Wall clock time and date at job start Tue Mar 31 2020 06:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35498 * 116.99864 * 2 1 4 4 C 1.39170 * 119.52734 * 180.02562 * 3 2 1 5 5 C 1.37953 * 119.26157 * 179.72610 * 4 3 2 6 6 C 1.40278 * 118.35806 * 0.51484 * 5 4 3 7 7 C 1.47620 * 120.49527 * 179.75782 * 6 5 4 8 8 O 1.21582 * 120.00219 * 359.72258 * 7 6 5 9 9 N 1.34778 * 119.99847 * 179.72597 * 7 6 5 10 10 C 1.46500 * 119.99919 * 180.02562 * 9 7 6 11 11 H 1.09002 * 112.85132 * 25.33083 * 10 9 7 12 12 C 1.53781 * 113.61711 * 156.52821 * 10 9 7 13 13 C 1.53777 * 87.08336 * 140.06028 * 12 10 9 14 14 H 1.08996 * 113.61474 * 220.01758 * 13 12 10 15 15 N 1.46499 * 113.61160 * 89.20358 * 13 12 10 16 16 C 1.36930 * 120.00198 * 155.00125 * 15 13 12 17 17 H 1.08006 * 120.00088 * 359.97438 * 16 15 13 18 18 C 1.38820 * 120.00359 * 179.97438 * 16 15 13 19 19 N 1.31615 * 119.99664 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99967 * 179.97438 * 18 16 15 21 21 H 1.48489 * 109.47159 * 60.00558 * 20 18 16 22 22 H 1.48506 * 109.46531 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47175 * 299.99980 * 20 18 16 24 24 C 1.53775 * 87.07992 * 334.56762 * 13 12 10 25 25 C 1.39524 * 119.00611 * 359.48407 * 6 5 4 26 26 N 1.31666 * 120.62174 * 0.25216 * 25 6 5 27 27 H 1.09001 * 109.46573 * 299.99172 * 1 2 3 28 28 H 1.09001 * 109.47669 * 59.99331 * 1 2 3 29 29 H 1.09000 * 109.47343 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.36352 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.81666 * 180.27911 * 5 4 3 32 32 H 0.96998 * 120.00229 * 359.97438 * 9 7 6 33 33 H 1.08997 * 113.61673 * 254.61577 * 12 10 9 34 34 H 1.09009 * 113.61202 * 25.42807 * 12 10 9 35 35 H 0.97006 * 119.99863 * 334.99879 * 15 13 12 36 36 H 0.97001 * 120.00195 * 179.97438 * 19 18 16 37 37 H 1.08993 * 113.61636 * 270.87622 * 24 13 12 38 38 H 1.09008 * 113.61006 * 139.97865 * 24 13 12 39 39 H 1.07993 * 119.68450 * 180.26990 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2687 -0.0005 5 6 4.0551 2.5008 -0.0063 6 6 3.2523 3.6512 -0.0003 7 6 3.8668 4.9934 -0.0007 8 8 5.0772 5.1079 -0.0011 9 7 3.0860 6.0920 -0.0005 10 6 3.6957 7.4240 -0.0014 11 1 4.6971 7.4309 -0.4320 12 6 2.7766 8.5219 -0.5623 13 6 3.3096 9.4308 0.5577 14 1 2.5437 10.0600 1.0111 15 7 4.5124 10.1789 0.1839 16 6 4.8096 11.3573 0.8148 17 1 4.1569 11.7355 1.5878 18 6 5.9496 12.0659 0.4609 19 7 6.7447 11.6053 -0.4814 20 14 6.3544 13.6739 1.3212 21 1 6.5219 13.4284 2.7760 22 1 7.6140 14.2297 0.7643 23 1 5.2492 14.6421 1.1065 24 6 3.6022 8.1473 1.3524 25 6 1.8645 3.5077 0.0002 26 7 1.3139 2.3117 0.0001 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 4.0210 0.3619 -0.0014 31 1 5.1323 2.5777 -0.0114 32 1 2.1203 6.0006 -0.0005 33 1 3.0532 8.8540 -1.5630 34 1 1.7150 8.2913 -0.4713 35 1 5.0985 9.8394 -0.5106 36 1 7.5411 12.1006 -0.7289 37 1 2.7666 7.8149 1.9683 38 1 4.5457 8.1769 1.8977 39 1 1.2361 4.3860 0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020371177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:44 Heat of formation + Delta-G solvation = 1.386061 kcal Electronic energy + Delta-G solvation = -22020.506273 eV Core-core repulsion = 18543.870073 eV Total energy + Delta-G solvation = -3476.636200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13860 -39.78719 -38.40024 -37.58089 -34.15839 -32.90639 -32.78661 -31.11559 -29.63566 -27.77160 -25.12456 -25.02243 -24.15700 -23.53475 -22.49511 -20.75791 -19.08692 -18.76228 -17.70810 -17.45316 -17.22464 -16.44351 -15.84597 -15.21414 -14.96508 -14.82004 -14.70023 -14.37742 -13.96890 -13.59968 -13.55132 -13.17219 -13.00037 -12.70134 -12.26806 -12.13221 -11.99812 -11.65941 -11.56848 -10.86555 -10.81053 -10.34555 -10.32379 -10.28073 -10.17711 -9.89574 -9.72604 -9.61210 -8.99023 -8.91036 -8.69352 -7.01061 -5.79064 -3.09241 0.43064 0.84071 2.64073 2.77035 3.20816 3.43809 3.48079 3.49371 3.59266 3.79594 4.44705 4.53843 4.56249 4.70679 4.77396 4.91914 4.92114 5.04819 5.21297 5.22452 5.23169 5.37948 5.44834 5.47718 5.77097 5.86912 5.95118 5.99627 6.07550 6.18939 6.35322 6.59756 6.71239 6.74972 6.77012 7.01741 7.34043 7.58473 7.68924 8.26698 8.39063 9.49749 10.05908 10.39853 11.43003 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.045860 B = 0.002540 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.410860 B =11020.310792 C =11385.450214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.305 6.305 3 C 0.337 3.663 4 C -0.196 4.196 5 C 0.016 3.984 6 C -0.220 4.220 7 C 0.562 3.438 8 O -0.533 6.533 9 N -0.712 5.712 10 C 0.125 3.875 11 H 0.115 0.885 12 C -0.164 4.164 13 C 0.172 3.828 14 H 0.069 0.931 15 N -0.705 5.705 16 C -0.246 4.246 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.184 4.184 25 C 0.177 3.823 26 N -0.544 5.544 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.394 0.606 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.386 0.614 36 H 0.257 0.743 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.914 -22.222 0.184 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.211 6.211 3 C 0.158 3.842 4 C -0.216 4.216 5 C -0.010 4.010 6 C -0.226 4.226 7 C 0.348 3.652 8 O -0.410 6.410 9 N -0.362 5.362 10 C 0.022 3.978 11 H 0.133 0.867 12 C -0.204 4.204 13 C 0.059 3.941 14 H 0.087 0.913 15 N -0.344 5.344 16 C -0.377 4.377 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.226 4.226 25 C 0.019 3.981 26 N -0.267 5.267 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.167 0.833 31 H 0.174 0.826 32 H 0.229 0.771 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.795 -22.297 0.259 26.221 hybrid contribution 0.566 0.777 0.246 0.992 sum -13.229 -21.521 0.505 25.267 Atomic orbital electron populations 1.22925 0.76808 1.03191 1.02769 1.86220 1.23309 1.24493 1.87080 1.20090 0.89531 0.84715 0.89834 1.21067 0.91800 0.99688 1.09084 1.21582 1.01524 0.89660 0.88198 1.20951 0.94978 0.95223 1.11408 1.17918 0.86866 0.83740 0.76692 1.90822 1.13725 1.86841 1.49599 1.46046 1.09441 1.06260 1.74463 1.22702 0.98496 0.77953 0.98676 0.86725 1.23907 0.98503 0.96782 1.01225 1.20897 0.90522 0.90070 0.92638 0.91331 1.42190 1.24008 1.23621 1.44540 1.19221 1.05814 0.97514 1.15185 0.90974 1.24789 0.97615 0.99284 0.99069 1.69654 1.15473 1.39973 1.32652 0.86232 0.77383 0.83393 0.78937 1.21184 1.21671 1.21195 1.24327 1.01980 0.99828 0.96501 1.22611 0.91622 0.93894 0.89985 1.67299 1.40547 0.98632 1.20254 0.92019 0.92024 0.88437 0.83329 0.82625 0.77127 0.90755 0.90273 0.77956 0.93304 0.91221 0.90954 0.81958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.37 101.05 1.05 1.29 16 2 O -0.30 -2.80 10.46 -18.19 -0.19 -2.99 16 3 C 0.34 3.42 7.49 -16.96 -0.13 3.29 16 4 C -0.20 -1.81 10.02 -39.34 -0.39 -2.21 16 5 C 0.02 0.17 9.70 -38.92 -0.38 -0.21 16 6 C -0.22 -2.50 5.89 -104.82 -0.62 -3.12 16 7 C 0.56 8.08 7.77 -12.43 -0.10 7.99 16 8 O -0.53 -9.97 16.03 5.29 0.08 -9.88 16 9 N -0.71 -9.09 5.32 -54.03 -0.29 -9.38 16 10 C 0.13 2.02 4.10 -67.12 -0.27 1.74 16 11 H 0.11 2.24 7.50 -51.93 -0.39 1.85 16 12 C -0.16 -2.50 7.57 -25.92 -0.20 -2.70 16 13 C 0.17 3.29 4.56 -67.12 -0.31 2.98 16 14 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 15 N -0.71 -17.48 5.31 -52.64 -0.28 -17.76 16 16 C -0.25 -6.78 9.97 -15.06 -0.15 -6.93 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 20 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C -0.18 -3.17 7.68 -25.92 -0.20 -3.37 16 25 C 0.18 1.69 10.71 -17.14 -0.18 1.51 16 26 N -0.54 -5.58 9.18 -12.97 -0.12 -5.70 16 27 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 28 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.16 1.56 7.73 -52.49 -0.41 1.16 16 32 H 0.39 3.61 6.76 -40.82 -0.28 3.34 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.08 0.94 8.11 -51.92 -0.42 0.52 16 35 H 0.39 10.25 7.90 -40.82 -0.32 9.93 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 39 H 0.16 1.09 6.41 -52.49 -0.34 0.75 16 LS Contribution 337.05 15.07 5.08 5.08 Total: -1.00 -33.56 337.05 -7.05 -40.62 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.07 Total: 10.30 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.97 Total: -0.15 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.04 Total: -60.25 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.11 Total: -12.87 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.56 -7.05 -40.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020371177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.004 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds