5.78 6.93 86.93 0.60 6.39 16 25 N -0.53 -12.34 8.39 -298.21 -2.50 -14.84 16 26 H 0.05 0.86 8.11 -2.39 -0.02 0.84 16 27 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.06 0.87 8.10 -2.39 -0.02 0.85 16 29 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 30 H 0.19 0.71 8.06 -2.91 -0.02 0.68 16 31 H 0.15 3.00 7.63 -2.91 -0.02 2.98 16 32 H 0.42 11.01 7.90 -92.70 -0.73 10.27 16 33 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.09 2.73 8.01 -2.38 -0.02 2.71 16 35 H 0.03 1.82 6.88 -2.39 -0.02 1.81 16 36 H 0.01 0.36 7.97 -2.38 -0.02 0.34 16 37 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 38 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -74.34 332.08 0.69 -73.66 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.34 Total: 12.60 kcal Atomic # 6 Polarization: 18.83 SS G_CDS: 6.22 Total: 25.05 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -6.89 Total: -131.36 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -1.00 Total: -28.63 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -74.34 0.69 -73.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015928742.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.918 kcal (2) G-P(sol) polarization free energy of solvation -74.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds