Wall clock time and date at job start Tue Mar 31 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35687 * 116.99984 * 2 1 4 4 C 1.38897 * 119.62502 * 179.97438 * 3 2 1 5 5 C 1.39573 * 118.95043 * 179.97438 * 4 3 2 6 6 C 1.48157 * 120.89281 * 180.02562 * 5 4 3 7 7 O 1.21511 * 119.99875 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99826 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00202 * 180.02562 * 8 6 5 10 10 H 1.09007 * 112.84404 * 336.20076 * 9 8 6 11 11 C 1.54054 * 113.69581 * 107.46639 * 9 8 6 12 12 C 1.53775 * 86.98523 * 139.99351 * 11 9 8 13 13 H 1.08998 * 113.61683 * 219.98054 * 12 11 9 14 14 N 1.46505 * 113.61553 * 89.16124 * 12 11 9 15 15 C 1.36931 * 119.99788 * 105.86383 * 14 12 11 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 12 17 17 C 1.38817 * 119.99680 * 179.72358 * 15 14 12 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48496 * 109.47141 * 59.99751 * 19 17 15 21 21 H 1.48490 * 109.47071 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 300.00028 * 19 17 15 23 23 C 1.53778 * 113.61538 * 205.00383 * 9 8 6 24 24 C 1.39971 * 118.21400 * 0.27187 * 5 4 3 25 25 C 1.37981 * 119.13192 * 359.48133 * 24 5 4 26 26 N 1.31905 * 120.97665 * 0.53271 * 25 24 5 27 27 H 1.08998 * 109.47229 * 299.99890 * 1 2 3 28 28 H 1.08998 * 109.46947 * 59.99832 * 1 2 3 29 29 H 1.08996 * 109.47186 * 180.02562 * 1 2 3 30 30 H 1.08010 * 120.52443 * 359.97438 * 4 3 2 31 31 H 0.96997 * 120.00246 * 359.97438 * 8 6 5 32 32 H 1.08997 * 113.61101 * 25.48559 * 11 9 8 33 33 H 1.09002 * 113.69186 * 254.50766 * 11 9 8 34 34 H 0.97000 * 119.99792 * 285.86177 * 14 12 11 35 35 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 36 36 H 1.08997 * 113.61545 * 105.38588 * 23 9 8 37 37 H 1.08996 * 113.61634 * 334.47786 * 23 9 8 38 38 H 1.07999 * 120.43638 * 179.72486 * 24 5 4 39 39 H 1.08002 * 119.50796 * 180.26976 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2726 0.0005 5 6 4.0515 2.5236 0.0000 6 6 5.5283 2.6416 0.0000 7 8 6.2177 1.6410 0.0000 8 7 6.1071 3.8587 -0.0011 9 6 7.5674 3.9755 -0.0017 10 1 8.0627 3.0933 0.4041 11 6 8.1504 4.4460 -1.3478 12 6 9.1299 5.3049 -0.5309 13 1 9.3058 6.2922 -0.9580 14 7 10.3698 4.6078 -0.1799 15 6 11.5359 4.9168 -0.8277 16 1 11.5418 5.6746 -1.5972 17 6 12.7118 4.2603 -0.4911 18 7 12.7047 3.3371 0.4469 19 14 14.3042 4.6872 -1.3695 20 1 14.6196 6.1220 -1.1529 21 1 15.4063 3.8507 -0.8306 22 1 14.1521 4.4279 -2.8237 23 6 8.0799 5.2979 0.5927 24 6 3.2394 3.6637 0.0048 25 6 1.8680 3.5116 -0.0011 26 7 1.3179 2.3127 -0.0006 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 4.0231 0.3683 0.0014 31 1 5.5568 4.6575 -0.0022 32 1 7.4512 5.0303 -1.9460 33 1 8.6351 3.6524 -1.9165 34 1 10.3645 3.9274 0.5115 35 1 13.5263 2.8781 0.6819 36 1 8.5079 5.1917 1.5896 37 1 7.3617 6.1149 0.5242 38 1 3.6805 4.6495 0.0090 39 1 1.2357 4.3872 -0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020339646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:41 Heat of formation + Delta-G solvation = -23.549822 kcal Electronic energy + Delta-G solvation = -22034.785436 eV Core-core repulsion = 18557.067935 eV Total energy + Delta-G solvation = -3477.717501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96502 -40.94787 -39.52246 -38.67514 -35.80822 -34.58057 -33.51530 -31.92342 -31.44576 -28.30416 -26.75926 -26.50431 -25.57151 -24.40516 -23.94165 -21.89275 -20.53881 -19.54060 -19.31143 -18.41377 -17.64320 -17.14709 -17.08444 -16.76600 -16.63888 -16.15656 -15.73980 -15.64937 -15.17210 -15.05706 -14.83557 -14.46787 -14.31788 -13.64046 -13.34718 -13.29472 -13.18731 -12.76360 -12.68329 -12.62515 -12.22229 -12.21475 -11.84208 -11.74954 -11.43916 -11.26582 -11.10663 -10.87791 -10.72995 -10.06406 -9.62576 -9.02533 -7.95184 -5.24830 -0.44314 0.05827 1.47560 1.51107 1.57060 1.73583 1.78070 2.23087 2.55965 2.73263 3.26024 3.36730 3.46238 3.63814 3.82802 3.87252 3.89528 3.93244 4.07398 4.30516 4.35353 4.42273 4.44153 4.60742 4.68883 4.75705 4.80803 4.84684 4.96844 5.01536 5.13887 5.21935 5.27282 5.30926 5.50431 5.65789 6.14341 6.27150 6.45166 6.69409 7.10416 7.31871 8.08844 8.29285 9.28155 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.039983 B = 0.002590 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.132149 B =10807.453166 C =11252.808141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.325 6.325 3 C 0.308 3.692 4 C -0.158 4.158 5 C -0.059 4.059 6 C 0.550 3.450 7 O -0.579 6.579 8 N -0.684 5.684 9 C 0.128 3.872 10 H 0.071 0.929 11 C -0.171 4.171 12 C 0.150 3.850 13 H 0.081 0.919 14 N -0.724 5.724 15 C -0.243 4.243 16 H 0.083 0.917 17 C -0.080 4.080 18 N -0.972 5.972 19 Si 0.976 3.024 20 H -0.273 1.273 21 H -0.299 1.299 22 H -0.279 1.279 23 C -0.135 4.135 24 C -0.164 4.164 25 C 0.145 3.855 26 N -0.533 5.533 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.421 0.579 32 H 0.110 0.890 33 H 0.033 0.967 34 H 0.371 0.629 35 H 0.250 0.750 36 H 0.062 0.938 37 H 0.132 0.868 38 H 0.183 0.817 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.530 4.506 -0.771 28.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.232 6.232 3 C 0.130 3.870 4 C -0.180 4.180 5 C -0.070 4.070 6 C 0.337 3.663 7 O -0.459 6.459 8 N -0.336 5.336 9 C 0.023 3.977 10 H 0.089 0.911 11 C -0.213 4.213 12 C 0.039 3.961 13 H 0.099 0.901 14 N -0.362 5.362 15 C -0.375 4.375 16 H 0.101 0.899 17 C -0.272 4.272 18 N -0.623 5.623 19 Si 0.805 3.195 20 H -0.198 1.198 21 H -0.226 1.226 22 H -0.205 1.205 23 C -0.174 4.174 24 C -0.184 4.184 25 C -0.011 4.011 26 N -0.258 5.258 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.151 0.849 31 H 0.260 0.740 32 H 0.128 0.872 33 H 0.052 0.948 34 H 0.203 0.797 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.150 0.850 38 H 0.200 0.800 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -28.682 3.545 -0.874 28.914 hybrid contribution 1.774 -0.458 -0.075 1.834 sum -26.908 3.088 -0.950 27.101 Atomic orbital electron populations 1.23116 0.75224 1.04790 1.02685 1.86249 1.24909 1.24337 1.87685 1.19674 0.88676 0.85524 0.93150 1.21112 0.92585 0.99220 1.05124 1.20057 0.92434 0.94449 1.00033 1.18601 0.87725 0.83874 0.76083 1.90810 1.65557 1.38353 1.51174 1.45703 1.07346 1.07688 1.72813 1.22382 0.78709 0.98474 0.98159 0.91067 1.24254 0.99813 1.00556 0.96676 1.21259 0.84645 0.95067 0.95107 0.90132 1.42412 1.04263 1.45190 1.44336 1.19679 0.87037 1.16412 1.14335 0.89907 1.25649 1.01555 0.99517 1.00485 1.69833 1.27590 1.29528 1.35327 0.85169 0.78921 0.77537 0.77879 1.19834 1.22554 1.20518 1.23739 0.98482 0.96368 0.98807 1.22566 0.94836 0.99267 1.01735 1.23174 0.92960 0.94037 0.90902 1.67295 1.41277 0.99381 1.17854 0.91930 0.91930 0.86235 0.84914 0.73958 0.87195 0.94775 0.79711 0.94088 0.91886 0.84980 0.80028 0.77161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 113.37 1.18 1.66 16 2 O -0.32 -7.07 10.47 -90.05 -0.94 -8.01 16 3 C 0.31 6.95 7.49 84.80 0.63 7.58 16 4 C -0.16 -4.02 9.61 22.75 0.22 -3.81 16 5 C -0.06 -1.32 5.91 -19.90 -0.12 -1.44 16 6 C 0.55 15.99 7.80 86.88 0.68 16.67 16 7 O -0.58 -23.47 16.04 -3.75 -0.06 -23.53 16 8 N -0.68 -15.81 5.32 -442.17 -2.35 -18.16 16 9 C 0.13 3.99 4.13 45.61 0.19 4.17 16 10 H 0.07 2.94 7.46 -2.38 -0.02 2.92 16 11 C -0.17 -5.61 7.70 31.21 0.24 -5.37 16 12 C 0.15 5.46 4.55 45.52 0.21 5.67 16 13 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 14 N -0.72 -36.37 5.31 -320.43 -1.70 -38.07 16 15 C -0.24 -13.42 9.97 84.04 0.84 -12.59 16 16 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 17 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 18 N -0.97 -60.93 13.06 21.65 0.28 -60.65 16 19 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 C -0.13 -3.69 7.57 31.12 0.24 -3.45 16 24 C -0.16 -2.06 9.61 22.63 0.22 -1.84 16 25 C 0.14 1.67 11.17 84.62 0.94 2.62 16 26 N -0.53 -9.65 9.18 -309.14 -2.84 -12.49 16 27 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 28 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 29 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.13 3.83 7.74 -2.91 -0.02 3.81 16 31 H 0.42 5.48 6.87 -92.71 -0.64 4.84 16 32 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.37 20.52 7.90 -92.71 -0.73 19.79 16 35 H 0.25 15.29 8.31 -92.70 -0.77 14.52 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.13 2.28 8.12 -2.39 -0.02 2.26 16 38 H 0.18 0.75 6.53 -2.91 -0.02 0.73 16 39 H 0.21 0.51 8.06 -2.91 -0.02 0.49 16 Total: -1.00 -79.42 337.34 0.06 -79.36 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -0.28 Total: 27.39 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 5.93 Total: 5.70 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -6.61 Total: -129.37 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.00 Total: -31.55 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -79.42 0.06 -79.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020339646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.808 kcal (2) G-P(sol) polarization free energy of solvation -79.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds