Wall clock time and date at job start Tue Mar 31 2020 06:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35497 * 117.00035 * 2 1 4 4 C 1.39163 * 119.52811 * 180.02562 * 3 2 1 5 5 C 1.37960 * 119.26503 * 179.76326 * 4 3 2 6 6 C 1.40283 * 118.35737 * 0.47509 * 5 4 3 7 7 C 1.47610 * 120.49889 * 179.75510 * 6 5 4 8 8 O 1.21578 * 120.00407 * 155.64593 * 7 6 5 9 9 N 1.34775 * 119.99996 * 335.64211 * 7 6 5 10 10 C 1.47429 * 125.64925 * 354.12271 * 9 7 6 11 11 C 1.54912 * 104.83139 * 204.08693 * 10 9 7 12 12 C 1.55151 * 101.58465 * 322.99078 * 11 10 9 13 13 H 1.08998 * 110.72154 * 277.14182 * 12 11 10 14 14 N 1.46497 * 110.72039 * 153.86289 * 12 11 10 15 15 C 1.36944 * 119.99824 * 160.02223 * 14 12 11 16 16 H 1.07996 * 120.00085 * 0.02562 * 15 14 12 17 17 C 1.38817 * 119.99791 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00067 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99762 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46923 * 60.00559 * 19 17 15 21 21 H 1.48500 * 109.47157 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47132 * 300.00357 * 19 17 15 23 23 C 1.47023 * 125.64997 * 174.07593 * 9 7 6 24 24 C 1.39522 * 119.00154 * 359.48648 * 6 5 4 25 25 N 1.31670 * 120.62964 * 0.28795 * 24 6 5 26 26 H 1.09004 * 109.46829 * 300.00133 * 1 2 3 27 27 H 1.09000 * 109.46819 * 59.99737 * 1 2 3 28 28 H 1.08995 * 109.46911 * 180.02562 * 1 2 3 29 29 H 1.08004 * 120.36713 * 359.97438 * 4 3 2 30 30 H 1.07999 * 120.82114 * 180.23198 * 5 4 3 31 31 H 1.08993 * 110.36428 * 322.92639 * 10 9 7 32 32 H 1.09001 * 110.36904 * 85.25117 * 10 9 7 33 33 H 1.09002 * 110.99954 * 81.06512 * 11 10 9 34 34 H 1.09000 * 111.00193 * 204.91071 * 11 10 9 35 35 H 0.96994 * 120.00535 * 340.02553 * 14 12 11 36 36 H 0.97001 * 120.00139 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.88497 * 298.39829 * 23 9 7 38 38 H 1.09000 * 109.88445 * 59.56393 * 23 9 7 39 39 H 1.07999 * 119.68701 * 180.27895 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2687 -0.0005 5 6 4.0552 2.5007 -0.0055 6 6 3.2525 3.6512 0.0004 7 6 3.8669 4.9934 0.0009 8 8 3.2460 5.9464 -0.4286 9 7 5.1161 5.1624 0.4775 10 6 5.9321 4.1261 1.1362 11 6 6.9392 4.9120 2.0125 12 6 7.2467 6.1370 1.1114 13 1 8.0096 5.8906 0.3729 14 7 7.6591 7.2858 1.9214 15 6 8.3558 8.3147 1.3458 16 1 8.6008 8.2793 0.2946 17 6 8.7461 9.4036 2.1132 18 7 8.4470 9.4469 3.3942 19 14 9.6958 10.8074 1.3278 20 1 8.8821 11.4081 0.2405 21 1 9.9916 11.8398 2.3534 22 1 10.9690 10.2900 0.7654 23 6 5.8914 6.4106 0.4258 24 6 1.8647 3.5078 0.0001 25 7 1.3139 2.3118 0.0000 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 4.0211 0.3618 -0.0005 30 1 5.1324 2.5776 -0.0098 31 1 5.3047 3.4883 1.7587 32 1 6.4609 3.5300 0.3925 33 1 6.4807 5.2228 2.9513 34 1 7.8395 4.3251 2.1948 35 1 7.4387 7.3178 2.8655 36 1 8.7200 10.2076 3.9306 37 1 6.0532 6.7038 -0.6115 38 1 5.3596 7.1996 0.9576 39 1 1.2361 4.3860 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019114921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:58 Heat of formation + Delta-G solvation = -30.641916 kcal Electronic energy + Delta-G solvation = -22528.579334 eV Core-core repulsion = 19050.554297 eV Total energy + Delta-G solvation = -3478.025037 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.01761 -40.84652 -39.01403 -38.43810 -36.01246 -34.06623 -33.12549 -32.02446 -31.07517 -29.13055 -28.34851 -26.27801 -25.01375 -24.57385 -23.48361 -21.76299 -20.84481 -19.49100 -19.28723 -18.50719 -17.89004 -17.54491 -17.07050 -16.80322 -16.46977 -15.67906 -15.52355 -15.31142 -15.27976 -14.93234 -14.54317 -14.36901 -14.22748 -14.11875 -13.59429 -13.37020 -13.11500 -12.85422 -12.78783 -12.44919 -12.41072 -12.22013 -12.13703 -11.74360 -11.62159 -11.30551 -11.03002 -11.00088 -10.73488 -9.83989 -9.54885 -9.09085 -7.96567 -5.26527 -0.35362 0.10393 1.48195 1.50918 1.56472 1.67800 1.85720 2.04830 2.55820 2.67990 3.13891 3.32960 3.44070 3.62837 3.77173 3.88487 3.92789 3.96622 4.15423 4.34340 4.36478 4.42442 4.43458 4.53323 4.60982 4.65978 4.72479 4.80104 4.89708 4.95766 5.01212 5.17430 5.21743 5.28975 5.39478 5.52966 6.07499 6.25169 6.45348 6.63816 7.01639 7.32155 8.05006 8.27158 9.26168 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.043343 B = 0.002879 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.858763 B = 9724.335811 C =10029.877889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C 0.326 3.674 4 C -0.184 4.184 5 C -0.007 4.007 6 C -0.227 4.227 7 C 0.573 3.427 8 O -0.589 6.589 9 N -0.606 5.606 10 C 0.097 3.903 11 C -0.131 4.131 12 C 0.165 3.835 13 H 0.078 0.922 14 N -0.726 5.726 15 C -0.246 4.246 16 H 0.079 0.921 17 C -0.072 4.072 18 N -0.967 5.967 19 Si 0.971 3.029 20 H -0.283 1.283 21 H -0.297 1.297 22 H -0.273 1.273 23 C 0.093 3.907 24 C 0.191 3.809 25 N -0.556 5.556 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.127 0.873 29 H 0.182 0.818 30 H 0.184 0.816 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.376 0.624 36 H 0.251 0.749 37 H 0.050 0.950 38 H 0.033 0.967 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.167 -23.799 -6.063 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.215 6.215 3 C 0.147 3.853 4 C -0.204 4.204 5 C -0.032 4.032 6 C -0.233 4.233 7 C 0.363 3.637 8 O -0.471 6.471 9 N -0.338 5.338 10 C -0.024 4.024 11 C -0.170 4.170 12 C 0.055 3.945 13 H 0.096 0.904 14 N -0.365 5.365 15 C -0.378 4.378 16 H 0.097 0.903 17 C -0.265 4.265 18 N -0.617 5.617 19 Si 0.800 3.200 20 H -0.209 1.209 21 H -0.223 1.223 22 H -0.199 1.199 23 C -0.033 4.033 24 C 0.034 3.966 25 N -0.280 5.280 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.145 0.855 29 H 0.199 0.801 30 H 0.201 0.799 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.208 0.792 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.245 -23.583 -6.420 26.904 hybrid contribution 0.651 1.858 0.116 1.972 sum -10.594 -21.725 -6.304 24.979 Atomic orbital electron populations 1.23129 0.75627 1.04984 1.02379 1.86218 1.24538 1.23897 1.86819 1.20538 0.90557 0.84800 0.89421 1.21371 0.91246 1.00484 1.07335 1.22338 1.02487 0.89375 0.89009 1.20551 0.95780 0.93329 1.13636 1.18102 0.79988 0.88366 0.77247 1.90765 1.62592 1.43614 1.50173 1.48456 1.13903 1.13837 1.57631 1.22938 0.92776 0.90452 0.96215 1.23048 1.00197 0.95916 0.97796 1.21454 0.91713 0.87694 0.93639 0.90437 1.42537 1.65282 1.19728 1.08948 1.19610 1.26328 0.97484 0.94351 0.90311 1.25557 1.03236 1.01377 0.96311 1.69797 1.53059 1.32218 1.06664 0.85257 0.78882 0.78991 0.76907 1.20899 1.22341 1.19859 1.22866 0.94244 0.85978 1.00191 1.22536 0.91693 0.93895 0.88492 1.67406 1.40890 0.98713 1.21005 0.92446 0.92489 0.85498 0.80106 0.79920 0.88075 0.87013 0.91765 0.87021 0.79176 0.93977 0.93157 0.94829 0.81889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.37 113.37 1.18 1.58 16 2 O -0.31 -5.24 10.46 -87.98 -0.92 -6.16 16 3 C 0.33 6.29 7.49 84.83 0.64 6.92 16 4 C -0.18 -2.68 10.02 22.43 0.22 -2.45 16 5 C -0.01 -0.12 8.18 22.70 0.19 0.07 16 6 C -0.23 -5.45 5.68 -20.00 -0.11 -5.56 16 7 C 0.57 18.28 7.65 86.72 0.66 18.95 16 8 O -0.59 -24.26 16.94 -3.96 -0.07 -24.33 16 9 N -0.61 -17.88 3.33 -815.45 -2.71 -20.59 16 10 C 0.10 1.88 5.00 86.86 0.43 2.31 16 11 C -0.13 -3.32 6.69 31.98 0.21 -3.10 16 12 C 0.17 5.87 3.59 46.18 0.17 6.04 16 13 H 0.08 2.61 8.12 -2.39 -0.02 2.59 16 14 N -0.73 -34.81 5.18 -317.33 -1.64 -36.45 16 15 C -0.25 -13.22 9.98 84.03 0.84 -12.38 16 16 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 17 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 18 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 19 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 C 0.09 3.47 6.63 86.73 0.57 4.05 16 24 C 0.19 4.69 10.75 85.03 0.91 5.61 16 25 N -0.56 -12.66 9.18 -307.81 -2.82 -15.49 16 26 H 0.06 0.76 8.10 -2.38 -0.02 0.74 16 27 H 0.06 0.75 8.10 -2.39 -0.02 0.73 16 28 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 30 H 0.18 1.88 4.70 -2.91 -0.01 1.87 16 31 H 0.10 1.52 6.84 -2.39 -0.02 1.50 16 32 H 0.11 1.34 6.84 -2.39 -0.02 1.33 16 33 H 0.06 1.83 8.00 -2.39 -0.02 1.82 16 34 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.38 19.48 7.71 -92.71 -0.72 18.77 16 36 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.03 1.52 8.03 -2.39 -0.02 1.50 16 39 H 0.16 4.09 7.84 -2.91 -0.02 4.06 16 Total: -1.00 -73.89 329.46 0.89 -73.00 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.36 Total: 22.02 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 6.38 Total: 18.42 kcal Atomic # 7 Polarization: -123.71 SS G_CDS: -6.90 Total: -130.61 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.99 Total: -30.48 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -73.89 0.89 -73.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019114921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.359 kcal (2) G-P(sol) polarization free energy of solvation -73.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds