Wall clock time and date at job start Tue Mar 31 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47392 * 2 1 4 4 C 1.35491 * 117.00265 * 179.97438 * 3 2 1 5 5 C 1.39162 * 119.52705 * 180.02562 * 4 3 2 6 6 C 1.37963 * 119.26329 * 180.02562 * 5 4 3 7 7 C 1.40279 * 118.35894 * 359.97438 * 6 5 4 8 8 C 1.47616 * 120.49769 * 180.02562 * 7 6 5 9 9 O 1.21577 * 120.00428 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99707 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99743 * 180.02562 * 10 8 7 12 12 C 1.53943 * 113.74146 * 253.74244 * 11 10 8 13 13 N 1.47810 * 86.03666 * 222.08406 * 12 11 10 14 14 C 1.36938 * 134.45604 * 204.64118 * 13 12 11 15 15 H 1.08004 * 120.00101 * 173.35096 * 14 13 12 16 16 C 1.38805 * 120.00340 * 353.35143 * 14 13 12 17 17 N 1.31619 * 119.99751 * 5.06208 * 16 14 13 18 18 Si 1.86797 * 120.00198 * 185.06184 * 16 14 13 19 19 H 1.48500 * 109.47134 * 94.99009 * 18 16 14 20 20 H 1.48505 * 109.47312 * 214.98736 * 18 16 14 21 21 H 1.48504 * 109.47377 * 334.98793 * 18 16 14 22 22 C 1.47579 * 91.04997 * 24.55295 * 13 12 11 23 23 C 1.39524 * 119.00034 * 0.02562 * 7 6 5 24 24 N 1.31658 * 120.63197 * 0.02562 * 23 7 6 25 25 H 1.09008 * 109.47265 * 59.99752 * 1 2 3 26 26 H 1.09002 * 109.47403 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47152 * 299.99938 * 1 2 3 28 28 H 1.09009 * 109.46998 * 240.00334 * 2 1 3 29 29 H 1.08997 * 109.46912 * 120.00572 * 2 1 3 30 30 H 1.07998 * 120.37194 * 0.02562 * 5 4 3 31 31 H 1.08005 * 120.81716 * 179.97438 * 6 5 4 32 32 H 0.96998 * 120.00006 * 0.02562 * 10 8 7 33 33 H 1.09001 * 112.94710 * 25.33549 * 11 10 8 34 34 H 1.08996 * 113.77229 * 336.34894 * 12 11 10 35 35 H 1.09009 * 113.76931 * 107.75084 * 12 11 10 36 36 H 0.97007 * 119.99928 * 179.97438 * 17 16 14 37 37 H 1.09009 * 113.76931 * 221.15151 * 22 13 12 38 38 H 1.08995 * 113.77331 * 89.75808 * 22 13 12 39 39 H 1.08003 * 119.68157 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3496 1.5248 0.0005 5 6 3.8709 2.8151 0.0011 6 6 5.2394 2.9895 0.0011 7 6 6.0565 1.8493 0.0011 8 6 7.5267 1.9812 0.0017 9 8 8.0382 3.0841 0.0017 10 7 8.3022 0.8787 0.0022 11 6 9.7613 1.0096 0.0033 12 6 10.4149 0.6722 -1.3490 13 7 11.4425 -0.0381 -0.5588 14 6 12.7504 -0.3815 -0.7745 15 1 13.3322 -0.8197 0.0230 16 6 13.3286 -0.1665 -2.0179 17 7 12.6524 0.4576 -2.9590 18 14 15.0663 -0.7629 -2.3557 19 1 15.0142 -2.0975 -3.0047 20 1 15.7535 0.1984 -3.2552 21 1 15.8127 -0.8636 -1.0759 22 6 10.4940 -0.2263 0.5560 23 6 5.4586 0.5886 0.0005 24 7 4.1475 0.4680 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.2115 3.6704 0.0015 31 1 5.6710 3.9796 0.0011 32 1 7.8942 -0.0012 0.0018 33 1 10.1032 1.9511 0.4332 34 1 9.8121 0.0160 -1.9768 35 1 10.7943 1.5434 -1.8832 36 1 13.0565 0.6082 -3.8279 37 1 10.9363 -0.0713 1.5402 38 1 9.9145 -1.1471 0.4891 39 1 6.0771 -0.2967 0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030397713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:51 Heat of formation + Delta-G solvation = -4.852001 kcal Electronic energy + Delta-G solvation = -22063.385566 eV Core-core repulsion = 18586.478863 eV Total energy + Delta-G solvation = -3476.906703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.94099 -40.82900 -39.41860 -38.62786 -35.26279 -33.91643 -33.62980 -32.95982 -31.19601 -29.31263 -26.62226 -25.94100 -25.30121 -24.54305 -23.18270 -21.86013 -21.38405 -19.66756 -18.80922 -18.68204 -18.12767 -17.35888 -17.04844 -16.94163 -16.06508 -15.97361 -15.73755 -15.34923 -15.02694 -14.87637 -14.55351 -14.39062 -13.90047 -13.62919 -13.36616 -13.31596 -13.25827 -13.19254 -12.82477 -12.63691 -12.49141 -12.30319 -11.95530 -11.72520 -11.52568 -11.27098 -11.07691 -10.89245 -10.67134 -10.05815 -9.61025 -8.96526 -7.93667 -5.28046 -0.37308 0.11718 1.46120 1.48174 1.57436 1.78775 1.91643 2.08272 2.49656 2.75095 3.10155 3.24455 3.39435 3.64799 3.78669 3.84909 3.95954 3.99724 4.10703 4.21478 4.33139 4.47592 4.50623 4.56336 4.69122 4.76912 4.87997 4.91951 4.97232 5.03937 5.14601 5.21887 5.22588 5.29822 5.48614 5.68025 5.88729 6.11481 6.53226 6.62238 6.87781 7.20146 7.57727 8.51055 9.23958 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.034818 B = 0.002652 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.985989 B =10554.682660 C =10888.668227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.309 6.309 4 C 0.334 3.666 5 C -0.192 4.192 6 C 0.013 3.987 7 C -0.233 4.233 8 C 0.567 3.433 9 O -0.581 6.581 10 N -0.697 5.697 11 C 0.121 3.879 12 C 0.154 3.846 13 N -0.640 5.640 14 C -0.234 4.234 15 H 0.091 0.909 16 C -0.070 4.070 17 N -0.955 5.955 18 Si 0.982 3.018 19 H -0.286 1.286 20 H -0.297 1.297 21 H -0.263 1.263 22 C 0.122 3.878 23 C 0.186 3.814 24 N -0.552 5.552 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.171 0.829 31 H 0.157 0.843 32 H 0.414 0.586 33 H 0.096 0.904 34 H 0.028 0.972 35 H 0.029 0.971 36 H 0.249 0.751 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.658 -1.185 8.151 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.216 6.216 4 C 0.155 3.845 5 C -0.213 4.213 6 C -0.012 4.012 7 C -0.239 4.239 8 C 0.355 3.645 9 O -0.462 6.462 10 N -0.349 5.349 11 C 0.015 3.985 12 C 0.028 3.972 13 N -0.367 5.367 14 C -0.362 4.362 15 H 0.109 0.891 16 C -0.263 4.263 17 N -0.603 5.603 18 Si 0.810 3.190 19 H -0.213 1.213 20 H -0.224 1.224 21 H -0.188 1.188 22 C -0.003 4.003 23 C 0.028 3.972 24 N -0.276 5.276 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.189 0.811 31 H 0.175 0.825 32 H 0.252 0.748 33 H 0.114 0.886 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -24.632 -1.104 8.008 25.925 hybrid contribution 1.411 0.014 -0.737 1.592 sum -23.221 -1.090 7.271 24.357 Atomic orbital electron populations 1.21844 0.91021 1.04279 1.03422 1.22880 0.96305 0.79768 1.02689 1.86215 1.16272 1.32455 1.86649 1.20321 0.84499 0.90427 0.89230 1.21241 0.95271 0.96369 1.08375 1.21672 0.91942 0.99551 0.88044 1.20710 0.93002 0.96398 1.13793 1.18287 0.86755 0.84162 0.75285 1.90767 1.75917 1.27379 1.52142 1.45765 1.06182 1.09177 1.73732 1.23238 0.77961 0.99735 0.97607 1.22555 0.87433 0.94199 0.93062 1.46046 1.07003 1.66459 1.17235 1.19428 0.85869 1.34458 0.96463 0.89104 1.25747 1.02950 1.01652 0.95938 1.70051 1.38821 1.46753 1.04681 0.85012 0.78956 0.77127 0.77955 1.21251 1.22397 1.18781 1.23030 0.89420 0.95180 0.92660 1.22945 0.89275 0.96544 0.88409 1.67397 1.06358 1.33095 1.20778 0.91595 0.88340 0.91433 0.91618 0.91364 0.81110 0.82507 0.74827 0.88613 0.95425 0.95278 0.94247 0.91508 0.91393 0.79532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 71.98 0.74 -0.58 16 2 C 0.06 0.82 6.02 71.98 0.43 1.26 16 3 O -0.31 -5.74 10.10 -87.91 -0.89 -6.63 16 4 C 0.33 6.81 7.49 84.83 0.64 7.44 16 5 C -0.19 -3.52 10.02 22.43 0.22 -3.30 16 6 C 0.01 0.29 9.70 22.70 0.22 0.51 16 7 C -0.23 -5.56 5.89 -20.00 -0.12 -5.68 16 8 C 0.57 17.44 7.77 86.72 0.67 18.11 16 9 O -0.58 -22.86 16.04 -3.96 -0.06 -22.92 16 10 N -0.70 -20.05 5.33 -450.51 -2.40 -22.45 16 11 C 0.12 4.56 4.40 46.75 0.21 4.76 16 12 C 0.15 7.49 7.24 86.44 0.63 8.11 16 13 N -0.64 -32.59 3.70 -716.73 -2.65 -35.24 16 14 C -0.23 -13.07 10.70 84.03 0.90 -12.17 16 15 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 16 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 17 N -0.95 -58.91 11.51 21.65 0.25 -58.66 16 18 Si 0.98 45.88 29.56 68.60 2.03 47.91 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 C 0.12 4.54 8.69 86.49 0.75 5.29 16 23 C 0.19 3.70 10.71 85.03 0.91 4.61 16 24 N -0.55 -11.57 9.18 -307.82 -2.82 -14.39 16 25 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.96 8.10 -2.38 -0.02 0.94 16 29 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 30 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.16 3.26 7.73 -2.91 -0.02 3.24 16 32 H 0.41 8.77 6.76 -92.71 -0.63 8.15 16 33 H 0.10 4.00 7.51 -2.39 -0.02 3.98 16 34 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.03 1.65 7.37 -2.38 -0.02 1.63 16 36 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 37 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.07 2.16 8.11 -2.39 -0.02 2.14 16 39 H 0.19 2.63 6.41 -2.91 -0.02 2.62 16 Total: -1.00 -74.69 336.14 0.56 -74.13 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.45 Total: 13.44 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: 6.67 Total: 24.81 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -7.63 Total: -130.75 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.95 Total: -29.55 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -74.69 0.56 -74.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030397713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.281 kcal (2) G-P(sol) polarization free energy of solvation -74.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds