Wall clock time and date at job start Tue Mar 31 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35687 * 116.99984 * 2 1 4 4 C 1.38897 * 119.62502 * 179.97438 * 3 2 1 5 5 C 1.39573 * 118.95043 * 179.97438 * 4 3 2 6 6 C 1.48157 * 120.89281 * 180.02562 * 5 4 3 7 7 O 1.21511 * 119.99875 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99826 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00202 * 180.02562 * 8 6 5 10 10 H 1.09007 * 112.84404 * 336.20076 * 9 8 6 11 11 C 1.54054 * 113.69581 * 107.46639 * 9 8 6 12 12 C 1.53775 * 86.98523 * 139.99351 * 11 9 8 13 13 H 1.08998 * 113.61683 * 219.98054 * 12 11 9 14 14 N 1.46505 * 113.61553 * 89.16124 * 12 11 9 15 15 C 1.36931 * 119.99788 * 105.86383 * 14 12 11 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 12 17 17 C 1.38817 * 119.99680 * 179.72358 * 15 14 12 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48496 * 109.47141 * 59.99751 * 19 17 15 21 21 H 1.48490 * 109.47071 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 300.00028 * 19 17 15 23 23 C 1.53778 * 113.61538 * 205.00383 * 9 8 6 24 24 C 1.39971 * 118.21400 * 0.27187 * 5 4 3 25 25 C 1.37981 * 119.13192 * 359.48133 * 24 5 4 26 26 N 1.31905 * 120.97665 * 0.53271 * 25 24 5 27 27 H 1.08998 * 109.47229 * 299.99890 * 1 2 3 28 28 H 1.08998 * 109.46947 * 59.99832 * 1 2 3 29 29 H 1.08996 * 109.47186 * 180.02562 * 1 2 3 30 30 H 1.08010 * 120.52443 * 359.97438 * 4 3 2 31 31 H 0.96997 * 120.00246 * 359.97438 * 8 6 5 32 32 H 1.08997 * 113.61101 * 25.48559 * 11 9 8 33 33 H 1.09002 * 113.69186 * 254.50766 * 11 9 8 34 34 H 0.97000 * 119.99792 * 285.86177 * 14 12 11 35 35 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 36 36 H 1.08997 * 113.61545 * 105.38588 * 23 9 8 37 37 H 1.08996 * 113.61634 * 334.47786 * 23 9 8 38 38 H 1.07999 * 120.43638 * 179.72486 * 24 5 4 39 39 H 1.08002 * 119.50796 * 180.26976 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2726 0.0005 5 6 4.0515 2.5236 0.0000 6 6 5.5283 2.6416 0.0000 7 8 6.2177 1.6410 0.0000 8 7 6.1071 3.8587 -0.0011 9 6 7.5674 3.9755 -0.0017 10 1 8.0627 3.0933 0.4041 11 6 8.1504 4.4460 -1.3478 12 6 9.1299 5.3049 -0.5309 13 1 9.3058 6.2922 -0.9580 14 7 10.3698 4.6078 -0.1799 15 6 11.5359 4.9168 -0.8277 16 1 11.5418 5.6746 -1.5972 17 6 12.7118 4.2603 -0.4911 18 7 12.7047 3.3371 0.4469 19 14 14.3042 4.6872 -1.3695 20 1 14.6196 6.1220 -1.1529 21 1 15.4063 3.8507 -0.8306 22 1 14.1521 4.4279 -2.8237 23 6 8.0799 5.2979 0.5927 24 6 3.2394 3.6637 0.0048 25 6 1.8680 3.5116 -0.0011 26 7 1.3179 2.3127 -0.0006 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 4.0231 0.3683 0.0014 31 1 5.5568 4.6575 -0.0022 32 1 7.4512 5.0303 -1.9460 33 1 8.6351 3.6524 -1.9165 34 1 10.3645 3.9274 0.5115 35 1 13.5263 2.8781 0.6819 36 1 8.5079 5.1917 1.5896 37 1 7.3617 6.1149 0.5242 38 1 3.6805 4.6495 0.0090 39 1 1.2357 4.3872 -0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020339646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:41 Heat of formation + Delta-G solvation = 3.245113 kcal Electronic energy + Delta-G solvation = -22033.623521 eV Core-core repulsion = 18557.067935 eV Total energy + Delta-G solvation = -3476.555585 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.10996 -39.80587 -38.34227 -37.70262 -34.20637 -33.15165 -32.40672 -31.01896 -29.68872 -27.67175 -25.45985 -25.15755 -23.89854 -23.64888 -22.56495 -20.81190 -19.32896 -18.35327 -17.63493 -17.35438 -16.63283 -16.35470 -16.06640 -15.78828 -15.00592 -14.84915 -14.66781 -14.41729 -14.02553 -13.99369 -13.63369 -13.12001 -12.79298 -12.50711 -12.16187 -12.07151 -12.01277 -11.69280 -11.56655 -10.87728 -10.82718 -10.37142 -10.31956 -10.21459 -10.19764 -9.97241 -9.74894 -9.66697 -8.93934 -8.89656 -8.79440 -7.02440 -5.80075 -3.10441 0.42972 0.79105 2.62380 2.77257 3.18138 3.43147 3.47488 3.48842 3.56099 3.93135 4.35093 4.55176 4.60780 4.70526 4.74136 4.93839 4.97974 5.02377 5.18705 5.26905 5.34334 5.36655 5.44061 5.46022 5.72746 5.84012 5.90400 5.98290 6.04137 6.13902 6.31231 6.56175 6.67133 6.73472 6.85596 6.98327 7.42298 7.50724 7.67878 8.16090 8.37961 9.48720 10.04518 10.38432 11.41970 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.039983 B = 0.002590 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.132149 B =10807.453166 C =11252.808141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.305 6.305 3 C 0.318 3.682 4 C -0.133 4.133 5 C -0.047 4.047 6 C 0.552 3.448 7 O -0.521 6.521 8 N -0.706 5.706 9 C 0.123 3.877 10 H 0.116 0.884 11 C -0.184 4.184 12 C 0.172 3.828 13 H 0.068 0.932 14 N -0.705 5.705 15 C -0.247 4.247 16 H 0.072 0.928 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.910 3.090 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.163 4.163 24 C -0.183 4.183 25 C 0.137 3.863 26 N -0.530 5.530 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.156 0.844 31 H 0.397 0.603 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.143 0.857 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.833 1.189 -0.086 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.139 3.861 4 C -0.154 4.154 5 C -0.058 4.058 6 C 0.337 3.663 7 O -0.397 6.397 8 N -0.356 5.356 9 C 0.020 3.980 10 H 0.134 0.866 11 C -0.226 4.226 12 C 0.059 3.941 13 H 0.086 0.914 14 N -0.344 5.344 15 C -0.378 4.378 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.577 5.577 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.203 4.203 24 C -0.203 4.203 25 C -0.018 4.018 26 N -0.254 5.254 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.173 0.827 31 H 0.232 0.768 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.220 0.780 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.160 0.840 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -25.903 0.157 -0.162 25.904 hybrid contribution 1.107 0.514 -0.258 1.248 sum -24.795 0.671 -0.420 24.808 Atomic orbital electron populations 1.22885 0.76999 1.03135 1.02475 1.86275 1.23054 1.24145 1.87688 1.19686 0.89002 0.84837 0.92580 1.21184 0.91892 0.99364 1.03009 1.20276 0.94224 0.93263 0.98032 1.18113 0.86501 0.84307 0.77371 1.90831 1.63986 1.36358 1.48537 1.46032 1.08642 1.07137 1.73794 1.22815 0.77021 0.99407 0.98760 0.86577 1.24381 0.99901 1.01803 0.96540 1.20902 0.85642 0.95029 0.92546 0.91355 1.42193 1.02759 1.44804 1.44646 1.19213 0.86067 1.17450 1.15061 0.90962 1.24791 0.98040 0.98843 0.99052 1.69655 1.27340 1.27671 1.33065 0.86232 0.83165 0.77529 0.79018 1.21184 1.21658 1.21174 1.23888 0.99515 0.95786 1.01096 1.22173 0.94931 0.99037 1.04208 1.22354 0.92523 0.93631 0.93332 1.67180 1.41277 0.98948 1.18032 0.92219 0.92208 0.88467 0.82674 0.76821 0.91195 0.90856 0.77952 0.93282 0.90689 0.90220 0.83964 0.81680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.34 16 2 O -0.31 -3.30 10.47 -18.76 -0.20 -3.49 16 3 C 0.32 3.64 7.49 -17.16 -0.13 3.52 16 4 C -0.13 -1.63 9.61 -38.84 -0.37 -2.00 16 5 C -0.05 -0.55 5.91 -104.68 -0.62 -1.17 16 6 C 0.55 8.05 7.80 -12.19 -0.10 7.96 16 7 O -0.52 -9.93 16.04 5.36 0.09 -9.84 16 8 N -0.71 -8.95 5.32 -53.72 -0.29 -9.23 16 9 C 0.12 1.97 4.13 -66.98 -0.28 1.69 16 10 H 0.12 2.26 7.46 -51.92 -0.39 1.87 16 11 C -0.18 -3.13 7.70 -25.78 -0.20 -3.33 16 12 C 0.17 3.26 4.55 -67.11 -0.31 2.95 16 13 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 14 N -0.71 -17.41 5.31 -52.63 -0.28 -17.69 16 15 C -0.25 -6.78 9.97 -15.06 -0.15 -6.93 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 19 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 C -0.16 -2.45 7.57 -25.91 -0.20 -2.65 16 24 C -0.18 -1.52 9.61 -39.03 -0.38 -1.90 16 25 C 0.14 1.09 11.17 -17.61 -0.20 0.89 16 26 N -0.53 -5.44 9.18 -13.38 -0.12 -5.56 16 27 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.16 1.98 7.74 -52.48 -0.41 1.58 16 31 H 0.40 3.56 6.87 -40.82 -0.28 3.28 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.39 10.21 7.90 -40.82 -0.32 9.89 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 38 H 0.14 0.76 6.53 -52.49 -0.34 0.41 16 39 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -33.70 337.34 -7.06 -40.76 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.08 Total: 10.14 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.96 Total: -0.03 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.04 Total: -59.86 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.11 Total: -13.33 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.70 -7.06 -40.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020339646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.001 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds