Wall clock time and date at job start Tue Mar 31 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47367 * 2 1 4 4 C 1.35640 * 117.00007 * 179.97438 * 3 2 1 5 5 C 1.39343 * 120.54192 * 0.02562 * 4 3 2 6 6 C 1.38306 * 118.44243 * 179.97438 * 5 4 3 7 7 C 1.38760 * 119.44451 * 359.97438 * 6 5 4 8 8 N 1.31381 * 121.06592 * 0.02562 * 7 6 5 9 9 C 1.32859 * 121.69708 * 359.97438 * 8 7 6 10 10 C 1.47835 * 119.78309 * 180.02562 * 9 8 7 11 11 O 1.21554 * 119.99832 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99740 * 0.02562 * 10 9 8 13 13 C 1.46504 * 119.99443 * 179.97438 * 12 10 9 14 14 C 1.53946 * 113.73950 * 253.73998 * 13 12 10 15 15 N 1.47814 * 86.03592 * 222.08975 * 14 13 12 16 16 C 1.36939 * 134.45508 * 204.64645 * 15 14 13 17 17 H 1.07998 * 120.00237 * 173.34430 * 16 15 14 18 18 C 1.38820 * 119.99714 * 353.34766 * 16 15 14 19 19 N 1.31613 * 120.00207 * 5.06203 * 18 16 15 20 20 Si 1.86799 * 119.99459 * 185.06144 * 18 16 15 21 21 H 1.48499 * 109.47238 * 94.98684 * 20 18 16 22 22 H 1.48503 * 109.47133 * 214.98460 * 20 18 16 23 23 H 1.48502 * 109.47518 * 334.98828 * 20 18 16 24 24 C 1.47571 * 91.05302 * 24.54902 * 15 14 13 25 25 H 1.09004 * 109.47304 * 300.00123 * 1 2 3 26 26 H 1.09002 * 109.47090 * 59.99870 * 1 2 3 27 27 H 1.08999 * 109.47666 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46746 * 239.99307 * 2 1 3 29 29 H 1.08997 * 109.46654 * 119.99982 * 2 1 3 30 30 H 1.08001 * 120.78104 * 359.95364 * 5 4 3 31 31 H 1.07996 * 120.27720 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.46901 * 179.72134 * 7 6 5 33 33 H 0.96993 * 120.00404 * 0.02562 * 12 10 9 34 34 H 1.08996 * 112.94434 * 25.33418 * 13 12 10 35 35 H 1.09005 * 113.77002 * 336.35327 * 14 13 12 36 36 H 1.08999 * 113.77038 * 107.74740 * 14 13 12 37 37 H 0.97008 * 119.99915 * 180.02562 * 19 18 16 38 38 H 1.08996 * 113.77274 * 221.15520 * 24 15 14 39 39 H 1.08999 * 113.77364 * 89.75362 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3511 1.5249 0.0005 5 6 4.2103 0.4279 0.0005 6 6 5.5739 0.6591 0.0005 7 6 6.0444 1.9646 0.0000 8 7 5.2155 2.9839 0.0000 9 6 3.8980 2.8124 0.0000 10 6 3.0042 3.9899 -0.0005 11 8 1.7982 3.8375 -0.0001 12 7 3.5265 5.2324 -0.0016 13 6 2.6406 6.3993 -0.0027 14 6 2.5803 7.1303 -1.3562 15 7 2.6361 8.3794 -0.5678 16 6 2.2326 9.6697 -0.7856 17 1 2.2944 10.3966 0.0108 18 6 1.7442 10.0435 -2.0301 19 7 1.5751 9.1378 -2.9698 20 14 1.3269 11.8322 -2.3707 21 1 2.4858 12.4959 -3.0199 22 1 0.1480 11.9026 -3.2711 23 1 1.0150 12.5200 -1.0921 24 6 3.2985 7.6773 0.5485 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8206 -0.5794 0.0008 31 1 6.2667 -0.1693 0.0010 32 1 7.1091 2.1456 0.0046 33 1 4.4888 5.3540 -0.0023 34 1 1.6611 6.1895 0.4268 35 1 3.4570 6.9670 -1.9832 36 1 1.6411 6.9883 -1.8908 37 1 1.2341 9.3991 -3.8396 38 1 2.9315 7.9712 1.5319 39 1 4.3864 7.6750 0.4823 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031495853.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:28 Heat of formation + Delta-G solvation = 24.852860 kcal Electronic energy + Delta-G solvation = -22683.072000 eV Core-core repulsion = 19207.453397 eV Total energy + Delta-G solvation = -3475.618603 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.00095 -39.05556 -38.40222 -37.26713 -33.46385 -32.51707 -32.27240 -31.59599 -30.10809 -27.40979 -25.16202 -24.73352 -24.30188 -22.73687 -22.36411 -20.46238 -19.53742 -18.48989 -17.59696 -16.99777 -16.66781 -16.43242 -15.51085 -15.28898 -14.94685 -14.67359 -14.61399 -13.79145 -13.72780 -13.53969 -13.51813 -12.85988 -12.75173 -12.55995 -12.52292 -11.78718 -11.52731 -11.38684 -11.34212 -11.13838 -10.83056 -10.72682 -10.36931 -10.11355 -10.04650 -9.98352 -9.48145 -9.38575 -8.74310 -8.64356 -8.24045 -6.83961 -5.72907 -3.05596 0.55304 1.02508 2.88056 2.95474 3.42345 3.45358 3.50255 3.51315 3.87708 4.18801 4.34951 4.46729 4.56189 4.65928 4.72238 4.82212 4.93397 4.95917 5.20378 5.30293 5.43158 5.53243 5.60730 5.68371 5.69752 5.70404 5.92054 6.10071 6.16968 6.31798 6.53235 6.65983 6.90041 7.05418 7.31571 7.44544 7.58164 7.65273 8.01426 8.08498 8.68237 9.08208 9.74524 10.63239 11.44474 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023471 B = 0.003393 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.654631 B = 8249.360456 C = 9020.303378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.268 6.268 4 C 0.138 3.862 5 C -0.179 4.179 6 C -0.112 4.112 7 C 0.055 3.945 8 N -0.419 5.419 9 C 0.051 3.949 10 C 0.566 3.434 11 O -0.518 6.518 12 N -0.697 5.697 13 C 0.091 3.909 14 C 0.158 3.842 15 N -0.608 5.608 16 C -0.225 4.225 17 H 0.082 0.918 18 C -0.006 4.006 19 N -0.916 5.916 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.113 3.887 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.164 0.836 33 H 0.405 0.595 34 H 0.111 0.889 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.254 0.746 38 H 0.049 0.951 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.016 -22.863 6.935 24.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.178 6.178 4 C 0.087 3.913 5 C -0.205 4.205 6 C -0.132 4.132 7 C -0.105 4.105 8 N -0.131 5.131 9 C -0.089 4.089 10 C 0.350 3.650 11 O -0.393 6.393 12 N -0.348 5.348 13 C -0.014 4.014 14 C 0.031 3.969 15 N -0.334 5.334 16 C -0.353 4.353 17 H 0.100 0.900 18 C -0.203 4.203 19 N -0.563 5.563 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.014 4.014 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.181 0.819 33 H 0.240 0.760 34 H 0.128 0.872 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.071 -21.661 6.749 23.486 hybrid contribution 0.335 -0.203 -0.390 0.552 sum 6.406 -21.864 6.360 23.654 Atomic orbital electron populations 1.21742 0.92172 1.02513 1.04370 1.22936 0.96820 0.82110 1.01027 1.86462 1.16771 1.28471 1.86132 1.20038 0.84315 0.93759 0.93194 1.21735 0.94186 0.98664 1.05933 1.22170 0.95224 0.98886 0.96924 1.22695 0.99928 0.87845 1.00059 1.67650 1.01842 1.35492 1.08086 1.20938 0.90283 0.91509 1.06159 1.17612 0.87067 0.82582 0.77772 1.90830 1.13633 1.85488 1.49387 1.45959 1.10981 1.05009 1.72847 1.23938 0.94473 0.81889 1.01092 1.22657 1.00413 0.82367 0.91448 1.45711 1.66827 1.05710 1.15181 1.18996 1.35890 0.84144 0.96224 0.90023 1.24849 1.01716 0.97887 0.95837 1.69857 1.50285 1.31666 1.04466 0.86104 0.77521 0.84322 0.77849 1.21627 1.21686 1.20498 1.22870 0.95726 0.89306 0.93495 0.91166 0.91055 0.90517 0.92016 0.92080 0.83856 0.84136 0.81870 0.75977 0.87153 0.95100 0.90923 0.93578 0.93265 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.05 0.42 5.48 37.16 0.20 0.63 16 3 O -0.27 -3.81 8.20 -40.57 -0.33 -4.15 16 4 C 0.14 1.85 6.71 -38.56 -0.26 1.59 16 5 C -0.18 -1.66 9.13 -39.15 -0.36 -2.02 16 6 C -0.11 -0.88 10.10 -39.36 -0.40 -1.27 16 7 C 0.06 0.53 11.17 -17.55 -0.20 0.33 16 8 N -0.42 -5.59 9.54 -9.71 -0.09 -5.68 16 9 C 0.05 0.78 6.76 -82.88 -0.56 0.22 16 10 C 0.57 10.55 7.80 -12.33 -0.10 10.46 16 11 O -0.52 -11.23 14.76 -16.63 -0.25 -11.48 16 12 N -0.70 -12.62 5.36 -56.29 -0.30 -12.92 16 13 C 0.09 1.91 4.40 -70.14 -0.31 1.60 16 14 C 0.16 3.98 7.24 -2.84 -0.02 3.96 16 15 N -0.61 -16.25 3.70 -177.88 -0.66 -16.91 16 16 C -0.22 -6.51 10.70 -15.06 -0.16 -6.67 16 17 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 18 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 19 N -0.92 -28.15 11.51 55.49 0.64 -27.51 16 20 Si 0.91 22.62 29.56 -169.99 -5.02 17.59 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.11 2.40 8.69 -2.97 -0.03 2.37 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.45 7.70 -51.93 -0.40 0.05 16 29 H 0.06 0.43 7.70 -51.93 -0.40 0.03 16 30 H 0.14 0.90 6.46 -52.49 -0.34 0.56 16 31 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.40 6.56 8.04 -40.82 -0.33 6.23 16 34 H 0.11 2.46 7.50 -51.93 -0.39 2.07 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 2.06 7.37 -51.93 -0.38 1.67 16 37 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.04 0.72 8.11 -51.93 -0.42 0.30 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -35.61 333.75 -8.04 -43.66 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.17 Total: 2.31 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -1.89 Total: 10.05 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.41 Total: -63.02 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.58 Total: -15.62 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.61 -8.04 -43.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031495853.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.511 kcal (2) G-P(sol) polarization free energy of solvation -35.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds