Wall clock time and date at job start Tue Mar 31 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.46995 * 2 1 4 4 C 1.35681 * 117.00063 * 179.97438 * 3 2 1 5 5 C 1.38892 * 119.62474 * 179.97438 * 4 3 2 6 6 C 1.39577 * 118.94995 * 179.97438 * 5 4 3 7 7 C 1.48160 * 120.89200 * 180.02562 * 6 5 4 8 8 O 1.21513 * 120.00101 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99584 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72357 * 9 7 6 11 11 C 1.53951 * 113.74297 * 254.01897 * 10 9 7 12 12 N 1.47814 * 86.03758 * 222.08522 * 11 10 9 13 13 C 1.36932 * 134.45715 * 204.64642 * 12 11 10 14 14 H 1.07995 * 120.00326 * 179.86751 * 13 12 11 15 15 C 1.38817 * 119.99793 * 359.86085 * 13 12 11 16 16 N 1.31613 * 120.00127 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99909 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.46877 * 60.00275 * 17 15 13 19 19 H 1.48497 * 109.47114 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47183 * 300.00796 * 17 15 13 21 21 C 1.47577 * 91.05097 * 24.55007 * 12 11 10 22 22 C 1.39967 * 118.21109 * 0.27747 * 6 5 4 23 23 C 1.37970 * 119.13753 * 359.43367 * 22 6 5 24 24 N 1.31913 * 120.97903 * 0.58585 * 23 22 6 25 25 H 1.08990 * 109.46791 * 299.99798 * 1 2 3 26 26 H 1.09003 * 109.47034 * 60.00032 * 1 2 3 27 27 H 1.08994 * 109.46659 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47314 * 240.00361 * 2 1 3 29 29 H 1.08995 * 109.47189 * 120.00247 * 2 1 3 30 30 H 1.08001 * 120.52960 * 359.97438 * 5 4 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 32 32 H 1.09000 * 112.94810 * 25.60828 * 10 9 7 33 33 H 1.09000 * 113.77101 * 336.35008 * 11 10 9 34 34 H 1.09000 * 113.76926 * 107.74289 * 11 10 9 35 35 H 0.97003 * 119.99806 * 180.02562 * 16 15 13 36 36 H 1.09005 * 113.76936 * 221.15467 * 21 12 11 37 37 H 1.08997 * 113.77659 * 89.75281 * 21 12 11 38 38 H 1.08001 * 120.42721 * 179.72748 * 22 6 5 39 39 H 1.08005 * 119.51523 * 180.31407 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3515 1.5251 0.0005 5 6 3.8739 2.8120 0.0000 6 6 5.2597 2.9787 0.0011 7 6 5.8632 4.3318 0.0012 8 8 5.1496 5.3153 0.0008 9 7 7.2036 4.4717 0.0028 10 6 7.8004 5.8097 -0.0032 11 6 8.4096 6.2105 -1.3590 12 7 9.5329 6.7649 -0.5744 13 6 10.4695 7.7388 -0.7967 14 1 11.2056 7.9631 -0.0390 15 6 10.4728 8.4378 -1.9960 16 7 9.5754 8.1647 -2.9193 17 14 11.7508 9.7659 -2.2995 18 1 13.1096 9.1710 -2.2273 19 1 11.5407 10.3567 -3.6456 20 1 11.6188 10.8252 -1.2672 21 6 9.2384 5.8495 0.5450 22 6 6.0638 1.8331 -0.0032 23 6 5.4635 0.5908 0.0035 24 7 4.1498 0.4716 0.0023 25 1 -0.3632 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2183 3.6703 -0.0012 31 1 7.7733 3.6866 0.0036 32 1 7.1461 6.5688 0.4255 33 1 8.6870 5.3619 -1.9842 34 1 7.8321 6.9641 -1.8946 35 1 9.5780 8.6529 -3.7575 36 1 9.3214 6.3153 1.5270 37 1 9.7597 4.8944 0.4805 38 1 7.1403 1.9204 -0.0070 39 1 6.0782 -0.2972 0.0053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030932149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:54 Heat of formation + Delta-G solvation = -2.990851 kcal Electronic energy + Delta-G solvation = -22077.696681 eV Core-core repulsion = 18600.870684 eV Total energy + Delta-G solvation = -3476.825997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.94090 -40.86747 -39.40019 -38.73150 -35.33351 -34.09954 -33.39755 -32.93936 -30.90296 -29.48062 -26.65059 -26.51362 -24.87062 -24.37100 -23.64513 -21.80085 -21.42269 -19.73246 -18.79080 -18.37074 -17.60603 -17.32951 -17.02144 -16.93589 -16.65578 -16.07597 -15.71952 -15.58940 -15.06549 -14.88625 -14.81771 -14.57609 -13.70976 -13.45900 -13.37159 -13.28971 -13.21949 -12.99568 -12.81076 -12.64894 -12.47040 -12.34365 -11.98590 -11.72544 -11.55501 -11.39548 -11.07610 -10.88216 -10.71981 -10.05769 -9.59702 -8.98232 -7.92365 -5.27725 -0.41910 0.08165 1.45889 1.49949 1.56082 1.73111 1.77045 2.16527 2.49204 2.75414 3.22932 3.26340 3.36117 3.52548 3.80938 3.88419 3.94896 4.04378 4.10513 4.18824 4.30916 4.46875 4.49234 4.61960 4.72844 4.75190 4.83994 4.90460 4.96048 4.99308 5.07973 5.20208 5.22504 5.32735 5.47816 5.64602 5.88684 6.19192 6.45614 6.71179 6.87465 7.09768 7.57958 8.49988 9.24294 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.043092 B = 0.002611 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.618223 B =10720.855063 C =10965.584275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.321 6.321 4 C 0.311 3.689 5 C -0.154 4.154 6 C -0.057 4.057 7 C 0.555 3.445 8 O -0.574 6.574 9 N -0.687 5.687 10 C 0.118 3.882 11 C 0.151 3.849 12 N -0.640 5.640 13 C -0.234 4.234 14 H 0.092 0.908 15 C -0.071 4.071 16 N -0.956 5.956 17 Si 0.983 3.017 18 H -0.273 1.273 19 H -0.297 1.297 20 H -0.275 1.275 21 C 0.125 3.875 22 C -0.167 4.167 23 C 0.145 3.855 24 N -0.534 5.534 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.418 0.582 32 H 0.094 0.906 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.248 0.752 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.177 0.823 39 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.968 -21.592 8.019 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.229 6.229 4 C 0.132 3.868 5 C -0.176 4.176 6 C -0.068 4.068 7 C 0.342 3.658 8 O -0.454 6.454 9 N -0.339 5.339 10 C 0.012 3.988 11 C 0.024 3.976 12 N -0.367 5.367 13 C -0.362 4.362 14 H 0.110 0.890 15 C -0.264 4.264 16 N -0.605 5.605 17 Si 0.811 3.189 18 H -0.198 1.198 19 H -0.224 1.224 20 H -0.201 1.201 21 C -0.001 4.001 22 C -0.187 4.187 23 C -0.010 4.010 24 N -0.258 5.258 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.257 0.743 32 H 0.112 0.888 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.194 0.806 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -11.899 -21.272 7.869 25.613 hybrid contribution 1.091 1.418 -0.694 1.919 sum -10.809 -19.854 7.176 23.717 Atomic orbital electron populations 1.21855 0.91350 1.04330 1.03180 1.22848 0.96092 0.79683 1.02683 1.86248 1.16428 1.32608 1.87628 1.19622 0.84693 0.89339 0.93101 1.21096 0.95030 0.96561 1.04940 1.20033 0.93384 0.93417 0.99965 1.18527 0.82740 0.88545 0.75971 1.90778 1.62144 1.41301 1.51159 1.45715 1.05717 1.09592 1.72858 1.23295 0.93717 0.83901 0.97898 1.22615 0.87265 0.94649 0.93032 1.46031 1.35116 1.38780 1.16757 1.19393 1.07070 1.09336 1.00442 0.89030 1.25732 1.01474 1.02731 0.96428 1.70027 1.38112 1.44837 1.07492 0.85085 0.78569 0.78733 0.76536 1.19835 1.22365 1.20122 1.23028 0.90254 0.94225 0.92551 1.22542 1.02731 0.91537 1.01904 1.23119 0.88422 0.98479 0.91013 1.67314 1.07889 1.32693 1.17935 0.91772 0.91929 0.87917 0.91441 0.91230 0.84511 0.74296 0.88835 0.95205 0.94960 0.94278 0.91497 0.90989 0.80595 0.77352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.06 1.00 6.03 71.98 0.43 1.43 16 3 O -0.32 -7.48 10.11 -89.99 -0.91 -8.39 16 4 C 0.31 7.50 7.49 84.80 0.63 8.14 16 5 C -0.15 -4.13 9.61 22.75 0.22 -3.91 16 6 C -0.06 -1.42 5.91 -19.90 -0.12 -1.53 16 7 C 0.56 17.54 7.80 86.88 0.68 18.22 16 8 O -0.57 -23.65 16.06 -3.76 -0.06 -23.71 16 9 N -0.69 -19.43 5.33 -449.93 -2.40 -21.83 16 10 C 0.12 4.43 4.40 46.75 0.21 4.63 16 11 C 0.15 7.27 7.33 86.44 0.63 7.90 16 12 N -0.64 -32.21 3.70 -716.60 -2.65 -34.86 16 13 C -0.23 -12.98 10.70 84.04 0.90 -12.08 16 14 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 15 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 16 N -0.96 -58.84 11.39 21.65 0.25 -58.59 16 17 Si 0.98 45.72 29.55 68.60 2.03 47.74 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 19 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 C 0.12 4.53 8.69 86.49 0.75 5.28 16 22 C -0.17 -2.67 9.61 22.63 0.22 -2.45 16 23 C 0.15 2.08 11.17 84.62 0.94 3.03 16 24 N -0.53 -10.76 9.18 -309.14 -2.84 -13.59 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 29 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 30 H 0.14 4.01 7.74 -2.91 -0.02 3.99 16 31 H 0.42 8.26 6.85 -92.71 -0.64 7.63 16 32 H 0.09 3.94 7.51 -2.39 -0.02 3.93 16 33 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.03 1.83 7.16 -2.39 -0.02 1.82 16 35 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.07 2.18 8.11 -2.39 -0.02 2.16 16 38 H 0.18 1.58 6.53 -2.91 -0.02 1.56 16 39 H 0.21 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -77.06 336.18 0.56 -76.51 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.44 Total: 12.65 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 6.71 Total: 24.09 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -7.64 Total: -128.88 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.97 Total: -32.10 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -77.06 0.56 -76.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030932149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.517 kcal (2) G-P(sol) polarization free energy of solvation -77.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds