Wall clock time and date at job start Tue Mar 31 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47367 * 2 1 4 4 C 1.35640 * 117.00007 * 179.97438 * 3 2 1 5 5 C 1.39343 * 120.54192 * 0.02562 * 4 3 2 6 6 C 1.38306 * 118.44243 * 179.97438 * 5 4 3 7 7 C 1.38760 * 119.44451 * 359.97438 * 6 5 4 8 8 N 1.31381 * 121.06592 * 0.02562 * 7 6 5 9 9 C 1.32859 * 121.69708 * 359.97438 * 8 7 6 10 10 C 1.47835 * 119.78309 * 180.02562 * 9 8 7 11 11 O 1.21554 * 119.99832 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99740 * 0.02562 * 10 9 8 13 13 C 1.46504 * 119.99443 * 179.97438 * 12 10 9 14 14 C 1.53946 * 113.73950 * 253.73998 * 13 12 10 15 15 N 1.47814 * 86.03592 * 222.08975 * 14 13 12 16 16 C 1.36939 * 134.45508 * 204.64645 * 15 14 13 17 17 H 1.07998 * 120.00237 * 173.34430 * 16 15 14 18 18 C 1.38820 * 119.99714 * 353.34766 * 16 15 14 19 19 N 1.31613 * 120.00207 * 5.06203 * 18 16 15 20 20 Si 1.86799 * 119.99459 * 185.06144 * 18 16 15 21 21 H 1.48499 * 109.47238 * 94.98684 * 20 18 16 22 22 H 1.48503 * 109.47133 * 214.98460 * 20 18 16 23 23 H 1.48502 * 109.47518 * 334.98828 * 20 18 16 24 24 C 1.47571 * 91.05302 * 24.54902 * 15 14 13 25 25 H 1.09004 * 109.47304 * 300.00123 * 1 2 3 26 26 H 1.09002 * 109.47090 * 59.99870 * 1 2 3 27 27 H 1.08999 * 109.47666 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46746 * 239.99307 * 2 1 3 29 29 H 1.08997 * 109.46654 * 119.99982 * 2 1 3 30 30 H 1.08001 * 120.78104 * 359.95364 * 5 4 3 31 31 H 1.07996 * 120.27720 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.46901 * 179.72134 * 7 6 5 33 33 H 0.96993 * 120.00404 * 0.02562 * 12 10 9 34 34 H 1.08996 * 112.94434 * 25.33418 * 13 12 10 35 35 H 1.09005 * 113.77002 * 336.35327 * 14 13 12 36 36 H 1.08999 * 113.77038 * 107.74740 * 14 13 12 37 37 H 0.97008 * 119.99915 * 180.02562 * 19 18 16 38 38 H 1.08996 * 113.77274 * 221.15520 * 24 15 14 39 39 H 1.08999 * 113.77364 * 89.75362 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3511 1.5249 0.0005 5 6 4.2103 0.4279 0.0005 6 6 5.5739 0.6591 0.0005 7 6 6.0444 1.9646 0.0000 8 7 5.2155 2.9839 0.0000 9 6 3.8980 2.8124 0.0000 10 6 3.0042 3.9899 -0.0005 11 8 1.7982 3.8375 -0.0001 12 7 3.5265 5.2324 -0.0016 13 6 2.6406 6.3993 -0.0027 14 6 2.5803 7.1303 -1.3562 15 7 2.6361 8.3794 -0.5678 16 6 2.2326 9.6697 -0.7856 17 1 2.2944 10.3966 0.0108 18 6 1.7442 10.0435 -2.0301 19 7 1.5751 9.1378 -2.9698 20 14 1.3269 11.8322 -2.3707 21 1 2.4858 12.4959 -3.0199 22 1 0.1480 11.9026 -3.2711 23 1 1.0150 12.5200 -1.0921 24 6 3.2985 7.6773 0.5485 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8206 -0.5794 0.0008 31 1 6.2667 -0.1693 0.0010 32 1 7.1091 2.1456 0.0046 33 1 4.4888 5.3540 -0.0023 34 1 1.6611 6.1895 0.4268 35 1 3.4570 6.9670 -1.9832 36 1 1.6411 6.9883 -1.8908 37 1 1.2341 9.3991 -3.8396 38 1 2.9315 7.9712 1.5319 39 1 4.3864 7.6750 0.4823 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031495853.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:27 Heat of formation + Delta-G solvation = -0.952752 kcal Electronic energy + Delta-G solvation = -22684.191015 eV Core-core repulsion = 19207.453397 eV Total energy + Delta-G solvation = -3476.737618 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.94503 -40.56479 -39.30927 -38.96625 -35.13994 -33.92029 -33.10999 -33.00165 -30.99697 -29.41009 -26.65461 -26.24738 -25.37243 -24.29408 -23.14748 -21.80281 -21.33765 -19.41610 -18.81642 -18.68928 -17.96357 -17.25396 -17.04693 -16.94867 -16.24779 -15.98582 -15.69767 -15.41591 -14.99597 -14.79161 -14.43948 -14.32542 -13.66636 -13.56865 -13.48145 -13.32558 -13.24938 -13.22407 -12.82504 -12.64545 -12.30072 -12.27217 -11.94841 -11.83292 -11.53060 -11.24451 -10.89990 -10.80220 -10.57640 -9.97852 -9.45708 -8.98605 -7.93814 -5.29287 -0.33435 0.25878 1.45101 1.48251 1.57501 1.78710 2.07214 2.14940 2.49141 2.85616 3.18504 3.25592 3.41765 3.61818 3.76459 3.84216 4.02087 4.03372 4.14171 4.16845 4.30184 4.34049 4.50270 4.53154 4.73111 4.78439 4.87980 4.90945 4.92806 5.02765 5.17051 5.19255 5.22822 5.45128 5.48180 5.68123 5.86175 6.27893 6.51950 6.85758 6.87160 7.27064 7.56176 8.50385 9.24001 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023471 B = 0.003393 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.654631 B = 8249.360456 C = 9020.303378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.037 3.963 3 O -0.309 6.309 4 C 0.124 3.876 5 C -0.172 4.172 6 C -0.085 4.085 7 C 0.053 3.947 8 N -0.441 5.441 9 C 0.004 3.996 10 C 0.562 3.438 11 O -0.562 6.562 12 N -0.690 5.690 13 C 0.118 3.882 14 C 0.157 3.843 15 N -0.637 5.637 16 C -0.238 4.238 17 H 0.092 0.908 18 C -0.069 4.069 19 N -0.955 5.955 20 Si 0.986 3.014 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.263 1.263 24 C 0.124 3.876 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.179 0.821 31 H 0.191 0.809 32 H 0.199 0.801 33 H 0.416 0.584 34 H 0.094 0.906 35 H 0.023 0.977 36 H 0.030 0.970 37 H 0.249 0.751 38 H 0.068 0.932 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.495 -25.032 8.119 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.037 4.037 3 O -0.220 6.220 4 C 0.073 3.927 5 C -0.198 4.198 6 C -0.105 4.105 7 C -0.109 4.109 8 N -0.153 5.153 9 C -0.132 4.132 10 C 0.348 3.652 11 O -0.440 6.440 12 N -0.342 5.342 13 C 0.012 3.988 14 C 0.030 3.970 15 N -0.364 5.364 16 C -0.366 4.366 17 H 0.110 0.890 18 C -0.262 4.262 19 N -0.604 5.604 20 Si 0.813 3.187 21 H -0.212 1.212 22 H -0.222 1.222 23 H -0.187 1.187 24 C -0.002 4.002 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.128 0.872 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.196 0.804 31 H 0.209 0.791 32 H 0.216 0.784 33 H 0.253 0.747 34 H 0.112 0.888 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.575 -23.839 7.977 26.561 hybrid contribution -0.329 0.262 -0.722 0.836 sum 8.246 -23.578 7.254 26.010 Atomic orbital electron populations 1.21798 0.92431 1.04084 1.02524 1.23266 0.96748 0.80520 1.03164 1.86419 1.17718 1.31491 1.86357 1.20262 0.84677 0.94257 0.93486 1.22173 0.94351 0.98869 1.04380 1.22751 0.95288 0.99558 0.92857 1.23447 1.01003 0.88063 0.98428 1.67546 1.01177 1.37550 1.09003 1.20363 0.90888 0.90744 1.11191 1.18249 0.87232 0.83469 0.76224 1.90787 1.15686 1.86241 1.51253 1.45731 1.10998 1.04319 1.73119 1.23259 0.94556 0.83203 0.97814 1.22503 0.97869 0.83629 0.92955 1.46027 1.67864 1.05546 1.16950 1.19478 1.35209 0.85300 0.96656 0.88983 1.25796 1.02259 1.02384 0.95770 1.70075 1.51809 1.33794 1.04680 0.84958 0.76859 0.78893 0.77995 1.21154 1.22216 1.18691 1.22984 0.96734 0.87703 0.92739 0.92776 0.93138 0.87154 0.89919 0.89560 0.80351 0.79138 0.78446 0.74704 0.88784 0.95933 0.95154 0.94207 0.91382 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 10.28 71.98 0.74 -1.80 16 2 C 0.04 0.62 5.48 71.98 0.39 1.02 16 3 O -0.31 -8.92 8.20 -68.55 -0.56 -9.48 16 4 C 0.12 3.24 6.71 22.93 0.15 3.40 16 5 C -0.17 -2.54 9.13 22.55 0.21 -2.33 16 6 C -0.09 -0.89 10.10 22.41 0.23 -0.67 16 7 C 0.05 0.82 11.17 84.89 0.95 1.77 16 8 N -0.44 -11.22 9.54 -184.63 -1.76 -12.98 16 9 C 0.00 0.13 6.76 41.93 0.28 0.42 16 10 C 0.56 22.04 7.80 86.78 0.68 22.72 16 11 O -0.56 -26.10 14.76 17.10 0.25 -25.84 16 12 N -0.69 -25.88 5.36 -450.27 -2.41 -28.30 16 13 C 0.12 5.16 4.40 46.75 0.21 5.37 16 14 C 0.16 8.41 7.24 86.44 0.63 9.03 16 15 N -0.64 -34.87 3.70 -716.70 -2.65 -37.52 16 16 C -0.24 -13.98 10.70 84.04 0.90 -13.08 16 17 H 0.09 5.05 7.83 -2.91 -0.02 5.03 16 18 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 19 N -0.96 -61.10 11.51 21.65 0.25 -60.85 16 20 Si 0.99 47.31 29.56 68.60 2.03 49.34 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 C 0.12 5.23 8.69 86.49 0.75 5.98 16 25 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 27 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.00 7.70 -2.39 -0.02 0.98 16 29 H 0.09 0.98 7.70 -2.39 -0.02 0.96 16 30 H 0.18 1.30 6.46 -2.91 -0.02 1.28 16 31 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 32 H 0.20 1.57 8.06 -2.91 -0.02 1.54 16 33 H 0.42 13.64 8.04 -92.71 -0.75 12.89 16 34 H 0.09 4.45 7.50 -2.39 -0.02 4.44 16 35 H 0.02 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.03 1.85 7.37 -2.39 -0.02 1.83 16 37 H 0.25 15.40 8.31 -92.70 -0.77 14.63 16 38 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.06 2.38 8.11 -2.39 -0.02 2.36 16 Total: -1.00 -83.80 333.75 2.05 -81.75 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.33 Total: 15.72 kcal Atomic # 6 Polarization: 21.59 SS G_CDS: 6.58 Total: 28.17 kcal Atomic # 7 Polarization: -133.07 SS G_CDS: -6.58 Total: -139.65 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -0.31 Total: -35.32 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -83.80 2.05 -81.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031495853.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.799 kcal (2) G-P(sol) polarization free energy of solvation -83.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds