Wall clock time and date at job start Tue Mar 31 2020 06:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35498 * 116.99864 * 2 1 4 4 C 1.39170 * 119.52734 * 180.02562 * 3 2 1 5 5 C 1.37953 * 119.26157 * 179.72610 * 4 3 2 6 6 C 1.40278 * 118.35806 * 0.51484 * 5 4 3 7 7 C 1.47620 * 120.49527 * 179.75782 * 6 5 4 8 8 O 1.21582 * 120.00219 * 359.72258 * 7 6 5 9 9 N 1.34778 * 119.99847 * 179.72597 * 7 6 5 10 10 C 1.46500 * 119.99919 * 180.02562 * 9 7 6 11 11 H 1.09002 * 112.85132 * 25.33083 * 10 9 7 12 12 C 1.53781 * 113.61711 * 156.52821 * 10 9 7 13 13 C 1.53777 * 87.08336 * 140.06028 * 12 10 9 14 14 H 1.08996 * 113.61474 * 220.01758 * 13 12 10 15 15 N 1.46499 * 113.61160 * 89.20358 * 13 12 10 16 16 C 1.36930 * 120.00198 * 155.00125 * 15 13 12 17 17 H 1.08006 * 120.00088 * 359.97438 * 16 15 13 18 18 C 1.38820 * 120.00359 * 179.97438 * 16 15 13 19 19 N 1.31615 * 119.99664 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99967 * 179.97438 * 18 16 15 21 21 H 1.48489 * 109.47159 * 60.00558 * 20 18 16 22 22 H 1.48506 * 109.46531 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47175 * 299.99980 * 20 18 16 24 24 C 1.53775 * 87.07992 * 334.56762 * 13 12 10 25 25 C 1.39524 * 119.00611 * 359.48407 * 6 5 4 26 26 N 1.31666 * 120.62174 * 0.25216 * 25 6 5 27 27 H 1.09001 * 109.46573 * 299.99172 * 1 2 3 28 28 H 1.09001 * 109.47669 * 59.99331 * 1 2 3 29 29 H 1.09000 * 109.47343 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.36352 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.81666 * 180.27911 * 5 4 3 32 32 H 0.96998 * 120.00229 * 359.97438 * 9 7 6 33 33 H 1.08997 * 113.61673 * 254.61577 * 12 10 9 34 34 H 1.09009 * 113.61202 * 25.42807 * 12 10 9 35 35 H 0.97006 * 119.99863 * 334.99879 * 15 13 12 36 36 H 0.97001 * 120.00195 * 179.97438 * 19 18 16 37 37 H 1.08993 * 113.61636 * 270.87622 * 24 13 12 38 38 H 1.09008 * 113.61006 * 139.97865 * 24 13 12 39 39 H 1.07993 * 119.68450 * 180.26990 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2687 -0.0005 5 6 4.0551 2.5008 -0.0063 6 6 3.2523 3.6512 -0.0003 7 6 3.8668 4.9934 -0.0007 8 8 5.0772 5.1079 -0.0011 9 7 3.0860 6.0920 -0.0005 10 6 3.6957 7.4240 -0.0014 11 1 4.6971 7.4309 -0.4320 12 6 2.7766 8.5219 -0.5623 13 6 3.3096 9.4308 0.5577 14 1 2.5437 10.0600 1.0111 15 7 4.5124 10.1789 0.1839 16 6 4.8096 11.3573 0.8148 17 1 4.1569 11.7355 1.5878 18 6 5.9496 12.0659 0.4609 19 7 6.7447 11.6053 -0.4814 20 14 6.3544 13.6739 1.3212 21 1 6.5219 13.4284 2.7760 22 1 7.6140 14.2297 0.7643 23 1 5.2492 14.6421 1.1065 24 6 3.6022 8.1473 1.3524 25 6 1.8645 3.5077 0.0002 26 7 1.3139 2.3117 0.0001 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 4.0210 0.3619 -0.0014 31 1 5.1323 2.5777 -0.0114 32 1 2.1203 6.0006 -0.0005 33 1 3.0532 8.8540 -1.5630 34 1 1.7150 8.2913 -0.4713 35 1 5.0985 9.8394 -0.5106 36 1 7.5411 12.1006 -0.7289 37 1 2.7666 7.8149 1.9683 38 1 4.5457 8.1769 1.8977 39 1 1.2361 4.3860 0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020371177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:43 Heat of formation + Delta-G solvation = -24.760709 kcal Electronic energy + Delta-G solvation = -22021.640082 eV Core-core repulsion = 18543.870073 eV Total energy + Delta-G solvation = -3477.770009 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96185 -40.91730 -39.53239 -38.58225 -35.77394 -34.42572 -33.65555 -32.20754 -31.32848 -28.37958 -26.50977 -26.40808 -25.42102 -24.65919 -23.73076 -21.87388 -20.39294 -19.55825 -19.35899 -18.66978 -18.25192 -17.14103 -17.10094 -16.62789 -16.13017 -16.08091 -15.73626 -15.49963 -15.15221 -15.05299 -14.46599 -14.33696 -14.23652 -13.87328 -13.60343 -13.30687 -13.25899 -12.77249 -12.75649 -12.60654 -12.21914 -12.20451 -11.81516 -11.72079 -11.40294 -11.18458 -11.10673 -10.86135 -10.69350 -10.07665 -9.63473 -9.01688 -7.94538 -5.24117 -0.40058 0.08821 1.47956 1.51510 1.57420 1.76347 1.98369 2.12897 2.56437 2.72641 3.10593 3.37255 3.60127 3.66793 3.76486 3.84705 3.91910 3.95758 4.02997 4.32545 4.36259 4.44364 4.45317 4.55616 4.68148 4.79377 4.81409 4.85562 4.99944 5.05571 5.17652 5.21194 5.26612 5.32535 5.51609 5.68696 6.06999 6.27820 6.52445 6.59947 7.20575 7.32479 8.09408 8.30208 9.28752 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.045860 B = 0.002540 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.410860 B =11020.310792 C =11385.450214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.311 6.311 3 C 0.332 3.668 4 C -0.193 4.193 5 C 0.009 3.991 6 C -0.235 4.235 7 C 0.562 3.438 8 O -0.586 6.586 9 N -0.694 5.694 10 C 0.131 3.869 11 H 0.072 0.928 12 C -0.137 4.137 13 C 0.150 3.850 14 H 0.079 0.921 15 N -0.724 5.724 16 C -0.243 4.243 17 H 0.082 0.918 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.976 3.024 21 H -0.279 1.279 22 H -0.299 1.299 23 H -0.273 1.273 24 C -0.171 4.171 25 C 0.189 3.811 26 N -0.550 5.550 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.124 0.876 30 H 0.170 0.830 31 H 0.152 0.848 32 H 0.416 0.584 33 H 0.062 0.938 34 H 0.129 0.871 35 H 0.372 0.628 36 H 0.251 0.749 37 H 0.107 0.893 38 H 0.034 0.966 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.017 -23.315 0.878 28.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.217 6.217 3 C 0.154 3.846 4 C -0.214 4.214 5 C -0.016 4.016 6 C -0.241 4.241 7 C 0.350 3.650 8 O -0.467 6.467 9 N -0.345 5.345 10 C 0.026 3.974 11 H 0.090 0.910 12 C -0.177 4.177 13 C 0.039 3.961 14 H 0.097 0.903 15 N -0.361 5.361 16 C -0.375 4.375 17 H 0.100 0.900 18 C -0.272 4.272 19 N -0.622 5.622 20 Si 0.805 3.195 21 H -0.205 1.205 22 H -0.225 1.225 23 H -0.199 1.199 24 C -0.213 4.213 25 C 0.031 3.969 26 N -0.274 5.274 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.142 0.858 30 H 0.187 0.813 31 H 0.170 0.830 32 H 0.255 0.745 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.203 0.797 36 H 0.059 0.941 37 H 0.125 0.875 38 H 0.053 0.947 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -17.010 -23.430 0.981 28.970 hybrid contribution 1.405 0.956 0.059 1.701 sum -15.605 -22.474 1.040 27.380 Atomic orbital electron populations 1.23167 0.75260 1.05023 1.02724 1.86223 1.24869 1.23996 1.86660 1.20351 0.89969 0.85122 0.89164 1.21231 0.91872 0.99893 1.08377 1.21661 1.01564 0.90137 0.88251 1.20730 0.95955 0.93520 1.13882 1.18362 0.86256 0.84977 0.75409 1.90802 1.16157 1.87633 1.52143 1.45749 1.10461 1.04614 1.73706 1.22256 0.97304 0.79968 0.97871 0.90992 1.23751 1.00797 0.94106 0.98999 1.21246 0.88970 0.90738 0.95111 0.90257 1.42397 1.25771 1.23666 1.44276 1.19681 1.05370 0.97976 1.14480 0.89979 1.25645 0.98091 1.03000 1.00437 1.69830 1.16044 1.41498 1.34839 0.85167 0.76881 0.79584 0.77856 1.20501 1.22504 1.19915 1.24195 1.01445 0.98867 0.96810 1.22990 0.90939 0.94739 0.88258 1.67392 1.40533 0.98781 1.20695 0.92028 0.92025 0.85801 0.81290 0.83020 0.74469 0.91916 0.85301 0.79669 0.94078 0.87470 0.94739 0.78927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.37 113.37 1.18 1.51 16 2 O -0.31 -5.01 10.46 -87.99 -0.92 -5.94 16 3 C 0.33 6.05 7.49 84.83 0.64 6.68 16 4 C -0.19 -3.29 10.02 22.43 0.22 -3.06 16 5 C 0.01 0.19 9.70 22.70 0.22 0.41 16 6 C -0.24 -5.06 5.89 -19.99 -0.12 -5.18 16 7 C 0.56 15.95 7.77 86.72 0.67 16.62 16 8 O -0.59 -22.83 16.03 -3.98 -0.06 -22.89 16 9 N -0.69 -16.42 5.32 -443.12 -2.36 -18.78 16 10 C 0.13 4.14 4.10 45.52 0.19 4.33 16 11 H 0.07 2.96 7.50 -2.39 -0.02 2.94 16 12 C -0.14 -3.87 7.57 31.12 0.24 -3.63 16 13 C 0.15 5.57 4.56 45.51 0.21 5.77 16 14 H 0.08 2.77 8.10 -2.39 -0.02 2.75 16 15 N -0.72 -36.54 5.31 -320.46 -1.70 -38.24 16 16 C -0.24 -13.50 9.97 84.04 0.84 -12.67 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 18 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 19 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 20 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 24 C -0.17 -5.72 7.68 31.12 0.24 -5.48 16 25 C 0.19 3.10 10.71 85.03 0.91 4.01 16 26 N -0.55 -9.87 9.18 -307.82 -2.82 -12.70 16 27 H 0.06 0.63 8.10 -2.39 -0.02 0.61 16 28 H 0.06 0.63 8.10 -2.39 -0.02 0.61 16 29 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.15 3.14 7.73 -2.91 -0.02 3.12 16 32 H 0.42 6.00 6.76 -92.71 -0.63 5.38 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.13 2.39 8.11 -2.38 -0.02 2.37 16 35 H 0.37 20.59 7.90 -92.70 -0.73 19.86 16 36 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.19 1.77 6.41 -2.91 -0.02 1.75 16 Total: -1.00 -76.13 337.05 0.07 -76.06 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.27 Total: 29.34 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.90 Total: 5.15 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -6.60 Total: -130.25 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.98 Total: -28.83 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -76.13 0.07 -76.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020371177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.304 kcal (2) G-P(sol) polarization free energy of solvation -76.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds