Wall clock time and date at job start Tue Mar 31 2020 06:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35497 * 117.00035 * 2 1 4 4 C 1.39163 * 119.52811 * 180.02562 * 3 2 1 5 5 C 1.37960 * 119.26503 * 179.76326 * 4 3 2 6 6 C 1.40283 * 118.35737 * 0.47509 * 5 4 3 7 7 C 1.47610 * 120.49889 * 179.75510 * 6 5 4 8 8 O 1.21578 * 120.00407 * 155.64593 * 7 6 5 9 9 N 1.34775 * 119.99996 * 335.64211 * 7 6 5 10 10 C 1.47429 * 125.64925 * 354.12271 * 9 7 6 11 11 C 1.54912 * 104.83139 * 204.08693 * 10 9 7 12 12 C 1.55151 * 101.58465 * 322.99078 * 11 10 9 13 13 H 1.08998 * 110.72154 * 277.14182 * 12 11 10 14 14 N 1.46497 * 110.72039 * 153.86289 * 12 11 10 15 15 C 1.36944 * 119.99824 * 160.02223 * 14 12 11 16 16 H 1.07996 * 120.00085 * 0.02562 * 15 14 12 17 17 C 1.38817 * 119.99791 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00067 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99762 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46923 * 60.00559 * 19 17 15 21 21 H 1.48500 * 109.47157 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47132 * 300.00357 * 19 17 15 23 23 C 1.47023 * 125.64997 * 174.07593 * 9 7 6 24 24 C 1.39522 * 119.00154 * 359.48648 * 6 5 4 25 25 N 1.31670 * 120.62964 * 0.28795 * 24 6 5 26 26 H 1.09004 * 109.46829 * 300.00133 * 1 2 3 27 27 H 1.09000 * 109.46819 * 59.99737 * 1 2 3 28 28 H 1.08995 * 109.46911 * 180.02562 * 1 2 3 29 29 H 1.08004 * 120.36713 * 359.97438 * 4 3 2 30 30 H 1.07999 * 120.82114 * 180.23198 * 5 4 3 31 31 H 1.08993 * 110.36428 * 322.92639 * 10 9 7 32 32 H 1.09001 * 110.36904 * 85.25117 * 10 9 7 33 33 H 1.09002 * 110.99954 * 81.06512 * 11 10 9 34 34 H 1.09000 * 111.00193 * 204.91071 * 11 10 9 35 35 H 0.96994 * 120.00535 * 340.02553 * 14 12 11 36 36 H 0.97001 * 120.00139 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.88497 * 298.39829 * 23 9 7 38 38 H 1.09000 * 109.88445 * 59.56393 * 23 9 7 39 39 H 1.07999 * 119.68701 * 180.27895 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2687 -0.0005 5 6 4.0552 2.5007 -0.0055 6 6 3.2525 3.6512 0.0004 7 6 3.8669 4.9934 0.0009 8 8 3.2460 5.9464 -0.4286 9 7 5.1161 5.1624 0.4775 10 6 5.9321 4.1261 1.1362 11 6 6.9392 4.9120 2.0125 12 6 7.2467 6.1370 1.1114 13 1 8.0096 5.8906 0.3729 14 7 7.6591 7.2858 1.9214 15 6 8.3558 8.3147 1.3458 16 1 8.6008 8.2793 0.2946 17 6 8.7461 9.4036 2.1132 18 7 8.4470 9.4469 3.3942 19 14 9.6958 10.8074 1.3278 20 1 8.8821 11.4081 0.2405 21 1 9.9916 11.8398 2.3534 22 1 10.9690 10.2900 0.7654 23 6 5.8914 6.4106 0.4258 24 6 1.8647 3.5078 0.0001 25 7 1.3139 2.3118 0.0000 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 4.0211 0.3618 -0.0005 30 1 5.1324 2.5776 -0.0098 31 1 5.3047 3.4883 1.7587 32 1 6.4609 3.5300 0.3925 33 1 6.4807 5.2228 2.9513 34 1 7.8395 4.3251 2.1948 35 1 7.4387 7.3178 2.8655 36 1 8.7200 10.2076 3.9306 37 1 6.0532 6.7038 -0.6115 38 1 5.3596 7.1996 0.9576 39 1 1.2361 4.3860 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019114921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:58 Heat of formation + Delta-G solvation = -6.053185 kcal Electronic energy + Delta-G solvation = -22527.513087 eV Core-core repulsion = 19050.554297 eV Total energy + Delta-G solvation = -3476.958790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.10096 -39.73387 -38.05331 -37.18941 -34.31143 -32.97751 -31.65784 -30.95672 -29.69006 -27.80506 -27.53374 -24.84889 -23.72002 -23.50301 -22.37957 -20.42413 -19.58797 -18.70306 -17.64007 -17.29214 -16.80221 -16.40072 -16.14853 -15.58807 -14.85705 -14.66690 -14.62028 -14.07306 -13.88691 -13.54768 -13.44933 -13.22330 -13.13971 -12.76784 -12.45494 -12.20303 -11.95062 -11.58147 -11.46333 -11.18267 -10.85022 -10.76766 -10.45685 -10.24287 -10.19188 -10.06399 -9.78882 -9.70200 -9.02014 -8.85358 -8.38282 -7.11579 -5.85639 -3.16849 0.56117 0.89962 2.70327 2.81810 3.10695 3.40936 3.45816 3.46350 3.61085 3.97055 4.41161 4.51888 4.56688 4.71239 4.73257 4.86327 4.95796 4.98533 5.14727 5.21460 5.29996 5.33912 5.41396 5.55621 5.65758 5.67929 5.77747 5.86935 6.00006 6.05949 6.24350 6.31029 6.45346 6.62662 6.83666 6.84727 7.46147 7.62721 7.68930 8.26168 8.31998 9.43696 9.96552 10.31081 11.36253 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.043343 B = 0.002879 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.858763 B = 9724.335811 C =10029.877889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.306 6.306 3 C 0.335 3.665 4 C -0.196 4.196 5 C -0.020 4.020 6 C -0.215 4.215 7 C 0.575 3.425 8 O -0.539 6.539 9 N -0.607 5.607 10 C 0.096 3.904 11 C -0.141 4.141 12 C 0.172 3.828 13 H 0.066 0.934 14 N -0.712 5.712 15 C -0.250 4.250 16 H 0.072 0.928 17 C -0.008 4.008 18 N -0.930 5.930 19 Si 0.909 3.091 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.082 3.918 24 C 0.199 3.801 25 N -0.544 5.544 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.148 0.852 30 H 0.158 0.842 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.387 0.613 36 H 0.258 0.742 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.949 -20.505 -5.246 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.212 6.212 3 C 0.156 3.844 4 C -0.217 4.217 5 C -0.045 4.045 6 C -0.220 4.220 7 C 0.363 3.637 8 O -0.417 6.417 9 N -0.340 5.340 10 C -0.027 4.027 11 C -0.180 4.180 12 C 0.060 3.940 13 H 0.084 0.916 14 N -0.352 5.352 15 C -0.381 4.381 16 H 0.090 0.910 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.740 3.260 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.043 4.043 24 C 0.042 3.958 25 N -0.268 5.268 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.165 0.835 30 H 0.175 0.825 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.029 -20.213 -5.575 24.173 hybrid contribution 1.008 0.979 -0.094 1.408 sum -11.021 -19.234 -5.669 22.881 Atomic orbital electron populations 1.22915 0.76882 1.03090 1.02791 1.86207 1.23260 1.24570 1.87165 1.20129 0.89569 0.84799 0.89921 1.21019 0.91819 0.99573 1.09284 1.22127 1.01587 0.90426 0.90358 1.20834 0.95591 0.94385 1.11235 1.17571 0.80294 0.87509 0.78303 1.90798 1.61354 1.41651 1.47933 1.48445 1.13831 1.14078 1.57623 1.22608 0.93304 0.91371 0.95458 1.23094 0.98402 0.97567 0.98949 1.21212 0.92154 0.87720 0.92936 0.91569 1.42361 1.65318 1.18586 1.08978 1.19206 1.27785 0.97019 0.94118 0.90957 1.24779 1.01245 0.98719 0.95722 1.69647 1.51011 1.31680 1.05365 0.86242 0.79779 0.81945 0.78054 1.21074 1.21632 1.21126 1.23311 0.94143 0.85332 1.01492 1.22610 0.91551 0.93692 0.87941 1.67426 1.40365 0.98602 1.20365 0.92037 0.92059 0.88487 0.83454 0.82503 0.90723 0.91141 0.90340 0.89803 0.77822 0.93259 0.92199 0.90621 0.81103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.37 101.05 1.05 1.32 16 2 O -0.31 -3.02 10.46 -18.18 -0.19 -3.21 16 3 C 0.33 3.67 7.49 -16.96 -0.13 3.54 16 4 C -0.20 -1.84 10.02 -39.34 -0.39 -2.24 16 5 C -0.02 -0.20 8.18 -38.91 -0.32 -0.52 16 6 C -0.21 -2.74 5.68 -104.83 -0.60 -3.33 16 7 C 0.58 9.24 7.65 -12.44 -0.10 9.14 16 8 O -0.54 -10.64 16.94 5.30 0.09 -10.55 16 9 N -0.61 -9.30 3.33 -171.71 -0.57 -9.87 16 10 C 0.10 1.11 5.00 -2.53 -0.01 1.09 16 11 C -0.14 -1.97 6.69 -24.58 -0.16 -2.14 16 12 C 0.17 3.13 3.59 -66.10 -0.24 2.90 16 13 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 14 N -0.71 -16.90 5.18 -51.65 -0.27 -17.17 16 15 C -0.25 -6.68 9.98 -15.05 -0.15 -6.83 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 18 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 19 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.08 1.51 6.63 -3.06 -0.02 1.49 16 24 C 0.20 2.48 10.75 -17.14 -0.18 2.29 16 25 N -0.54 -6.51 9.18 -12.96 -0.12 -6.63 16 26 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 27 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.16 1.26 4.70 -52.49 -0.25 1.01 16 31 H 0.07 0.74 6.84 -51.93 -0.36 0.38 16 32 H 0.07 0.64 6.84 -51.93 -0.35 0.28 16 33 H 0.08 1.18 8.00 -51.93 -0.42 0.76 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.39 9.79 7.71 -40.82 -0.31 9.47 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.62 8.03 -51.93 -0.42 1.21 16 39 H 0.17 2.02 7.84 -52.49 -0.41 1.61 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -32.49 329.46 -6.75 -39.25 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.02 Total: 6.53 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.35 Total: 6.41 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.23 Total: -60.30 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.10 Total: -13.76 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.49 -6.75 -39.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019114921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.196 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds