Wall clock time and date at job start Tue Mar 31 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47392 * 2 1 4 4 C 1.35491 * 117.00265 * 179.97438 * 3 2 1 5 5 C 1.39162 * 119.52705 * 180.02562 * 4 3 2 6 6 C 1.37963 * 119.26329 * 180.02562 * 5 4 3 7 7 C 1.40279 * 118.35894 * 359.97438 * 6 5 4 8 8 C 1.47616 * 120.49769 * 180.02562 * 7 6 5 9 9 O 1.21577 * 120.00428 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99707 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99743 * 180.02562 * 10 8 7 12 12 C 1.53943 * 113.74146 * 253.74244 * 11 10 8 13 13 N 1.47810 * 86.03666 * 222.08406 * 12 11 10 14 14 C 1.36938 * 134.45604 * 204.64118 * 13 12 11 15 15 H 1.08004 * 120.00101 * 173.35096 * 14 13 12 16 16 C 1.38805 * 120.00340 * 353.35143 * 14 13 12 17 17 N 1.31619 * 119.99751 * 5.06208 * 16 14 13 18 18 Si 1.86797 * 120.00198 * 185.06184 * 16 14 13 19 19 H 1.48500 * 109.47134 * 94.99009 * 18 16 14 20 20 H 1.48505 * 109.47312 * 214.98736 * 18 16 14 21 21 H 1.48504 * 109.47377 * 334.98793 * 18 16 14 22 22 C 1.47579 * 91.04997 * 24.55295 * 13 12 11 23 23 C 1.39524 * 119.00034 * 0.02562 * 7 6 5 24 24 N 1.31658 * 120.63197 * 0.02562 * 23 7 6 25 25 H 1.09008 * 109.47265 * 59.99752 * 1 2 3 26 26 H 1.09002 * 109.47403 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47152 * 299.99938 * 1 2 3 28 28 H 1.09009 * 109.46998 * 240.00334 * 2 1 3 29 29 H 1.08997 * 109.46912 * 120.00572 * 2 1 3 30 30 H 1.07998 * 120.37194 * 0.02562 * 5 4 3 31 31 H 1.08005 * 120.81716 * 179.97438 * 6 5 4 32 32 H 0.96998 * 120.00006 * 0.02562 * 10 8 7 33 33 H 1.09001 * 112.94710 * 25.33549 * 11 10 8 34 34 H 1.08996 * 113.77229 * 336.34894 * 12 11 10 35 35 H 1.09009 * 113.76931 * 107.75084 * 12 11 10 36 36 H 0.97007 * 119.99928 * 179.97438 * 17 16 14 37 37 H 1.09009 * 113.76931 * 221.15151 * 22 13 12 38 38 H 1.08995 * 113.77331 * 89.75808 * 22 13 12 39 39 H 1.08003 * 119.68157 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3496 1.5248 0.0005 5 6 3.8709 2.8151 0.0011 6 6 5.2394 2.9895 0.0011 7 6 6.0565 1.8493 0.0011 8 6 7.5267 1.9812 0.0017 9 8 8.0382 3.0841 0.0017 10 7 8.3022 0.8787 0.0022 11 6 9.7613 1.0096 0.0033 12 6 10.4149 0.6722 -1.3490 13 7 11.4425 -0.0381 -0.5588 14 6 12.7504 -0.3815 -0.7745 15 1 13.3322 -0.8197 0.0230 16 6 13.3286 -0.1665 -2.0179 17 7 12.6524 0.4576 -2.9590 18 14 15.0663 -0.7629 -2.3557 19 1 15.0142 -2.0975 -3.0047 20 1 15.7535 0.1984 -3.2552 21 1 15.8127 -0.8636 -1.0759 22 6 10.4940 -0.2263 0.5560 23 6 5.4586 0.5886 0.0005 24 7 4.1475 0.4680 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.2115 3.6704 0.0015 31 1 5.6710 3.9796 0.0011 32 1 7.8942 -0.0012 0.0018 33 1 10.1032 1.9511 0.4332 34 1 9.8121 0.0160 -1.9768 35 1 10.7943 1.5434 -1.8832 36 1 13.0565 0.6082 -3.8279 37 1 10.9363 -0.0713 1.5402 38 1 9.9145 -1.1471 0.4891 39 1 6.0771 -0.2967 0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030397713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:52 Heat of formation + Delta-G solvation = 20.333620 kcal Electronic energy + Delta-G solvation = -22062.293436 eV Core-core repulsion = 18586.478863 eV Total energy + Delta-G solvation = -3475.814572 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02151 -39.56402 -38.19690 -37.32663 -33.73601 -32.74206 -32.43429 -31.85049 -30.25504 -27.44187 -24.87078 -24.76870 -24.46648 -23.08180 -22.35157 -20.60569 -19.72353 -18.85455 -17.53066 -17.18451 -16.76798 -16.63181 -15.65601 -15.09147 -15.04192 -14.67198 -14.30320 -14.27305 -14.01662 -13.81715 -13.42330 -13.02975 -12.82814 -12.74069 -12.54917 -11.91893 -11.91581 -11.49329 -11.48280 -11.08517 -10.90118 -10.81727 -10.49661 -10.21782 -10.19664 -10.01411 -9.59395 -9.53888 -8.83999 -8.82673 -8.46583 -6.93787 -5.81157 -3.14442 0.56352 0.96045 2.66188 2.91442 3.34259 3.39102 3.44646 3.45855 3.73227 3.91281 4.43422 4.58215 4.64474 4.65129 4.68632 4.82343 4.91560 5.04295 5.13271 5.29793 5.35208 5.43494 5.45940 5.53617 5.57128 5.68398 5.87693 6.00763 6.08462 6.18247 6.37726 6.52565 6.69597 6.89611 7.21060 7.31406 7.46984 7.52864 7.78778 7.93291 8.43471 8.99982 9.66335 10.53146 11.36159 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.034818 B = 0.002652 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.985989 B =10554.682660 C =10888.668227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.305 6.305 4 C 0.339 3.661 5 C -0.198 4.198 6 C 0.016 3.984 7 C -0.218 4.218 8 C 0.564 3.436 9 O -0.539 6.539 10 N -0.710 5.710 11 C 0.091 3.909 12 C 0.157 3.843 13 N -0.607 5.607 14 C -0.227 4.227 15 H 0.083 0.917 16 C -0.005 4.005 17 N -0.917 5.917 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.112 3.888 23 C 0.177 3.823 24 N -0.544 5.544 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.148 0.852 31 H 0.155 0.845 32 H 0.395 0.605 33 H 0.112 0.888 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.255 0.745 37 H 0.050 0.950 38 H 0.036 0.964 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.122 0.131 6.874 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.212 6.212 4 C 0.160 3.840 5 C -0.218 4.218 6 C -0.010 4.010 7 C -0.224 4.224 8 C 0.349 3.651 9 O -0.417 6.417 10 N -0.360 5.360 11 C -0.013 4.013 12 C 0.030 3.970 13 N -0.334 5.334 14 C -0.354 4.354 15 H 0.100 0.900 16 C -0.203 4.203 17 N -0.563 5.563 18 Si 0.743 3.257 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.205 1.205 22 C -0.015 4.015 23 C 0.020 3.980 24 N -0.268 5.268 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.165 0.835 31 H 0.173 0.827 32 H 0.229 0.771 33 H 0.130 0.870 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -23.037 0.254 6.684 23.988 hybrid contribution 1.092 -0.397 -0.387 1.225 sum -21.944 -0.143 6.298 22.831 Atomic orbital electron populations 1.21830 0.92933 1.03005 1.03327 1.22665 0.94796 0.80797 1.02845 1.86202 1.16841 1.31062 1.87052 1.20033 0.84020 0.90063 0.89882 1.21046 0.95605 0.95793 1.09385 1.21562 0.91416 0.99675 0.88338 1.20968 0.95189 0.95055 1.11215 1.17876 0.85494 0.84993 0.76700 1.90784 1.74888 1.25773 1.50216 1.46072 1.07979 1.08016 1.73931 1.23987 0.75739 1.00407 1.01209 1.22663 0.87025 0.95886 0.91378 1.45710 1.06750 1.65777 1.15155 1.18983 0.84297 1.35870 0.96270 0.89973 1.24862 0.98750 1.00831 0.95822 1.69849 1.37066 1.44825 1.04522 0.86091 0.83592 0.78134 0.77894 1.21565 1.21625 1.20455 1.22877 0.90731 0.94176 0.93676 1.22653 0.89171 0.96452 0.89760 1.67326 1.06325 1.32839 1.20277 0.91612 0.90194 0.91639 0.91326 0.91372 0.83473 0.82700 0.77062 0.86965 0.95106 0.90832 0.93486 0.93159 0.94669 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 37.16 0.38 -0.47 16 2 C 0.06 0.51 6.02 37.16 0.22 0.73 16 3 O -0.30 -3.12 10.10 -18.16 -0.18 -3.30 16 4 C 0.34 3.78 7.49 -16.96 -0.13 3.65 16 5 C -0.20 -2.00 10.02 -39.34 -0.39 -2.39 16 6 C 0.02 0.18 9.70 -38.92 -0.38 -0.20 16 7 C -0.22 -2.74 5.89 -104.82 -0.62 -3.36 16 8 C 0.56 8.83 7.77 -12.43 -0.10 8.74 16 9 O -0.54 -10.45 16.04 5.30 0.08 -10.37 16 10 N -0.71 -10.67 5.33 -56.37 -0.30 -10.97 16 11 C 0.09 1.74 4.40 -70.15 -0.31 1.43 16 12 C 0.16 3.72 7.24 -2.84 -0.02 3.70 16 13 N -0.61 -15.47 3.70 -177.89 -0.66 -16.13 16 14 C -0.23 -6.34 10.70 -15.06 -0.16 -6.50 16 15 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 16 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 17 N -0.92 -27.41 11.51 55.49 0.64 -26.77 16 18 Si 0.91 22.09 29.56 -169.99 -5.02 17.07 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.11 2.19 8.69 -2.97 -0.03 2.17 16 23 C 0.18 1.95 10.71 -17.15 -0.18 1.77 16 24 N -0.54 -6.25 9.18 -12.97 -0.12 -6.37 16 25 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.56 8.10 -51.92 -0.42 0.14 16 29 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.16 1.65 7.73 -52.48 -0.41 1.24 16 32 H 0.39 4.69 6.76 -40.82 -0.28 4.41 16 33 H 0.11 2.32 7.51 -51.93 -0.39 1.93 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.98 7.37 -51.92 -0.38 1.60 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 38 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 39 H 0.16 1.39 6.41 -52.48 -0.34 1.06 16 LS Contribution 336.14 15.07 5.07 5.07 Total: -1.00 -33.86 336.14 -7.43 -41.29 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.14 Total: 1.47 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -1.80 Total: 9.02 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.44 Total: -60.24 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.10 Total: -13.67 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.86 -7.43 -41.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030397713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.624 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds